Detailed Description

A decorator for a residue with probability of secondary structure.

Contains probabilities for each sse type (helix, strand, coil)

Public Member Functions
	SecondaryStructureResidue (::IMP::kernel::Model *m,::IMP::kernel::ParticleIndex id)

	SecondaryStructureResidue (const IMP::kernel::ParticleAdaptor &d)

Floats	get_all_probabilities ()
	Return all probabilities in one vector. More...

kernel::Particle *	get_particle () const

Float	get_prob_coil () const

Float	get_prob_helix () const

Float	get_prob_strand () const

void	set_prob_coil (Float t)

void	set_prob_helix (Float t)

void	set_prob_strand (Float t)

void	show (std::ostream &out=std::cout) const

Public Member Functions inherited from IMP::kernel::Decorator
bool	get_is_valid () const

Model *	get_model () const
	Returns the Model containing the particle. More...

Particle *	get_particle () const
	Returns the particle decorated by this decorator. More...

ParticleIndex	get_particle_index () const
	Returns the particle index decorated by this decorator. More...

	operator Particle * () const

	operator ParticleIndex () const

Particle *	operator-> () const

Static Public Member Functions
static bool	get_is_setup (const IMP::kernel::ParticleAdaptor &p)

static bool	get_is_setup (kernel::Model *m, kernel::ParticleIndex pi)
	Return true if the particle is a secondary structure residue. More...

static FloatKey	get_prob_coil_key ()

static FloatKey	get_prob_helix_key ()

static FloatKey	get_prob_strand_key ()

static SecondaryStructureResidue	setup_particle (kernel::Model *m, ParticleIndex pi, Float prob_helix, Float prob_strand, Float prob_coil)

static SecondaryStructureResidue	setup_particle (IMP::kernel::ParticleAdaptor decorator, Float prob_helix, Float prob_strand, Float prob_coil)

static SecondaryStructureResidue	setup_particle (kernel::Particle *res_p)
	Set up SecondaryStructureResidue with default probabilities. More...

Additional Inherited Members
Protected Member Functions inherited from IMP::kernel::Decorator
	Decorator (Model *m, ParticleIndex pi)

	Decorator (ParticleAdaptor p)

Member Function Documentation

Floats IMP::atom::SecondaryStructureResidue::get_all_probabilities ( )

Return all probabilities in one vector.

static bool IMP::atom::SecondaryStructureResidue::get_is_setup	(	kernel::Model *	m,
		kernel::ParticleIndex	pi
	)

static

Return true if the particle is a secondary structure residue.

static SecondaryStructureResidue IMP::atom::SecondaryStructureResidue::setup_particle	(	kernel::Model *	m,
		ParticleIndex	pi,
		Float	prob_helix,
		Float	prob_strand,
		Float	prob_coil
	)

static

Setup the particle so it can be used with this decorator.

static SecondaryStructureResidue IMP::atom::SecondaryStructureResidue::setup_particle ( kernel::Particle * res_p )

static

Set up SecondaryStructureResidue with default probabilities.

The documentation for this class was generated from the following file: