Detailed Description

Add nuisance parameter to particle.

The value of the nuisance parameter may express data or theory uncertainty. It can be initialized with or without specifying its value. Default is 1. On construction, the Nuisance is unbounded. It can be bounded with set_upper and set_lower. Setting it to values outside of bounds results in setting it to the bound value.

Definition at line 25 of file Nuisance.h.

Public Member Functions
	Nuisance (::IMP::kernel::Model *m,::IMP::kernel::ParticleIndex id)

	Nuisance (const IMP::kernel::ParticleAdaptor &d)

void	add_to_nuisance_derivative (Float d, DerivativeAccumulator &accum)

bool	get_has_lower () const

bool	get_has_upper () const

Float	get_lower () const

Float	get_nuisance () const

Float	get_nuisance_derivative () const

bool	get_nuisance_is_optimized () const

Float	get_upper () const

void	remove_lower ()

void	remove_upper ()

void	set_lower (Float d)

void	set_lower (kernel::Particle *d)

void	set_nuisance (Float d)

void	set_nuisance_is_optimized (bool val)

void	set_upper (Float d)

void	set_upper (kernel::Particle *d)

void	show (std::ostream &out=std::cout) const

Public Member Functions inherited from IMP::kernel::Decorator
bool	get_is_valid () const

Model *	get_model () const
	Returns the Model containing the particle. More...

Particle *	get_particle () const
	Returns the particle decorated by this decorator. More...

ParticleIndex	get_particle_index () const
	Returns the particle index decorated by this decorator. More...

	operator Particle * () const

	operator ParticleIndex () const

Particle *	operator-> () const

Static Public Member Functions
static bool	get_is_setup (const IMP::kernel::ParticleAdaptor &p)

static bool	get_is_setup (kernel::Model *m, kernel::ParticleIndex pi)

static FloatKey	get_lower_key ()

static kernel::ParticleIndexKey	get_lower_particle_key ()

static FloatKey	get_nuisance_key ()

static FloatKey	get_upper_key ()

static kernel::ParticleIndexKey	get_upper_particle_key ()

static Nuisance	setup_particle (kernel::Model *m, ParticleIndex pi)

static Nuisance	setup_particle (IMP::kernel::ParticleAdaptor decorator)

static Nuisance	setup_particle (kernel::Model *m, ParticleIndex pi, double nuisance)

static Nuisance	setup_particle (IMP::kernel::ParticleAdaptor decorator, double nuisance)

Additional Inherited Members
Protected Member Functions inherited from IMP::kernel::Decorator
	Decorator (Model *m, ParticleIndex pi)

	Decorator (ParticleAdaptor p)

Member Function Documentation

bool IMP::isd::Nuisance::get_has_lower ( ) const

set upper and lower bound of nuisance by specifying either a float or another nuisance. Both can be set at the same time in which case the upper bound is the minimum of the two values. This constraint is enforced with the help of a ScoreState that will be created on-the-fly.

static Nuisance IMP::isd::Nuisance::setup_particle	(	kernel::Model *	m,
		ParticleIndex	pi
	)

static

Setup the particle so it can be used with this decorator.

Definition at line 31 of file Nuisance.h.

static Nuisance IMP::isd::Nuisance::setup_particle	(	kernel::Model *	m,
		ParticleIndex	pi,
		double	nuisance
	)

static

Setup the particle so that it can be used with this decorator

Definition at line 32 of file Nuisance.h.

static Nuisance IMP::isd::Nuisance::setup_particle	(	IMP::kernel::ParticleAdaptor	decorator,
		double	nuisance
	)

static

See Also: setup_particle(m, pi, nuisance )

Definition at line 32 of file Nuisance.h.

The documentation for this class was generated from the following file:

Nuisance.h

Detailed Description

Public Member Functions

Static Public Member Functions

Additional Inherited Members

Member Function Documentation