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IMP
2.3.0
The Integrative Modeling Platform
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IMP
2.3.0
The Integrative Modeling Platform
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Utility functions to manage SQL databases with sqlite3. More...
Utility functions to manage SQL databases with sqlite3.
Classes | |
| class | Database2 |
| Class to manage a SQL database built with sqlite3. More... | |
Functions | |
| def | get_sorting_indices |
| Return indices that sort the list l. More... | |
| def | merge_databases |
| Reads a table from a set of database files into a single file Makes sure to reorder all column names if neccesary before merging. More... | |
| def | print_data |
| Prints the data recovered from a database. More... | |
| def | write_data |
| writes data to a file. More... | |
| def IMP.em2d.Database.get_sorting_indices | ( | l | ) |
Return indices that sort the list l.
Definition at line 355 of file Database.py.
| def IMP.em2d.Database.merge_databases | ( | fns, | |
| fn_output, | |||
| tbl | |||
| ) |
Reads a table from a set of database files into a single file Makes sure to reorder all column names if neccesary before merging.
Definition at line 362 of file Database.py.
| def IMP.em2d.Database.print_data | ( | data, | |
delimiter = ' ' |
|||
| ) |
Prints the data recovered from a database.
Definition at line 314 of file Database.py.
| def IMP.em2d.Database.write_data | ( | data, | |
| output_file, | |||
delimiter = ' ' |
|||
| ) |
writes data to a file.
The output file is expected to be a python file object
Definition at line 321 of file Database.py.