IMP.pmi.output Namespace Reference

Classes for writing output files and processing them. More...

Detailed Description

Classes for writing output files and processing them.

Classes
class	Output
	Class for easy writing of PDBs, RMFs, and stat files. More...
class	ProcessOutput
	A class for reading stat files. More...

Functions
def	plot_field_histogram
	This function is plotting a list of histograms from a value list. More...
def	plot_fields_box_plots
	This function plots time series as boxplots fields is a list of time series, positions are the x-values valuename is the y-label, positionname is the x-label. More...

Function Documentation

def IMP.pmi.output.plot_field_histogram	(		name,
			values_lists,
			valuename = None,
			bins = 40,
			colors = None,
			format = 'png',
			reference_xline = None,
			yplotrange = None,
			xplotrange = None,
			normalized = True,
			leg_names = None
	)

This function is plotting a list of histograms from a value list.

Parameters

name	the name of the plot
value_lists	the list of list of values eg: [[...],[...],[...]]
valuename=None	the y-label
bins=40	the number of bins
colors=None.	If None, will use rainbow. Else will use specific list
format="png"	output format
reference_xline=None	plot a reference line parallel to the y-axis
yplotrange=None	the range for the y-axis
normalized=True	whether the histogram is normalized or not
leg_names	names for the legend

Definition at line 750 of file output.py.

def IMP.pmi.output.plot_fields_box_plots	(		name,
			values,
			positions,
			frequencies = None,
			valuename = 'None',
			positionname = 'None',
			xlabels = None
	)

This function plots time series as boxplots fields is a list of time series, positions are the x-values valuename is the y-label, positionname is the x-label.

Definition at line 813 of file output.py.