IMP::kinematics::DihedralAngleRevoluteJoint Class Reference

#include <IMP/kinematics/revolute_joints.h>

Inheritance diagram for IMP::kinematics::DihedralAngleRevoluteJoint:

Detailed Description

A revolute joint that is parameterized as a dihedral angle between two planes

Definition at line 174 of file revolute_joints.h.

Public Member Functions
	DihedralAngleRevoluteJoint (IMP::core::RigidBody parent, IMP::core::RigidBody child, IMP::core::XYZ a, IMP::core::XYZ b, IMP::core::XYZ c, IMP::core::XYZ d)
Public Member Functions inherited from IMP::kinematics::RevoluteJoint
	RevoluteJoint (IMP::core::RigidBody parent, IMP::core::RigidBody child)
double	get_angle () const
void	set_angle (double angle)
Public Member Functions inherited from IMP::kinematics::Joint
	Joint (IMP::core::RigidBody parent, IMP::core::RigidBody child)
IMP::core::RigidBody	get_child_node () const
KinematicForest *	get_owner_kf () const
IMP::core::RigidBody	get_parent_node () const
virtual const IMP::algebra::Transformation3D &	get_transformation_child_to_parent () const
virtual std::string	get_type_name () const
virtual ::IMP::base::VersionInfo	get_version_info () const
	Get information about the module and version of the object. More...
Public Member Functions inherited from IMP::base::Object
virtual void	clear_caches ()
CheckLevel	get_check_level () const
LogLevel	get_log_level () const
void	set_check_level (CheckLevel l)
void	set_log_level (LogLevel l)
	Set the logging level used in this object. More...
void	set_was_used (bool tf) const
void	show (std::ostream &out=std::cout) const
const std::string &	get_name () const
void	set_name (std::string name)

Protected Member Functions
virtual double	get_current_angle_from_cartesian_witnesses () const
virtual void	update_axis_of_rotation_from_cartesian_witnesses ()
Protected Member Functions inherited from IMP::kinematics::RevoluteJoint
const IMP::algebra::Vector3D &	get_rot_axis_origin () const
const IMP::algebra::Vector3D &	get_rot_axis_unit_vector () const
IMP::algebra::Transformation3D	get_rotation_about_joint_in_parent_coordinates () const
virtual void	update_child_node_reference_frame () const
virtual void	update_joint_from_cartesian_witnesses ()
Protected Member Functions inherited from IMP::kinematics::Joint
virtual const IMP::algebra::Transformation3D &	get_transformation_child_to_parent_no_checks () const
void	set_owner_kf (KinematicForest *kf)
void	set_transformation_child_to_parent_no_checks (IMP::algebra::Transformation3D transformation)
Protected Member Functions inherited from IMP::base::Object
	Object (std::string name)
	Construct an object with the given name. More...
virtual void	do_destroy ()

Additional Inherited Members
Protected Attributes inherited from IMP::kinematics::RevoluteJoint
double	angle_
double	last_updated_angle_
IMP::algebra::Vector3D	rot_axis_origin_
IMP::algebra::Vector3D	rot_axis_unit_vector_

Constructor & Destructor Documentation

IMP::kinematics::DihedralAngleRevoluteJoint::DihedralAngleRevoluteJoint	(	IMP::core::RigidBody	parent,
		IMP::core::RigidBody	child,
		IMP::core::XYZ	a,
		IMP::core::XYZ	b,
		IMP::core::XYZ	c,
		IMP::core::XYZ	d
	)

constructs a dihedral angle that revolves around the axis b-c, using a,b,c,d as witnesses for the dihedral angle

Parameters

parent,child	kinematic nodes upstream and downstream (resp.) of this joint
a,b,c,d	'witnesses' whose coordinates define the dihedral angle between the planes containing a-b-c and b-c-d)

Note

It is assumed that neither a, b and c are downstream of child, and also that d is not upstream of it

Member Function Documentation

virtual double IMP::kinematics::DihedralAngleRevoluteJoint::get_current_angle_from_cartesian_witnesses ( ) const

protectedvirtual

this protected method uses the Cartesian witnesses to compute the actual current dihedral angle of this joint (assuming external coordinates of required Cartesian witnesses are up to date)

Implements IMP::kinematics::RevoluteJoint.

virtual void IMP::kinematics::DihedralAngleRevoluteJoint::update_axis_of_rotation_from_cartesian_witnesses ( )

protectedvirtual

updates the rot_axis_unit_vector_ and rot_axis_origin_ variables in parent coordinates based on the witnesses b_ and c_, using b_-c_ as the axis of rotation

Note

it is assumed b_ and c_ have update Cartesian coordinates

Implements IMP::kinematics::RevoluteJoint.

Definition at line 201 of file revolute_joints.h.

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The documentation for this class was generated from the following file:

• revolute_joints.h