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IMP
2.3.0
The Integrative Modeling Platform
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IMP
2.3.0
The Integrative Modeling Platform
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Super class for IMP test cases. More...
Inheritance diagram for IMP.test.TestCase:Super class for IMP test cases.
Definition at line 394 of file test/__init__.py.
Public Member Functions | |
| def | assertClassNames |
| Check that all the classes in the module follow the imp naming conventions. More... | |
| def | assertFunctionNames |
| Check that all the functions in the module follow the IMP naming conventions. More... | |
| def | assertShow |
| Check that all the classes in modulename have a show method. More... | |
| def | assertValueObjects |
| Check that all the C++ classes in the module are values or objects. More... | |
| def | assertXYZDerivativesInTolerance |
| Assert that x,y,z analytical derivatives match numerical within a tolerance, or a percentage (of the analytical value), whichever is larger. More... | |
| def | check_runnable_python_module |
| Check a Python module designed to be runnable with 'python -m' to make sure it supports standard command line options. More... | |
| def | check_unary_function_deriv |
| Check the unary function func's derivatives against numerical approximations between lb and ub. More... | |
| def | check_unary_function_min |
| Make sure that the minimum of the unary function func over the range between lb and ub is at expected_fmin. More... | |
| def | create_particles_in_box |
| Create a bunch of particles in a box. More... | |
| def | create_point_particle |
| Make a particle with optimizable x, y and z attributes, and add it to the model. More... | |
| def | failure_probability |
| Estimate how likely a given block of code is to raise an AssertionError. More... | |
| def | get_input_file_name |
| Get the full name of an input file in the top-level test directory. More... | |
| def | get_tmp_file_name |
| Get the full name of an output file in the tmp directory. More... | |
| def | open_input_file |
| Open and return an input file in the top-level test directory. More... | |
| def | particle_distance |
| Return distance between two given particles. More... | |
| def | probabilistic_test |
| Help handle a test which is expected to fail some fraction of the time. More... | |
| def | randomize_particles |
| Randomize the xyz coordinates of a list of particles. More... | |
| def | run_example |
| Run the named example script. More... | |
| def | run_python_module |
| Run a Python module as if with "python -m <modname>", with the given list of arguments as sys.argv. More... | |
| def IMP.test.TestCase.assertClassNames | ( | self, | |
| module, | |||
| exceptions, | |||
| words | |||
| ) |
Check that all the classes in the module follow the imp naming conventions.
Definition at line 603 of file test/__init__.py.
| def IMP.test.TestCase.assertFunctionNames | ( | self, | |
| module, | |||
| exceptions, | |||
| words | |||
| ) |
Check that all the functions in the module follow the IMP naming conventions.
Definition at line 705 of file test/__init__.py.
| def IMP.test.TestCase.assertShow | ( | self, | |
| modulename, | |||
| exceptions | |||
| ) |
Check that all the classes in modulename have a show method.
Definition at line 727 of file test/__init__.py.
| def IMP.test.TestCase.assertValueObjects | ( | self, | |
| module, | |||
| exceptions_list | |||
| ) |
Check that all the C++ classes in the module are values or objects.
Definition at line 551 of file test/__init__.py.
| def IMP.test.TestCase.assertXYZDerivativesInTolerance | ( | self, | |
| model, | |||
| xyz, | |||
tolerance = 0, |
|||
percentage = 0 |
|||
| ) |
Assert that x,y,z analytical derivatives match numerical within a tolerance, or a percentage (of the analytical value), whichever is larger.
Definition at line 437 of file test/__init__.py.
| def IMP.test.TestCase.check_runnable_python_module | ( | self, | |
| module | |||
| ) |
Check a Python module designed to be runnable with 'python -m' to make sure it supports standard command line options.
Definition at line 818 of file test/__init__.py.
| def IMP.test.TestCase.check_unary_function_deriv | ( | self, | |
| func, | |||
| lb, | |||
| ub, | |||
| step | |||
| ) |
Check the unary function func's derivatives against numerical approximations between lb and ub.
Definition at line 518 of file test/__init__.py.
| def IMP.test.TestCase.check_unary_function_min | ( | self, | |
| func, | |||
| lb, | |||
| ub, | |||
| step, | |||
| expected_fmin | |||
| ) |
Make sure that the minimum of the unary function func over the range between lb and ub is at expected_fmin.
Definition at line 526 of file test/__init__.py.
| def IMP.test.TestCase.create_particles_in_box | ( | self, | |
| model, | |||
num = 10, |
|||
lb = [0, |
|||
ub = [10 |
|||
| ) |
Create a bunch of particles in a box.
Definition at line 536 of file test/__init__.py.
| def IMP.test.TestCase.create_point_particle | ( | self, | |
| model, | |||
| x, | |||
| y, | |||
| z | |||
| ) |
Make a particle with optimizable x, y and z attributes, and add it to the model.
Definition at line 456 of file test/__init__.py.
| def IMP.test.TestCase.failure_probability | ( | self, | |
| testcall | |||
| ) |
Estimate how likely a given block of code is to raise an AssertionError.
Definition at line 484 of file test/__init__.py.
| def IMP.test.TestCase.get_input_file_name | ( | self, | |
| filename | |||
| ) |
Get the full name of an input file in the top-level test directory.
Definition at line 409 of file test/__init__.py.
| def IMP.test.TestCase.get_tmp_file_name | ( | self, | |
| filename | |||
| ) |
Get the full name of an output file in the tmp directory.
Definition at line 427 of file test/__init__.py.
| def IMP.test.TestCase.open_input_file | ( | self, | |
| filename, | |||
mode = 'rb' |
|||
| ) |
Open and return an input file in the top-level test directory.
Definition at line 423 of file test/__init__.py.
| def IMP.test.TestCase.particle_distance | ( | self, | |
| p1, | |||
| p2 | |||
| ) |
Return distance between two given particles.
Definition at line 508 of file test/__init__.py.
| def IMP.test.TestCase.probabilistic_test | ( | self, | |
| testcall, | |||
| chance_of_failure | |||
| ) |
Help handle a test which is expected to fail some fraction of the time.
The test is run multiple times and an exception is thrown only if it fails too many times.
Definition at line 465 of file test/__init__.py.
| def IMP.test.TestCase.randomize_particles | ( | self, | |
| particles, | |||
| deviation | |||
| ) |
Randomize the xyz coordinates of a list of particles.
Definition at line 497 of file test/__init__.py.
| def IMP.test.TestCase.run_example | ( | self, | |
| filename | |||
| ) |
Run the named example script.
A dictionary of all the script's global variables is returned. This can be queried in a test case to make sure the example performed correctly.
Definition at line 755 of file test/__init__.py.
| def IMP.test.TestCase.run_python_module | ( | self, | |
| module, | |||
| args | |||
| ) |
Run a Python module as if with "python -m <modname>", with the given list of arguments as sys.argv.
If module is an already-imported Python module, run its 'main' function and return the result.
If module is a string, run the module in a subprocess and return a subprocess.Popen-like object containing the child stdin, stdout and stderr.
Definition at line 786 of file test/__init__.py.