Detailed Description

Define sets of equivalent particles.

kernel::Particles in an equivalency set are assumed to be equivalent under exchange. Given that, one should only generate each of the equivalent conformations once. More specifically, given equivalent particles p0 and p1, if p0 is given state s0 and p1 is given state s1, then p1 will never be given state s0 when p0 is given the state s1.

Definition at line 238 of file subset_filters.h.

Public Member Functions
	EquivalenceSubsetFilterTable (IMP::domino::ParticleStatesTable *pst)

virtual double	get_strength (const IMP::domino::Subset &s, const IMP::domino::Subsets &excluded) const
	The strength is a rough metric of how this filter restricts the subset. More...

virtual IMP::domino::SubsetFilter *	get_subset_filter (const IMP::domino::Subset &s, const IMP::domino::Subsets &excluded) const

virtual std::string	get_type_name () const

virtual ::IMP::base::VersionInfo	get_version_info () const
	Get information about the module and version of the object. More...

Public Member Functions inherited from IMP::domino::DisjointSetsSubsetFilterTable
void	add_pair (const kernel::ParticlePair &pp)

void	add_set (const kernel::ParticlesTemp &ps)

Public Member Functions inherited from IMP::domino::SubsetFilterTable
	SubsetFilterTable (std::string name="SubsetFilterTable%1%")

Public Member Functions inherited from IMP::base::Object
virtual void	clear_caches ()

CheckLevel	get_check_level () const

LogLevel	get_log_level () const

void	set_check_level (CheckLevel l)

void	set_log_level (LogLevel l)
	Set the logging level used in this object. More...

void	set_was_used (bool tf) const

void	show (std::ostream &out=std::cout) const

const std::string &	get_name () const

void	set_name (std::string name)

Additional Inherited Members
Protected Member Functions inherited from IMP::domino::DisjointSetsSubsetFilterTable
	DisjointSetsSubsetFilterTable (ParticleStatesTable *pst, std::string name)

	DisjointSetsSubsetFilterTable (std::string name)

unsigned int	get_number_of_sets () const

kernel::ParticlesTemp	get_set (unsigned int i) const

Protected Member Functions inherited from IMP::base::Object
	Object (std::string name)
	Construct an object with the given name. More...

virtual void	do_destroy ()

Member Function Documentation

virtual double IMP::domino::EquivalenceSubsetFilterTable::get_strength	(	const IMP::domino::Subset &	s,
		const IMP::domino::Subsets &	prior_subsets
	)		const

virtual

The strength is a rough metric of how this filter restricts the subset.

It is still kind of nebulous, but as a rough guide, it should be the fraction of the states that are eliminated by the filter.

Implements IMP::domino::SubsetFilterTable.

virtual IMP::domino::SubsetFilter* IMP::domino::EquivalenceSubsetFilterTable::get_subset_filter	(	const IMP::domino::Subset &	s,
		const IMP::domino::Subsets &	prior_subsets
	)		const

virtual

Return a SubsetFilter which acts on the Subset s, given that all the prior_subsets have already been filtered. This should return nullptr if there is no filtering to be done.

Implements IMP::domino::SubsetFilterTable.

virtual ::IMP::base::VersionInfo IMP::domino::EquivalenceSubsetFilterTable::get_version_info ( ) const

virtual

Get information about the module and version of the object.

Reimplemented from IMP::base::Object.

Definition at line 238 of file subset_filters.h.

The documentation for this class was generated from the following file:

subset_filters.h

Detailed Description

Public Member Functions

Additional Inherited Members

Member Function Documentation