 |
IMP
2.3.0
The Integrative Modeling Platform
|
|
IMP
2.3.0
The Integrative Modeling Platform
|
#include <IMP/core/SphereDistancePairScore.h>
Inheritance diagram for IMP::core::SoftSpherePairScore:This class is equivalent to, but faster than a SphereDistancePairScore with a HarmonicLowerBound.
Definition at line 180 of file SphereDistancePairScore.h.
Public Member Functions | |
| SoftSpherePairScore (double k, std::string name="SoftSpherePairScore%1%") | |
| kernel::ModelObjectsTemp | do_get_inputs (kernel::Model *m, const kernel::ParticleIndexes &pis) const |
| double | evaluate_index (kernel::Model *m, const kernel::ParticleIndexPair &pip, DerivativeAccumulator *da) const |
| Compute the score and the derivative if needed. More... | |
| virtual std::string | get_type_name () const |
| virtual ::IMP::base::VersionInfo | get_version_info () const |
| Get information about the module and version of the object. More... | |
| Public Member Functions inherited from IMP::kernel::PairScore | |
| PairScore (std::string name="PairScore %1%") | |
| Restraints | create_current_decomposition (kernel::Model *m, const kernel::ParticleIndexPair &vt) const |
| virtual double | evaluate (const kernel::ParticlePair &vt, DerivativeAccumulator *da) const |
| Compute the score and the derivative if needed. More... | |
| virtual double | evaluate_if_good_index (kernel::Model *m, const kernel::ParticleIndexPair &vt, DerivativeAccumulator *da, double max) const |
| Compute the score and the derivative if needed. More... | |
| virtual double | evaluate_if_good_indexes (kernel::Model *m, const kernel::ParticleIndexPairs &o, DerivativeAccumulator *da, double max, unsigned int lower_bound, unsigned int upper_bound) const |
| virtual double | evaluate_indexes (kernel::Model *m, const kernel::ParticleIndexPairs &o, DerivativeAccumulator *da, unsigned int lower_bound, unsigned int upper_bound) const |
| Compute the score and the derivative if needed over a set. More... | |
| Public Member Functions inherited from IMP::kernel::ParticleInputs | |
| virtual ContainersTemp | get_input_containers (Particle *p) const |
| virtual ParticlesTemp | get_input_particles (Particle *p) const |
| ModelObjectsTemp | get_inputs (kernel::Model *m, const ParticleIndexes &pis) const |
| Public Member Functions inherited from IMP::base::Object | |
| virtual void | clear_caches () |
| CheckLevel | get_check_level () const |
| LogLevel | get_log_level () const |
| void | set_check_level (CheckLevel l) |
| void | set_log_level (LogLevel l) |
| Set the logging level used in this object. More... | |
| void | set_was_used (bool tf) const |
| void | show (std::ostream &out=std::cout) const |
| const std::string & | get_name () const |
| void | set_name (std::string name) |
Additional Inherited Members | |
| Public Types inherited from IMP::kernel::PairScore | |
| typedef kernel::ParticlePair | Argument |
| typedef kernel::ParticleIndexPair | IndexArgument |
| typedef PairModifier | Modifier |
|
typedef const kernel::ParticlePair & | PassArgument |
|
typedef const kernel::ParticleIndexPair & | PassIndexArgument |
| Protected Member Functions inherited from IMP::kernel::PairScore | |
| virtual Restraints | do_create_current_decomposition (kernel::Model *m, const kernel::ParticleIndexPair &vt) const |
| Protected Member Functions inherited from IMP::base::Object | |
| Object (std::string name) | |
| Construct an object with the given name. More... | |
| virtual void | do_destroy () |
|
virtual |
Overload this method to specify the inputs.
Reimplemented from IMP::kernel::ParticleInputs.
|
virtual |
Compute the score and the derivative if needed.
evaluate the score and the derivative if needed over vt
| m | the model of vt |
| vt | the index in m of an object of type ParticlePair |
| da | a derivative accumulator that reweighting computed derivatives. If nullptr, derivatives will not be computed |
Reimplemented from IMP::kernel::PairScore.
|
virtual |
Get information about the module and version of the object.
Reimplemented from IMP::base::Object.
Definition at line 180 of file SphereDistancePairScore.h.