IMP  2.0.0
The Integrative Modeling Platform
Class Index
A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X
  A  
DensityHeader (IMP::em)   InContainerPairFilter (IMP::container)   ParticleEmbedding (IMP::statistics)   SGEQsubSlaveArray (IMP.parallel)   
DensityMap (IMP::em)   InContainerQuadFilter (IMP::container)   ParticlesAdaptor (IMP::domino)   Shift (IMP::score_functor)   
AbstractGrid (IMP.isd.AbstractGrid)   DependencyScoreState (IMP::domino)   InContainerSingletonFilter (IMP::container)   ParticlesDummyRestraint (IMP::em2d)   Showable (IMP::base)   
AbstractService (IMP.isd.AbstractGrid)   DerivativeAccumulator (IMP::kernel)   InContainerTripletFilter (IMP::container)   ParticleStates (IMP::domino)   SimpleAssignmentsTable (IMP::domino)   
AddBoolFlag (IMP::base)   DerivativesFromRefined (IMP::core)   IncrementalScoringFunction (IMP::core)   ParticleStatesTable (IMP::domino)   SimpleConnectivity (IMP::restrainer)   
AddFloatFlag (IMP::base)   DerivativesToRefined (IMP::core)   Index (IMP::base)   PartitionalClustering (IMP::statistics)   SimpleDiameter (IMP::restrainer)   
AddIntFlag (IMP::base)   DiameterRestraint (IMP::core)   IndexException (IMP::base)   PartitionalClusteringWithCenter (IMP::statistics)   SimpleDistance (IMP::restrainer)   
AddScores (IMP::score_functor)   Diffusion (IMP::atom)   IndexStates (IMP::domino)   PCAAligner (IMP::em)   SimpleEMFit (IMP::restrainer)   
AddStringFlag (IMP::base)   Dihedral (IMP::atom)   IndexVector (IMP::base)   PCAFitRestraint (IMP::em)   SimpleExcludedVolume (IMP::restrainer)   
AlignmentClustering (IMP.multifit.cluster)   DihedralRestraint (IMP::core)   InitialDockingFromXlinks (IMP.em2d.buildxlinks)   PDBSelector (IMP::atom)   Simplex (IMP::gsl)   
AlignSymmetric (IMP::cnmultifit)   DihedralSingletonScore (IMP::atom)   InputAdaptor (IMP::base)   PeriodicOptimizerState (IMP::core)   Simulator (IMP::atom)   
AllBipartitePairContainer (IMP::container)   DirectorObjectChecker (IMP.test)   InternalException (IMP::base)   PermutationStates (IMP::domino)   SingletonConstraint (IMP::core)   
AllMol2Selector (IMP::atom)   DiscreteSampler (IMP::domino)   IOException (IMP::base)   piecewise_linear_distribution (IMP::base)   SingletonContainer (IMP::kernel)   
AllPairContainer (IMP::container)   DisjointSetsSubsetFilterTable (IMP::domino)   ISDRestraint (IMP::isd)   Pipe (IMP.isd.utils)   SingletonContainerAdaptor (IMP::kernel)   
AllPDBSelector (IMP::atom)   Display (IMP.restrainer)   IsosurfaceGeometry (IMP::display)   PivyWriter (IMP::display)   SingletonContainerSet (IMP::container)   
AllSamePairPredicate (IMP::core)   DistanceFilterTable (IMP::em2d)   
  J  
Plane3D (IMP::algebra)   SingletonContainerStatistics (IMP::container)   
AllSameQuadPredicate (IMP::core)   DistanceMask (IMP::em)   PlaneGeometry (IMP::display)   SingletonGeometry (IMP::display)   
AllSameSingletonPredicate (IMP::core)   DistancePairScore (IMP::score_functor)   JeffreysRestraint (IMP::isd)   Pointer (IMP::base)   SingletonModifier (IMP::kernel)   
AllSameTripletPredicate (IMP::core)   DistancePairScore (IMP::core)   JPGImageReaderWriter (IMP::em2d)   PointGeometry (IMP::display)   SingletonPredicate (IMP::kernel)   
