IMP.pmi.analysis Namespace Reference

Analysis tools. More...

Detailed Description

Analysis tools.

Classes
class	Alignment
	This class performs alignment and RMSD calculation for two sets of coordinates. More...
class	Clustering
	A class to cluster structures. More...
class	GetModelDensity
	A class to compute mean density maps from structures. More...

Functions
def	get_particles_at_resolution_one
	Get particles at res 1, or any beads, based on the name (no Representation needed) It is mainly used when the hierarchy is read from an rmf file Returns a dictionary of component names and their particles. More...
def	get_particles_at_resolution_ten
	Get particles at res 10, or any beads, based on the name (no Representation needed) It is mainly used when the hierarchy is read from an rmf file Returns a dictionary of component names and their particles. More...

Function Documentation

def IMP.pmi.analysis.get_particles_at_resolution_one

(

prot

)

Get particles at res 1, or any beads, based on the name (no Representation needed) It is mainly used when the hierarchy is read from an rmf file Returns a dictionary of component names and their particles.

Definition at line 2434 of file pmi/Analysis.py.

def IMP.pmi.analysis.get_particles_at_resolution_ten

(

prot

)

Get particles at res 10, or any beads, based on the name (no Representation needed) It is mainly used when the hierarchy is read from an rmf file Returns a dictionary of component names and their particles.

Definition at line 2457 of file pmi/Analysis.py.