Detailed Description

A shared container for Triplets.

Stores a shared collection of Triplets.

Definition at line 37 of file kernel/TripletContainer.h.

Public Types
typedef kernel::ParticleIndexTriplet	ContainedIndexType

typedef kernel::ParticleIndexTriplets	ContainedIndexTypes

typedef kernel::ParticleTriplet	ContainedType

typedef kernel::ParticleTripletsTemp	ContainedTypes

typedef TripletModifier	Modifier

typedef const kernel::ParticleIndexTriplet &	PassContainedIndexType

Public Member Functions
void	apply (const TripletModifier *sm) const
	Apply a SingletonModifier to the contents. More...

void	apply_generic (const TripletModifier *m) const
	Just use apply() in the base class. More...

const kernel::ParticleIndexTriplets &	get_contents () const

virtual kernel::ParticleIndexTriplets	get_indexes () const =0

unsigned int	get_number_of_particle_triplets () const

kernel::ParticleTriplet	get_particle_triplet (unsigned int i) const

kernel::ParticleTripletsTemp	get_particle_triplets () const

virtual kernel::ParticleIndexTriplets	get_range_indexes () const =0

Public Member Functions inherited from IMP::kernel::Container
ModelObjectsTemp	do_get_outputs () const
	containers don't have outputs More...

virtual ParticleIndexes	get_all_possible_indexes () const =0
	Get contained particles. More...

std::size_t	get_contents_hash () const

virtual bool	get_is_decomposable () const

Public Member Functions inherited from IMP::kernel::ModelObject
	ModelObject (kernel::Model *m, std::string name)

bool	get_has_dependencies () const
	Return whether this object has dependencies computed. More...

bool	get_has_required_score_states () const
	Return whether score states are computed. More...

ModelObjectsTemp	get_inputs () const

ModelObjectsTemps	get_interactions () const
	Get the interacting sets induced by this ModelObject. More...

Model *	get_model () const

ModelObjectsTemp	get_outputs () const

const ScoreStatesTemp &	get_required_score_states () const
	Get the score states that are ancestors of this in the dependency graph. More...

void	set_has_dependencies (bool tf)
	Either invalidate the dependencies or ensure they are correct. More...

void	set_has_required_score_states (bool tf)
	Compute the required score states. More...

Public Member Functions inherited from IMP::base::Object
virtual void	clear_caches ()

CheckLevel	get_check_level () const

LogLevel	get_log_level () const

virtual VersionInfo	get_version_info () const
	Get information about the module and version of the object. More...

void	set_check_level (CheckLevel l)

void	set_log_level (LogLevel l)
	Set the logging level used in this object. More...

void	set_was_used (bool tf) const

void	show (std::ostream &out=std::cout) const

const std::string &	get_name () const

void	set_name (std::string name)

virtual std::string	get_type_name () const

Protected Member Functions
	TripletContainer (kernel::Model *m, std::string name="TripletContainer %1%")

virtual void	do_apply (const TripletModifier *sm) const =0

virtual bool	do_get_provides_access () const

Protected Member Functions inherited from IMP::kernel::Container
	Container (kernel::Model *m, std::string name="Container %1%")

virtual std::size_t	do_get_contents_hash () const =0

Protected Member Functions inherited from IMP::kernel::ModelObject
virtual ModelObjectsTemp	do_get_inputs () const =0

virtual ModelObjectsTemps	do_get_interactions () const

virtual void	handle_set_has_required_score_states (bool)

Protected Member Functions inherited from IMP::base::Object
	Object (std::string name)
	Construct an object with the given name. More...

virtual void	do_destroy ()

Member Function Documentation

void IMP::kernel::TripletContainer::apply ( const TripletModifier * sm ) const

Apply a SingletonModifier to the contents.

void IMP::kernel::TripletContainer::apply_generic ( const TripletModifier * m ) const

Just use apply() in the base class.

virtual kernel::ParticleIndexTriplets IMP::kernel::TripletContainer::get_indexes ( ) const

pure virtual

Get all the indexes contained in the container.

This should be protected but isn't for compatibility reasons.

External callers should use get_contents().

unsigned int IMP::kernel::TripletContainer::get_number_of_particle_triplets ( ) const

Deprecated:: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. This can be very slow and is probably not useful

kernel::ParticleTriplet IMP::kernel::TripletContainer::get_particle_triplet ( unsigned int i ) const

Deprecated:: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP.Use get_indexes() instead and thing about using the IMP_CONTAINER_FOREACH() macro.

kernel::ParticleTripletsTemp IMP::kernel::TripletContainer::get_particle_triplets ( ) const

Deprecated:: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use get_indexes() instead.

virtual kernel::ParticleIndexTriplets IMP::kernel::TripletContainer::get_range_indexes ( ) const

pure virtual

Get all the indexes that might possibly be contained in the container, useful with dynamic containers. For example, with a container::ClosePairContainer, this is the list of all pairs taken from input list (those that are far apart in addition to those that are close).

The documentation for this class was generated from the following file:

kernel/TripletContainer.h

Detailed Description

Public Types

Public Member Functions

Protected Member Functions

Member Function Documentation