AmbiguousNOERestraint (IMP::isd)   DistanceRestraint (IMP::core)   
  K  
PolarResamplingParameters (IMP::em2d)   SingletonRestraint (IMP::core)   
AmbiguousRestraint (IMP::isd)   DistributePairsScoreState (IMP::container)   PolygonGeometry (IMP::display)   SingletonsConstraint (IMP::container)   
Analysis (IMP.isd.Analysis)   DistributeQuadsScoreState (IMP::container)   KClosePairsPairScore (IMP::core)   PPDBSelector (IMP::atom)   SingletonScore (IMP::kernel)   
AndPDBSelector (IMP::atom)   DistributeSingletonsScoreState (IMP::container)   KernelParameters (IMP::em)   PredicatePairsRestraint (IMP::container)   SingletonsGeometry (IMP::display)   
Angle (IMP::atom)   DistributeTripletsScoreState (IMP::container)   Key (IMP::kernel)   PredicateQuadsRestraint (IMP::container)   SingletonsOptimizerState (IMP::container)   
AngleRestraint (IMP::core)   Distribution (IMP::saxs)   KMeans (IMP::kmeans)   PredicateSingletonScore (IMP::core)   SingletonsRestraint (IMP::container)   
AngleSingletonScore (IMP::atom)   DockOrder (IMP.em2d.buildxlinks)   
  L  
PredicateSingletonsRestraint (IMP::container)   SkinSurfaceGeometry (IMP::display)   
AngleTripletScore (IMP::core)   Domain (IMP::atom)   PredicateTripletsRestraint (IMP::container)   Slave (IMP.parallel)   
ApplicationTestCase (IMP.test)   DominoModel (IMP.em2d.DominoModel)   LabelGeometry (IMP::display)   PrincipalComponentAnalysisD (IMP::algebra)   SlaveArray (IMP.parallel)   
Array (IMP::base)   DominoSampler (IMP::domino)   LangevinThermostatOptimizerState (IMP::atom)   ProbabilisticSubsetFilterTable (IMP::domino)   Slice (IMP::domino)   
AssemblyHeader (IMP::multifit)   Dope (IMP::score_functor)   LeavesRefiner (IMP::core)   Profile (IMP::saxs)   SlidingPriorRestraint (IMP::isd)   
Assignment (IMP::domino)   DopePairScore (IMP::atom)   LennardJones (IMP::atom)   Profiler (IMP::benchmark)   SmoothingFunction (IMP::atom)   
AssignmentContainer (IMP::domino)   DummyRestraint (IMP::em2d)   LennardJonesPairScore (IMP::atom)   ProjectionFinder (IMP::em2d)   SoftCylinderPairScore (IMP::misc)   
AssignmentsTable (IMP::domino)   DynamicListPairContainer (IMP::container)   LessPairBySecond (IMP::em2d)   ProjectionMask (IMP::em2d)   SoftSpherePairScore (IMP::core)   
Atom (IMP::atom)   DynamicListQuadContainer (IMP::container)   Linear (IMP::core)   ProjectionParameters (IMP::em2d)   SolventAccessibleSurface (IMP::saxs)   
ATOMPDBSelector (IMP::atom)   DynamicListSingletonContainer (IMP::container)   Linear1DFunction (IMP::isd)   ProjectionParametersScoreState (IMP::em2d)   SparseGrid3D (IMP::algebra)   
AtomType (IMP::atom)   DynamicListTripletContainer (IMP::container)   LinearFit2D (IMP::algebra)   ProjectionStates (IMP::em2d)   SparseGridStorageD (IMP::algebra)   
AttributeSingletonPredicate (IMP::core)   DynamicNearestNeighbor3D (IMP::algebra)   LinearLowerBound (IMP::score_functor)   ProteinLigandAtomPairScore (IMP::atom)   SparseSymmetricPairMemoizer (IMP::base)   
  B  
  E  
ListAssignmentContainer (IMP::domino)   ProteinLigandRestraint (IMP::atom)   SparseUnboundedGrid3D (IMP::algebra)   
ListAssignmentsTable (IMP::domino)   ProteinsAnchorsSamplingSpace (IMP::multifit)   SparseUnboundedGridD (IMP::algebra)   
BallMover (IMP::core)   EdgePairGeometry (IMP::core)   ListPairContainer (IMP::container)   PymolWriter (IMP::display)   SphereD (IMP::algebra)   
BerendsenThermostatOptimizerState (IMP::atom)   EdgePairsGeometry (IMP::core)   ListQuadContainer (IMP::container)   PyroHandler (IMP.isd.PyroGrid)   SphereDistance (IMP::score_functor)   
BildWriter (IMP::display)   ElementTable (IMP::atom)   ListSingletonContainer (IMP::container)   PyroProxy (IMP.isd.PyroGrid)   SphereDistancePairScore (IMP::core)   
BinormalTerm (IMP::modeller)   Ellipsoid3D (IMP::algebra)   ListSubsetFilterTable (IMP::domino)   PythonDirectedGraph (IMP::kernel)   SphereDistanceToSingletonScore (IMP::core)   
BivariateFunction (IMP::isd)   EllipsoidGeometry (IMP::display)   ListTripletContainer (IMP::container)   
  Q  
SphereGeometry (IMP::display)   
Bond (IMP::atom)   Em2DRestraint (IMP::em2d)   LoadLink (IMP::rmf)   SpherePatch3D (IMP::algebra)   
Bonded (IMP::atom)   EM2DScore (IMP::em2d)   LocalSlave (IMP.parallel)   QuadConstraint (IMP::core)   SphericalVector3D (IMP::algebra)   
BondedPairFilter (IMP::atom)   Embedding (IMP::statistics)   LogEmbeddingD (IMP::algebra)   QuadContainer (IMP::kernel)   SpiderHeader (IMP::em)   
BondEndpointsRefiner (IMP::atom)   Entry (IMP.isd.Entry)   LogicalORRestraint (IMP::isd)   QuadContainerAdaptor (IMP::kernel)   SpiderImageReaderWriter (IMP::em2d)   
BondGeometry (IMP::atom)   EnvelopeFitRestraint (IMP::em)   LognormalRestraint (IMP::isd)   QuadContainerSet (IMP::container)   SpiderMapReaderWriter (IMP::em)   
BondGraph (IMP::atom)   EnvelopePenetrationRestraint (IMP::em)   LogPairScore (IMP::misc)   QuadContainerStatistics (IMP::container)   StateAdaptor (IMP::misc)   
BondPairContainer (IMP::atom)   EnvelopeScore (IMP::em)   LowestRefinedPairScore (IMP::misc)   QuadModifier (IMP::kernel)   Statistical (IMP::score_functor)   
BondsGeometry (IMP::atom)   EqualitySubsetFilterTable (IMP::domino)   LRUCache (IMP::base)   QuadPredicate (IMP::kernel)   StatisticalPairScore (IMP::core)   
BondSingletonScore (IMP::atom)   EquivalenceAndExclusionSubsetFilterTable (IMP::domino)   
  M  
QuadraticClosePairsFinder (IMP::core)   Statistics (IMP.isd.Statistics)   
BoundedGridRangeD (IMP::algebra)   EquivalenceSubsetFilterTable (IMP::domino)   QuadRestraint (IMP::core)   SteepestDescent (IMP::core)   
BoundingBoxD (IMP::algebra)   Error (IMP.parallel)   MaintainScaleOrderConstraint (IMP::isd)   QuadsConstraint (IMP::container)   StereochemistryPairFilter (IMP::atom)   
BoundingBoxGeometry (IMP::display)   EuclideanVectorKDMetric (IMP::algebra)   Manager (IMP.parallel)   QuadScore (IMP::kernel)   Subset (IMP::domino)   
BoxSweepClosePairsFinder (IMP::core)   EvaluationState (IMP::kernel)   map (IMP::base)   QuadsOptimizerState (IMP::container)   SubsetFilter (IMP::domino)   
BranchAndBoundAssignmentsTable (IMP::domino)   EventException (IMP::base)   MapDistanceTransform (IMP::em)   QuadsRestraint (IMP::container)   SubsetFilterTable (IMP::domino)   
BranchAndBoundSampler (IMP::domino)   EventPairsOptimizerState (IMP::container)   MapReaderWriter (IMP::em)   QuasiNewton (IMP::gsl)   SurfaceMeshGeometry (IMP::display)   
BrownianDynamics (IMP::atom)   EventQuadsOptimizerState (IMP::container)   MarginalHBondRestraint (IMP::isd)   
  R  
SurfaceShellDensityMap (IMP::em)   
  C  
EventSingletonsOptimizerState (IMP::container)   MarginalNOERestraint (IMP::isd)   Switching (IMP::isd)   
EventTripletsOptimizerState (IMP::container)   MasksManager (IMP::em2d)   RadialDistributionFunction (IMP::saxs)   
  T  
CAlphaPDBSelector (IMP::atom)   ExampleComplexRestraint (IMP::example)   Mass (IMP::atom)   RadiusDependentKernelParameters (IMP::em)   
CappedAssignmentContainer (IMP::domino)   ExampleConstraint (IMP::example)   MatchTemplateResult (IMP::em2d)   RadiusOfGyrationRestraint (IMP::multifit)   TableRefiner (IMP::core)   
CBetaPDBSelector (IMP::atom)   ExampleDecorator (IMP::example)   MaxVectorKDMetric (IMP::algebra)   RadiusOfGyrationRestraint (IMP::saxs)   TALOSReader (IMP.isd.TALOSReader)   
CenteredMat (IMP::em2d)   ExamplePairScore (IMP::example)   MCCGSampler (IMP::core)   RAII (IMP::base)   TALOSRestraint (IMP::isd)   
Centroid (IMP::core)   ExampleRefCounted (IMP::example)   Memoizer (IMP::base)   RangeViewAssignmentContainer (IMP::domino)   TestCase (IMP.test)   
CentroidOfRefined (IMP::core)   ExampleRestraint (IMP::example)   Metric (IMP::statistics)   ReadAssignmentContainer (IMP::domino)   TextInput (IMP::base)   
Chain (IMP::atom)   ExampleSingletonModifier (IMP::example)   MinimumPairRestraint (IMP::container)   ReadHDF5AssignmentContainer (IMP::domino)   TextOutput (IMP::base)   
ChainPDBSelector (IMP::atom)   ExampleSubsetFilterTable (IMP::example)   MinimumPairScore (IMP::container)   RecursiveAssignmentsTable (IMP::domino)   TextWriter (IMP::display)   
Charged (IMP::atom)   ExampleTemplateClassD (IMP::example)   MinimumQuadRestraint (IMP::container)   RecursivePartitionalClusteringEmbedding (IMP::statistics)   TrackedObject (IMP::base)   
CHARMMAtom (IMP::atom)   ExampleUnaryFunction (IMP::example)   MinimumQuadScore (IMP::container)   RecursivePartitionalClusteringMetric (IMP::statistics)   Tracker (IMP::base)   
CHARMMAtomTopology (IMP::atom)   Exception (IMP::base)   MinimumRestraint (IMP::core)   RecursiveStates (IMP::domino)   Transform (IMP::core)   
CHARMMBondEndpoint (IMP::atom)   ExcludedVolumeRestraint (IMP::core)   MinimumRestraintScoreSubsetFilterTable (IMP::domino)   RefCountChecker (IMP.test)   Transformation2D (IMP::algebra)   
CHARMMBondParameters (IMP::atom)   ExclusionSubsetFilterTable (IMP::domino)   MinimumSingletonRestraint (IMP::container)   RefCounted (IMP::base)   Transformation3D (IMP::algebra)   
CHARMMConnection (IMP::atom)   ExclusiveConsecutivePairContainer (IMP::container)   MinimumSingletonScore (IMP::container)   Reference (IMP::core)   TransformationAndReflectionSymmetry (IMP::core)   
CHARMMDihedralParameters (IMP::atom)   ExclusiveConsecutivePairFilter (IMP::container)   MinimumTripletRestraint (IMP::container)   ReferenceFrame3D (IMP::algebra)   TransformationSymmetry (IMP::core)   
CHARMMIdealResidueTopology (IMP::atom)   ExtendedGridIndexD (IMP::algebra)   MinimumTripletScore (IMP::container)   ReferenceFrameGeometry (IMP::display)   TransformedDistancePairScore (IMP::core)   
CHARMMInternalCoordinate (IMP::atom)   
  F  
Model (IMP::kernel)   RefinedPairsPairScore (IMP::core)   Triangle3D (IMP::algebra)   
CHARMMParameters (IMP::atom)   ModelException (IMP::base)   Refiner (IMP::kernel)   TriangleGeometry (IMP::display)   
CHARMMPatch (IMP::atom)   FIFOBasedRemoteObject (IMP.isd.FIFOBasedGrid)   ModellerRestraints (IMP.modeller)   Reflection3D (IMP::algebra)   TripletConstraint (IMP::core)   
CHARMMResidueTopology (IMP::atom)   FileBasedRemoteObject (IMP.isd.FileBasedGrid)   ModelLoader (IMP.modeller)   RegistrationResult (IMP::em2d)   TripletContainer (IMP::kernel)   
CHARMMResidueTopologyBase (IMP::atom)   FilterGeometry (IMP::display)   ModelObject (IMP::kernel)   RemoteError (IMP.parallel)   TripletContainerAdaptor (IMP::kernel)   
CHARMMSegmentTopology (IMP::atom)   Fine2DRegistrationRestraint (IMP::em2d)   ModifierVisitor (IMP::core)   RemoveRigidMotionOptimizerState (IMP::atom)   TripletContainerSet (IMP::container)   
CHARMMStereochemistryRestraint (IMP::atom)   FitRestraint (IMP::em)   Mol2Selector (IMP::atom)   RemoveTranslationOptimizerState (IMP::atom)   TripletContainerStatistics (IMP::container)   
CHARMMTopology (IMP::atom)   FittingSolutionRecord (IMP::multifit)   MolecularDynamics (IMP::atom)   Representation (IMP.restrainer)   TripletModifier (IMP::kernel)   
ChecksScoreState (IMP::core)   FittingSolutions (IMP::em)   MolecularDynamics (IMP::isd)   RepulsiveDistancePairScore (IMP::isd)   TripletPredicate (IMP::kernel)   
ChildrenRefiner (IMP::core)   FittingStates (IMP::multifit)   MolecularDynamicsMover (IMP::isd)   Residue (IMP::atom)   TripletRestraint (IMP::core)   
ChimeraWriter (IMP::display)   FixedRefiner (IMP::core)   Molecule (IMP::atom)   ResidueRotamer (IMP::rotamer)   TripletsConstraint (IMP::container)   
ChiSquaredScore (IMP::em2d)   FixedXYZ (IMP::algebra)   MonteCarlo (IMP::core)   ResidueType (IMP::atom)   TripletScore (IMP::kernel)   
CloseBipartitePairContainer (IMP::container)   FixedZXZ (IMP::algebra)   MonteCarloMover (IMP::core)   Restraint (IMP::saxs)   TripletsOptimizerState (IMP::container)   
ClosedCubicSpline (IMP::core)   FixedZYZ (IMP::algebra)   MonteCarloMoverResult (IMP::core)   Restraint (IMP.restrainer)   TripletsRestraint (IMP::container)   
ClosePairContainer (IMP::container)   FloatIndex (IMP::kernel)   MonteCarloRelativeMoves (IMP.em2d.MonteCarloRelativeMoves)   Restraint (IMP::kernel)   TruncatedHarmonic (IMP::core)   
ClosePairsFinder (IMP::core)   FNormal (IMP::isd)   MonteCarloWithBasinHopping (IMP::core)   RestraintCache (IMP::domino)   Typed (IMP::core)   
ClosePairsPairScore (IMP::core)   ForceFieldParameters (IMP::atom)   MonteCarloWithLocalOptimization (IMP::core)   RestraintGeometry (IMP::display)   TypedPairScore (IMP::core)   
ClusterRecord (IMP.em2d.solutions_io)   ForceSwitch (IMP::atom)   Mover (IMP::core)   RestraintScoreSubsetFilterTable (IMP::domino)   
  U  
CMMWriter (IMP::display)   FormFactorTable (IMP::saxs)   MoverBase (IMP::core)   RestraintSet (IMP::kernel)   
CoarseCC (IMP::em)   Fragment (IMP::atom)   MoveStatisticsScoreState (IMP::core)   RestraintSetGeometry (IMP::display)   UnaryFunction (IMP::kernel)   
CoarseCCatIntervals (IMP::em)   
  G  
MRCReaderWriter (IMP::em)   RestraintsScoringFunction (IMP::core)   UnaryFunctionEvaluate (IMP::score_functor)   
CoarseConvolution (IMP::em)   MSConnectivityRestraint (IMP::core)   RestraintStatistics (IMP::kernel)   UnboundedGridRangeD (IMP::algebra)   
CoinFlipPairPredicate (IMP::core)   GaussianProcessInterpolation (IMP::isd)   MultipleBinormalRestraint (IMP::modeller)   Result (IMP.isd.AbstractGrid)   UncheckedWeakPointer (IMP::base)   
CoinFlipQuadPredicate (IMP::core)   GaussianProcessInterpolationRestraint (IMP::isd)   MultivariateFNormalSufficient (IMP::isd)   ResultsDB (IMP.em2d.solutions_io)   Undecorator (IMP::kernel)   
CoinFlipSingletonPredicate (IMP::core)   GaussianRestraint (IMP::isd)   MyMetric (write_a_metric)   RigidBody (IMP::core)   UnivariateFunction (IMP::isd)   
CoinFlipTripletPredicate (IMP::core)   GeneralizedGuinierPorodFunction (IMP::isd)   
  N  
RigidBodyDerivativeGeometry (IMP::core)   UnorderedTypePairPredicate (IMP::core)   
Color (IMP::display)   GenericAttributeSingletonScore (IMP::core)   RigidBodyDerivativesGeometry (IMP::core)   UnorderedTypeQuadPredicate (IMP::core)   
Colored (IMP::display)   GenericBoundingBox3DSingletonScore (IMP::core)   NearestNeighborD (IMP::algebra)   RigidBodyDiffusion (IMP::atom)   UnorderedTypeSingletonPredicate (IMP::core)   
CommandDispatcher (IMP.kernel)   GenericDistanceToSingletonScore (IMP::core)   NearestNeighborsClosePairsFinder (IMP::core)   RigidBodyDistancePairScore (IMP::core)   UnorderedTypeTripletPredicate (IMP::core)   
CommonEndpointPairFilter (IMP::misc)   GenericScopedRemoveRestraint (IMP::kernel)   NestedRigidBodyStates (IMP::domino)   RigidBodyFrameGeometry (IMP::core)   UsageException (IMP::base)   
ComplementarityRestraint (IMP::multifit)   GenericScopedRemoveScoreState (IMP::kernel)   NetworkError (IMP.parallel)   RigidBodyFramesGeometry (IMP::core)   
  V  
ComponentHeader (IMP::multifit)   GenericScopedRestraint (IMP::kernel)   NOERestraint (IMP::isd)   RigidBodyHierarchyGeometry (IMP::core)   
CompoundStates (IMP::domino)   GenericScopedScoreState (IMP::kernel)   NoMoreSlavesError (IMP.parallel)   RigidBodyMover (IMP::core)   Value (IMP::base)   
Cone3D (IMP::algebra)   GeometricPrimitiveD (IMP::algebra)   NonAlternativePDBSelector (IMP::atom)   RigidBodyStates (IMP::domino)   ValueException (IMP::base)   
Configuration (IMP::kernel)   Geometry (IMP::display)   NonCopyable (IMP::base)   RigidBodyTorque (IMP::core)   Vector (IMP::base)   
ConfigurationSet (IMP::kernel)   GeometryProcessor (IMP::display)   NonHydrogenMol2Selector (IMP::atom)   RigidClosePairsFinder (IMP::core)   VectorD (IMP::algebra)   
ConfigurationSetRMSDMetric (IMP::statistics)   GeometrySet (IMP::display)   NonRigidMember (IMP::core)   RigidMember (IMP::core)   VectorDEmbedding (IMP::statistics)   
ConfigurationSetXYZEmbedding (IMP::statistics)   GridClosePairsFinder (IMP::core)   NonWaterNonHydrogenPDBSelector (IMP::atom)   RMSDCalculator (IMP::atom)   VectorInputD (IMP::algebra)   
ConjugateGradients (IMP::core)   GridD (IMP::algebra)   NonWaterPDBSelector (IMP::atom)   RMSDClustering (IMP::multifit)   VectorInputD< 1 > (IMP::algebra)   
ConjugateGradients (IMP::gsl)   GridIndexD (IMP::algebra)   NormalizedSphereDistancePairScore (IMP::core)   RotamerAngleTuple (IMP::rotamer)   VectorKDMetric (IMP::algebra)   
ConnectingPairContainer (IMP::container)   GridStates (IMP::em2d)   NormalMover (IMP::core)   RotamerCalculator (IMP::rotamer)   VelocityScalingOptimizerState (IMP::atom)   
ConnectivityRestraint (IMP::core)   GSLOptimizer (IMP::gsl)   NotPDBSelector (IMP::atom)   RotamerLibrary (IMP::rotamer)   VersionInfo (IMP::base)   
ConsecutivePairContainer (IMP::container)   
  H  
NPDBSelector (IMP::atom)   Rotation2D (IMP::algebra)   VolumeRestraint (IMP::core)   
ConsecutivePairFilter (IMP::container)   Nuisance (IMP::isd)   Rotation3D (IMP::algebra)   vonMises (IMP::isd)   
ConstantPairPredicate (IMP::core)   Harmonic (IMP::score_functor)   
  O  
RunInTempDir (IMP.test)   vonMisesKappaConjugateRestraint (IMP::isd)   
ConstantQuadPredicate (IMP::core)   Harmonic (IMP::core)   
  S  
vonMisesKappaJeffreysRestraint (IMP::isd)   
ConstantRestraint (IMP::core)   HarmonicDistancePairScore (IMP::core)   Object (IMP::base)   vonMisesSufficient (IMP::isd)   
ConstantSingletonPredicate (IMP::core)   HarmonicLowerBound (IMP::score_functor)   OpenCubicSpline (IMP::core)   SameResiduePairFilter (IMP::atom)   Voxel (IMP::em)   
ConstantTripletPredicate (IMP::core)   HarmonicLowerBound (IMP::core)   OpenCubicSpline (IMP::score_functor)   SampleAssignmentContainer (IMP::domino)   
  W  
Constraint (IMP::kernel)   HarmonicSphereDistancePairScore (IMP::core)   Optimizer (IMP::kernel)   SampledDensityMap (IMP::em)   
ConstVector (IMP::base)   HarmonicUpperBound (IMP::score_functor)   OptimizerState (IMP::kernel)   Sampler (IMP::kernel)   WarningContext (IMP::base)   
Container (IMP::kernel)   HarmonicUpperBound (IMP::core)   OptionParser (IMP.kernel)   SaveLink (IMP::rmf)   WaterPDBSelector (IMP::atom)   
Context (IMP.parallel)   HarmonicUpperBoundSphereDiameterPairScore (IMP::core)   Order (IMP::domino)   SaveOptimizerState (IMP::rmf)   WeakPointer (IMP::base)   
Copy (IMP::atom)   HarmonicUpperBoundSphereDistancePairScore (IMP::core)   OrderedTypePairPredicate (IMP::core)   Scale (IMP::isd)   WeightedExcludedVolumeRestraint (IMP::multifit)   
Cosine (IMP::core)   HarmonicWell (IMP::core)   OrderedTypeQuadPredicate (IMP::core)   ScopedAddCacheAttribute (IMP::kernel)   WeightedSphereDistancePairScore (IMP::core)   
CoulombPairScore (IMP::atom)   HasHigherCCC (IMP::em2d)   OrderedTypeSingletonPredicate (IMP::core)   ScopedSetAttribute (IMP::kernel)   WeightScore (IMP::score_functor)   
Covariance1DFunction (IMP::isd)   HasLowerScore (IMP::em2d)   OrderedTypeTripletPredicate (IMP::core)   Score (IMP::score_functor)   WormLikeChain (IMP::misc)   
Cover (IMP::core)   HeapAssignmentContainer (IMP::domino)   OrPDBSelector (IMP::atom)   ScoreAccumulator (IMP::kernel)   WriteAssignmentContainer (IMP::domino)   
CoverBond (IMP::atom)   HeapRecord (IMP.em2d.solutions_io)   OwnerPointer (IMP::base)   ScoreFunction (IMP::em2d)   WriteHDF5AssignmentContainer (IMP::domino)   
CoverRefined (IMP::core)   HierarchiesGeometry (IMP::atom)   
  P  
ScoreState (IMP::kernel)   WriteOptimizerState (IMP::display)   
CPDBSelector (IMP::atom)   Hierarchy (IMP::atom)   ScoreUnaryFunction (IMP::score_functor)   WritePDBOptimizerState (IMP::atom)   
CreateLogContext (IMP::base)   Hierarchy (IMP::core)   PackedAssignmentContainer (IMP::domino)   ScoringFunction (IMP::kernel)   Writer (IMP::display)   
CustomXYZR (IMP::misc)   HierarchyCounter (IMP::core)   PairConstraint (IMP::core)   ScoringFunctionAdaptor (IMP::kernel)   WriterAdaptor (IMP::display)   
CvEstimator (IMP.isd.TuneRex)   HierarchyGeometry (IMP::atom)   PairContainer (IMP::kernel)   SecondaryStructureResidue (IMP::atom)   WriteRestraintScoresOptimizerState (IMP::core)   
Cylinder3D (IMP::algebra)   HierarchyTraits (IMP::core)   PairContainerAdaptor (IMP::kernel)   Segment3D (IMP::algebra)   
  X  
CylinderGeometry (IMP::display)   HierarchyVisitor (IMP::core)   PairContainerSet (IMP::container)   SegmentationParameters (IMP::em2d)   
  D  
HighDensityEmbedding (IMP::em)   PairContainerStatistics (IMP::container)   SegmentGeometry (IMP::display)   Xlink (IMP.em2d.buildxlinks)   
Histogram (IMP::statistics)   PairGeometry (IMP::display)   Selection (IMP::atom)   XlinksDict (IMP.em2d.buildxlinks)   
Database2 (IMP.em2d.Database)   HistogramD (IMP::statistics)   PairListSubsetFilterTable (IMP::domino)   SelectionGeometry (IMP::atom)   XMLDisplay (IMP.restrainer)   
DataObject (IMP::core)   History (IMP.isd.History)   PairModifier (IMP::kernel)   SerialMover (IMP::core)   XMLRepresentation (IMP.restrainer)   
DataPointsAssignment (IMP::multifit)   HybridMonteCarlo (IMP::isd)   PairPredicate (IMP::kernel)   Server (IMP.isd.AbstractGrid)   XMLRestraint (IMP.restrainer)   
DecayPairContainerOptimizerState (IMP::misc)   HydrogenPDBSelector (IMP::atom)   PairRestraint (IMP::core)   set (IMP::base)   XYZ (IMP::core)   
Decorator (IMP::kernel)   
  I  
PairsConstraint (IMP::container)   SetCheckState (IMP::base)   XYZDerivativeGeometry (IMP::core)   
DefaultEmbeddingD (IMP::algebra)   PairScore (IMP::kernel)   SetLogState (IMP::base)   XYZDerivativesGeometry (IMP::core)   
DeltaDistributionFunction (IMP::saxs)   Image (IMP::em2d)   PairsGeometry (IMP::display)   SetLogTarget (IMP::base)   XYZR (IMP::core)   
DenseGrid3D (IMP::algebra)   ImageHeader (IMP::em)   PairsOptimizerState (IMP::container)   SetNumberOfThreads (IMP::base)   XYZRGeometry (IMP::core)   
DenseGridStorageD (IMP::algebra)   IMPRestraints (IMP.modeller)   PairsRestraint (IMP::container)   SettingsData (IMP::multifit)   XYZRsGeometry (IMP::core)   
DensityDataPoints (IMP::multifit)   ImproperSingletonScore (IMP::atom)   ParabolicFit2D (IMP::algebra)   sfo_common (IMP.isd.shared_functions)   XYZStates (IMP::domino)   
DensityFillingRestraint (IMP::em)   InBoundingBox3DSingletonPredicate (IMP::core)   Particle (IMP::kernel)   SGEPESlaveArray (IMP.parallel)   
A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X