IMP
2.0.0
The Integrative Modeling Platform
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X
A
DensityHeader
(
IMP::em
)
InContainerPairFilter
(
IMP::container
)
ParticleEmbedding
(
IMP::statistics
)
SGEQsubSlaveArray
(
IMP.parallel
)
DensityMap
(
IMP::em
)
InContainerQuadFilter
(
IMP::container
)
ParticlesAdaptor
(
IMP::domino
)
Shift
(
IMP::score_functor
)
AbstractGrid
(IMP.isd.AbstractGrid)
DependencyScoreState
(
IMP::domino
)
InContainerSingletonFilter
(
IMP::container
)
ParticlesDummyRestraint
(
IMP::em2d
)
Showable
(
IMP::base
)
AbstractService
(IMP.isd.AbstractGrid)
DerivativeAccumulator
(
IMP::kernel
)
InContainerTripletFilter
(
IMP::container
)
ParticleStates
(
IMP::domino
)
SimpleAssignmentsTable
(
IMP::domino
)
AddBoolFlag
(
IMP::base
)
DerivativesFromRefined
(
IMP::core
)
IncrementalScoringFunction
(
IMP::core
)
ParticleStatesTable
(
IMP::domino
)
SimpleConnectivity
(
IMP::restrainer
)
AddFloatFlag
(
IMP::base
)
DerivativesToRefined
(
IMP::core
)
Index
(
IMP::base
)
PartitionalClustering
(
IMP::statistics
)
SimpleDiameter
(
IMP::restrainer
)
AddIntFlag
(
IMP::base
)
DiameterRestraint
(
IMP::core
)
IndexException
(
IMP::base
)
PartitionalClusteringWithCenter
(
IMP::statistics
)
SimpleDistance
(
IMP::restrainer
)
AddScores
(
IMP::score_functor
)
Diffusion
(
IMP::atom
)
IndexStates
(
IMP::domino
)
PCAAligner
(
IMP::em
)
SimpleEMFit
(
IMP::restrainer
)
AddStringFlag
(
IMP::base
)
Dihedral
(
IMP::atom
)
IndexVector
(
IMP::base
)
PCAFitRestraint
(
IMP::em
)
SimpleExcludedVolume
(
IMP::restrainer
)
AlignmentClustering
(IMP.multifit.cluster)
DihedralRestraint
(
IMP::core
)
InitialDockingFromXlinks
(IMP.em2d.buildxlinks)
PDBSelector
(
IMP::atom
)
Simplex
(
IMP::gsl
)
AlignSymmetric
(
IMP::cnmultifit
)
DihedralSingletonScore
(
IMP::atom
)
InputAdaptor
(
IMP::base
)
PeriodicOptimizerState
(
IMP::core
)
Simulator
(
IMP::atom
)
AllBipartitePairContainer
(
IMP::container
)
DirectorObjectChecker
(IMP.test)
InternalException
(
IMP::base
)
PermutationStates
(
IMP::domino
)
SingletonConstraint
(
IMP::core
)
AllMol2Selector
(
IMP::atom
)
DiscreteSampler
(
IMP::domino
)
IOException
(
IMP::base
)
piecewise_linear_distribution
(
IMP::base
)
SingletonContainer
(
IMP::kernel
)
AllPairContainer
(
IMP::container
)
DisjointSetsSubsetFilterTable
(
IMP::domino
)
ISDRestraint
(
IMP::isd
)
Pipe
(IMP.isd.utils)
SingletonContainerAdaptor
(
IMP::kernel
)
AllPDBSelector
(
IMP::atom
)
Display
(
IMP.restrainer
)
IsosurfaceGeometry
(
IMP::display
)
PivyWriter
(
IMP::display
)
SingletonContainerSet
(
IMP::container
)
AllSamePairPredicate
(
IMP::core
)
DistanceFilterTable
(
IMP::em2d
)
J
Plane3D
(
IMP::algebra
)
SingletonContainerStatistics
(
IMP::container
)
AllSameQuadPredicate
(
IMP::core
)
DistanceMask
(
IMP::em
)
PlaneGeometry
(
IMP::display
)
SingletonGeometry
(
IMP::display
)
AllSameSingletonPredicate
(
IMP::core
)
DistancePairScore
(
IMP::score_functor
)
JeffreysRestraint
(
IMP::isd
)
Pointer
(
IMP::base
)
SingletonModifier
(
IMP::kernel
)
AllSameTripletPredicate
(
IMP::core
)
DistancePairScore
(
IMP::core
)
JPGImageReaderWriter
(
IMP::em2d
)
PointGeometry
(
IMP::display
)
SingletonPredicate
(
IMP::kernel
)
AmbiguousNOERestraint
(
IMP::isd
)
DistanceRestraint
(
IMP::core
)
K
PolarResamplingParameters
(
IMP::em2d
)
SingletonRestraint
(
IMP::core
)
AmbiguousRestraint
(
IMP::isd
)
DistributePairsScoreState
(
IMP::container
)
PolygonGeometry
(
IMP::display
)
SingletonsConstraint
(
IMP::container
)
Analysis
(IMP.isd.Analysis)
DistributeQuadsScoreState
(
IMP::container
)
KClosePairsPairScore
(
IMP::core
)
PPDBSelector
(
IMP::atom
)
SingletonScore
(
IMP::kernel
)
AndPDBSelector
(
IMP::atom
)
DistributeSingletonsScoreState
(
IMP::container
)
KernelParameters
(
IMP::em
)
PredicatePairsRestraint
(
IMP::container
)
SingletonsGeometry
(
IMP::display
)
Angle
(
IMP::atom
)
DistributeTripletsScoreState
(
IMP::container
)
Key
(
IMP::kernel
)
PredicateQuadsRestraint
(
IMP::container
)
SingletonsOptimizerState
(
IMP::container
)
AngleRestraint
(
IMP::core
)
Distribution
(
IMP::saxs
)
KMeans
(
IMP::kmeans
)
PredicateSingletonScore
(
IMP::core
)
SingletonsRestraint
(
IMP::container
)
AngleSingletonScore
(
IMP::atom
)
DockOrder
(IMP.em2d.buildxlinks)
L
PredicateSingletonsRestraint
(
IMP::container
)
SkinSurfaceGeometry
(
IMP::display
)
AngleTripletScore
(
IMP::core
)
Domain
(
IMP::atom
)
PredicateTripletsRestraint
(
IMP::container
)
Slave
(
IMP.parallel
)
ApplicationTestCase
(IMP.test)
DominoModel
(IMP.em2d.DominoModel)
LabelGeometry
(
IMP::display
)
PrincipalComponentAnalysisD
(
IMP::algebra
)
SlaveArray
(
IMP.parallel
)
Array
(
IMP::base
)
DominoSampler
(
IMP::domino
)
LangevinThermostatOptimizerState
(
IMP::atom
)
ProbabilisticSubsetFilterTable
(
IMP::domino
)
Slice
(
IMP::domino
)
AssemblyHeader
(
IMP::multifit
)
Dope
(
IMP::score_functor
)
LeavesRefiner
(
IMP::core
)
Profile
(
IMP::saxs
)
SlidingPriorRestraint
(
IMP::isd
)
Assignment
(
IMP::domino
)
DopePairScore
(
IMP::atom
)
LennardJones
(
IMP::atom
)
Profiler
(
IMP::benchmark
)
SmoothingFunction
(
IMP::atom
)
AssignmentContainer
(
IMP::domino
)
DummyRestraint
(
IMP::em2d
)
LennardJonesPairScore
(
IMP::atom
)
ProjectionFinder
(
IMP::em2d
)
SoftCylinderPairScore
(
IMP::misc
)
AssignmentsTable
(
IMP::domino
)
DynamicListPairContainer
(
IMP::container
)
LessPairBySecond
(
IMP::em2d
)
ProjectionMask
(
IMP::em2d
)
SoftSpherePairScore
(
IMP::core
)
Atom
(
IMP::atom
)
DynamicListQuadContainer
(
IMP::container
)
Linear
(
IMP::core
)
ProjectionParameters
(
IMP::em2d
)
SolventAccessibleSurface
(
IMP::saxs
)
ATOMPDBSelector
(
IMP::atom
)
DynamicListSingletonContainer
(
IMP::container
)
Linear1DFunction
(
IMP::isd
)
ProjectionParametersScoreState
(
IMP::em2d
)
SparseGrid3D
(
IMP::algebra
)
AtomType
(
IMP::atom
)
DynamicListTripletContainer
(
IMP::container
)
LinearFit2D
(
IMP::algebra
)
ProjectionStates
(
IMP::em2d
)
SparseGridStorageD
(
IMP::algebra
)
AttributeSingletonPredicate
(
IMP::core
)
DynamicNearestNeighbor3D
(
IMP::algebra
)
LinearLowerBound
(
IMP::score_functor
)
ProteinLigandAtomPairScore
(
IMP::atom
)
SparseSymmetricPairMemoizer
(
IMP::base
)
B
E
ListAssignmentContainer
(
IMP::domino
)
ProteinLigandRestraint
(
IMP::atom
)
SparseUnboundedGrid3D
(
IMP::algebra
)
ListAssignmentsTable
(
IMP::domino
)
ProteinsAnchorsSamplingSpace
(
IMP::multifit
)
SparseUnboundedGridD
(
IMP::algebra
)
BallMover
(
IMP::core
)
EdgePairGeometry
(
IMP::core
)
ListPairContainer
(
IMP::container
)
PymolWriter
(
IMP::display
)
SphereD
(
IMP::algebra
)
BerendsenThermostatOptimizerState
(
IMP::atom
)
EdgePairsGeometry
(
IMP::core
)
ListQuadContainer
(
IMP::container
)
PyroHandler
(IMP.isd.PyroGrid)
SphereDistance
(
IMP::score_functor
)
BildWriter
(
IMP::display
)
ElementTable
(
IMP::atom
)
ListSingletonContainer
(
IMP::container
)
PyroProxy
(IMP.isd.PyroGrid)
SphereDistancePairScore
(
IMP::core
)
BinormalTerm
(
IMP::modeller
)
Ellipsoid3D
(
IMP::algebra
)
ListSubsetFilterTable
(
IMP::domino
)
PythonDirectedGraph
(
IMP::kernel
)
SphereDistanceToSingletonScore
(
IMP::core
)
BivariateFunction
(
IMP::isd
)
EllipsoidGeometry
(
IMP::display
)
ListTripletContainer
(
IMP::container
)
Q
SphereGeometry
(
IMP::display
)
Bond
(
IMP::atom
)
Em2DRestraint
(
IMP::em2d
)
LoadLink
(
IMP::rmf
)
SpherePatch3D
(
IMP::algebra
)
Bonded
(
IMP::atom
)
EM2DScore
(
IMP::em2d
)
LocalSlave
(
IMP.parallel
)
QuadConstraint
(
IMP::core
)
SphericalVector3D
(
IMP::algebra
)
BondedPairFilter
(
IMP::atom
)
Embedding
(
IMP::statistics
)
LogEmbeddingD
(
IMP::algebra
)
QuadContainer
(
IMP::kernel
)
SpiderHeader
(
IMP::em
)
BondEndpointsRefiner
(
IMP::atom
)
Entry
(IMP.isd.Entry)
LogicalORRestraint
(
IMP::isd
)
QuadContainerAdaptor
(
IMP::kernel
)
SpiderImageReaderWriter
(
IMP::em2d
)
BondGeometry
(
IMP::atom
)
EnvelopeFitRestraint
(
IMP::em
)
LognormalRestraint
(
IMP::isd
)
QuadContainerSet
(
IMP::container
)
SpiderMapReaderWriter
(
IMP::em
)
BondGraph
(
IMP::atom
)
EnvelopePenetrationRestraint
(
IMP::em
)
LogPairScore
(
IMP::misc
)
QuadContainerStatistics
(
IMP::container
)
StateAdaptor
(
IMP::misc
)
BondPairContainer
(
IMP::atom
)
EnvelopeScore
(
IMP::em
)
LowestRefinedPairScore
(
IMP::misc
)
QuadModifier
(
IMP::kernel
)
Statistical
(
IMP::score_functor
)
BondsGeometry
(
IMP::atom
)
EqualitySubsetFilterTable
(
IMP::domino
)
LRUCache
(
IMP::base
)
QuadPredicate
(
IMP::kernel
)
StatisticalPairScore
(
IMP::core
)
BondSingletonScore
(
IMP::atom
)
EquivalenceAndExclusionSubsetFilterTable
(
IMP::domino
)
M
QuadraticClosePairsFinder
(
IMP::core
)
Statistics
(IMP.isd.Statistics)
BoundedGridRangeD
(
IMP::algebra
)
EquivalenceSubsetFilterTable
(
IMP::domino
)
QuadRestraint
(
IMP::core
)
SteepestDescent
(
IMP::core
)
BoundingBoxD
(
IMP::algebra
)
Error
(
IMP.parallel
)
MaintainScaleOrderConstraint
(
IMP::isd
)
QuadsConstraint
(
IMP::container
)
StereochemistryPairFilter
(
IMP::atom
)
BoundingBoxGeometry
(
IMP::display
)
EuclideanVectorKDMetric
(
IMP::algebra
)
Manager
(
IMP.parallel
)
QuadScore
(
IMP::kernel
)
Subset
(
IMP::domino
)
BoxSweepClosePairsFinder
(
IMP::core
)
EvaluationState
(
IMP::kernel
)
map
(
IMP::base
)
QuadsOptimizerState
(
IMP::container
)
SubsetFilter
(
IMP::domino
)
BranchAndBoundAssignmentsTable
(
IMP::domino
)
EventException
(
IMP::base
)
MapDistanceTransform
(
IMP::em
)
QuadsRestraint
(
IMP::container
)
SubsetFilterTable
(
IMP::domino
)
BranchAndBoundSampler
(
IMP::domino
)
EventPairsOptimizerState
(
IMP::container
)
MapReaderWriter
(
IMP::em
)
QuasiNewton
(
IMP::gsl
)
SurfaceMeshGeometry
(
IMP::display
)
BrownianDynamics
(
IMP::atom
)
EventQuadsOptimizerState
(
IMP::container
)
MarginalHBondRestraint
(
IMP::isd
)
R
SurfaceShellDensityMap
(
IMP::em
)
C
EventSingletonsOptimizerState
(
IMP::container
)
MarginalNOERestraint
(
IMP::isd
)
Switching
(
IMP::isd
)
EventTripletsOptimizerState
(
IMP::container
)
MasksManager
(
IMP::em2d
)
RadialDistributionFunction
(
IMP::saxs
)
T
CAlphaPDBSelector
(
IMP::atom
)
ExampleComplexRestraint
(
IMP::example
)
Mass
(
IMP::atom
)
RadiusDependentKernelParameters
(
IMP::em
)
CappedAssignmentContainer
(
IMP::domino
)
ExampleConstraint
(
IMP::example
)
MatchTemplateResult
(
IMP::em2d
)
RadiusOfGyrationRestraint
(
IMP::multifit
)
TableRefiner
(
IMP::core
)
CBetaPDBSelector
(
IMP::atom
)
ExampleDecorator
(
IMP::example
)
MaxVectorKDMetric
(
IMP::algebra
)
RadiusOfGyrationRestraint
(
IMP::saxs
)
TALOSReader
(IMP.isd.TALOSReader)
CenteredMat
(
IMP::em2d
)
ExamplePairScore
(
IMP::example
)
MCCGSampler
(
IMP::core
)
RAII
(
IMP::base
)
TALOSRestraint
(
IMP::isd
)
Centroid
(
IMP::core
)
ExampleRefCounted
(
IMP::example
)
Memoizer
(
IMP::base
)
RangeViewAssignmentContainer
(
IMP::domino
)
TestCase
(IMP.test)
CentroidOfRefined
(
IMP::core
)
ExampleRestraint
(
IMP::example
)
Metric
(
IMP::statistics
)
ReadAssignmentContainer
(
IMP::domino
)
TextInput
(
IMP::base
)
Chain
(
IMP::atom
)
ExampleSingletonModifier
(
IMP::example
)
MinimumPairRestraint
(
IMP::container
)
ReadHDF5AssignmentContainer
(
IMP::domino
)
TextOutput
(
IMP::base
)
ChainPDBSelector
(
IMP::atom
)
ExampleSubsetFilterTable
(
IMP::example
)
MinimumPairScore
(
IMP::container
)
RecursiveAssignmentsTable
(
IMP::domino
)
TextWriter
(
IMP::display
)
Charged
(
IMP::atom
)
ExampleTemplateClassD
(
IMP::example
)
MinimumQuadRestraint
(
IMP::container
)
RecursivePartitionalClusteringEmbedding
(
IMP::statistics
)
TrackedObject
(
IMP::base
)
CHARMMAtom
(
IMP::atom
)
ExampleUnaryFunction
(
IMP::example
)
MinimumQuadScore
(
IMP::container
)
RecursivePartitionalClusteringMetric
(
IMP::statistics
)
Tracker
(
IMP::base
)
CHARMMAtomTopology
(
IMP::atom
)
Exception
(
IMP::base
)
MinimumRestraint
(
IMP::core
)
RecursiveStates
(
IMP::domino
)
Transform
(
IMP::core
)
CHARMMBondEndpoint
(
IMP::atom
)
ExcludedVolumeRestraint
(
IMP::core
)
MinimumRestraintScoreSubsetFilterTable
(
IMP::domino
)
RefCountChecker
(IMP.test)
Transformation2D
(
IMP::algebra
)
CHARMMBondParameters
(
IMP::atom
)
ExclusionSubsetFilterTable
(
IMP::domino
)
MinimumSingletonRestraint
(
IMP::container
)
RefCounted
(
IMP::base
)
Transformation3D
(
IMP::algebra
)
CHARMMConnection
(
IMP::atom
)
ExclusiveConsecutivePairContainer
(
IMP::container
)
MinimumSingletonScore
(
IMP::container
)
Reference
(
IMP::core
)
TransformationAndReflectionSymmetry
(
IMP::core
)
CHARMMDihedralParameters
(
IMP::atom
)
ExclusiveConsecutivePairFilter
(
IMP::container
)
MinimumTripletRestraint
(
IMP::container
)
ReferenceFrame3D
(
IMP::algebra
)
TransformationSymmetry
(
IMP::core
)
CHARMMIdealResidueTopology
(
IMP::atom
)
ExtendedGridIndexD
(
IMP::algebra
)
MinimumTripletScore
(
IMP::container
)
ReferenceFrameGeometry
(
IMP::display
)
TransformedDistancePairScore
(
IMP::core
)
CHARMMInternalCoordinate
(
IMP::atom
)
F
Model
(
IMP::kernel
)
RefinedPairsPairScore
(
IMP::core
)
Triangle3D
(
IMP::algebra
)
CHARMMParameters
(
IMP::atom
)
ModelException
(
IMP::base
)
Refiner
(
IMP::kernel
)
TriangleGeometry
(
IMP::display
)
CHARMMPatch
(
IMP::atom
)
FIFOBasedRemoteObject
(IMP.isd.FIFOBasedGrid)
ModellerRestraints
(
IMP.modeller
)
Reflection3D
(
IMP::algebra
)
TripletConstraint
(
IMP::core
)
CHARMMResidueTopology
(
IMP::atom
)
FileBasedRemoteObject
(IMP.isd.FileBasedGrid)
ModelLoader
(
IMP.modeller
)
RegistrationResult
(
IMP::em2d
)
TripletContainer
(
IMP::kernel
)
CHARMMResidueTopologyBase
(
IMP::atom
)
FilterGeometry
(
IMP::display
)
ModelObject
(
IMP::kernel
)
RemoteError
(
IMP.parallel
)
TripletContainerAdaptor
(
IMP::kernel
)
CHARMMSegmentTopology
(
IMP::atom
)
Fine2DRegistrationRestraint
(
IMP::em2d
)
ModifierVisitor
(
IMP::core
)
RemoveRigidMotionOptimizerState
(
IMP::atom
)
TripletContainerSet
(
IMP::container
)
CHARMMStereochemistryRestraint
(
IMP::atom
)
FitRestraint
(
IMP::em
)
Mol2Selector
(
IMP::atom
)
RemoveTranslationOptimizerState
(
IMP::atom
)
TripletContainerStatistics
(
IMP::container
)
CHARMMTopology
(
IMP::atom
)
FittingSolutionRecord
(
IMP::multifit
)
MolecularDynamics
(
IMP::atom
)
Representation
(
IMP.restrainer
)
TripletModifier
(
IMP::kernel
)
ChecksScoreState
(
IMP::core
)
FittingSolutions
(
IMP::em
)
MolecularDynamics
(
IMP::isd
)
RepulsiveDistancePairScore
(
IMP::isd
)
TripletPredicate
(
IMP::kernel
)
ChildrenRefiner
(
IMP::core
)
FittingStates
(
IMP::multifit
)
MolecularDynamicsMover
(
IMP::isd
)
Residue
(
IMP::atom
)
TripletRestraint
(
IMP::core
)
ChimeraWriter
(
IMP::display
)
FixedRefiner
(
IMP::core
)
Molecule
(
IMP::atom
)
ResidueRotamer
(
IMP::rotamer
)
TripletsConstraint
(
IMP::container
)
ChiSquaredScore
(
IMP::em2d
)
FixedXYZ
(
IMP::algebra
)
MonteCarlo
(
IMP::core
)
ResidueType
(
IMP::atom
)
TripletScore
(
IMP::kernel
)
CloseBipartitePairContainer
(
IMP::container
)
FixedZXZ
(
IMP::algebra
)
MonteCarloMover
(
IMP::core
)
Restraint
(
IMP::saxs
)
TripletsOptimizerState
(
IMP::container
)
ClosedCubicSpline
(
IMP::core
)
FixedZYZ
(
IMP::algebra
)
MonteCarloMoverResult
(
IMP::core
)
Restraint
(
IMP.restrainer
)
TripletsRestraint
(
IMP::container
)
ClosePairContainer
(
IMP::container
)
FloatIndex
(
IMP::kernel
)
MonteCarloRelativeMoves
(IMP.em2d.MonteCarloRelativeMoves)
Restraint
(
IMP::kernel
)
TruncatedHarmonic
(
IMP::core
)
ClosePairsFinder
(
IMP::core
)
FNormal
(
IMP::isd
)
MonteCarloWithBasinHopping
(
IMP::core
)
RestraintCache
(
IMP::domino
)
Typed
(
IMP::core
)
ClosePairsPairScore
(
IMP::core
)
ForceFieldParameters
(
IMP::atom
)
MonteCarloWithLocalOptimization
(
IMP::core
)
RestraintGeometry
(
IMP::display
)
TypedPairScore
(
IMP::core
)
ClusterRecord
(IMP.em2d.solutions_io)
ForceSwitch
(
IMP::atom
)
Mover
(
IMP::core
)
RestraintScoreSubsetFilterTable
(
IMP::domino
)
U
CMMWriter
(
IMP::display
)
FormFactorTable
(
IMP::saxs
)
MoverBase
(
IMP::core
)
RestraintSet
(
IMP::kernel
)
CoarseCC
(
IMP::em
)
Fragment
(
IMP::atom
)
MoveStatisticsScoreState
(
IMP::core
)
RestraintSetGeometry
(
IMP::display
)
UnaryFunction
(
IMP::kernel
)
CoarseCCatIntervals
(
IMP::em
)
G
MRCReaderWriter
(
IMP::em
)
RestraintsScoringFunction
(
IMP::core
)
UnaryFunctionEvaluate
(
IMP::score_functor
)
CoarseConvolution
(
IMP::em
)
MSConnectivityRestraint
(
IMP::core
)
RestraintStatistics
(
IMP::kernel
)
UnboundedGridRangeD
(
IMP::algebra
)
CoinFlipPairPredicate
(
IMP::core
)
GaussianProcessInterpolation
(
IMP::isd
)
MultipleBinormalRestraint
(
IMP::modeller
)
Result
(IMP.isd.AbstractGrid)
UncheckedWeakPointer
(
IMP::base
)
CoinFlipQuadPredicate
(
IMP::core
)
GaussianProcessInterpolationRestraint
(
IMP::isd
)
MultivariateFNormalSufficient
(
IMP::isd
)
ResultsDB
(IMP.em2d.solutions_io)
Undecorator
(
IMP::kernel
)
CoinFlipSingletonPredicate
(
IMP::core
)
GaussianRestraint
(
IMP::isd
)
MyMetric
(write_a_metric)
RigidBody
(
IMP::core
)
UnivariateFunction
(
IMP::isd
)
CoinFlipTripletPredicate
(
IMP::core
)
GeneralizedGuinierPorodFunction
(
IMP::isd
)
N
RigidBodyDerivativeGeometry
(
IMP::core
)
UnorderedTypePairPredicate
(
IMP::core
)
Color
(
IMP::display
)
GenericAttributeSingletonScore
(
IMP::core
)
RigidBodyDerivativesGeometry
(
IMP::core
)
UnorderedTypeQuadPredicate
(
IMP::core
)
Colored
(
IMP::display
)
GenericBoundingBox3DSingletonScore
(
IMP::core
)
NearestNeighborD
(
IMP::algebra
)
RigidBodyDiffusion
(
IMP::atom
)
UnorderedTypeSingletonPredicate
(
IMP::core
)
CommandDispatcher
(
IMP.kernel
)
GenericDistanceToSingletonScore
(
IMP::core
)
NearestNeighborsClosePairsFinder
(
IMP::core
)
RigidBodyDistancePairScore
(
IMP::core
)
UnorderedTypeTripletPredicate
(
IMP::core
)
CommonEndpointPairFilter
(
IMP::misc
)
GenericScopedRemoveRestraint
(
IMP::kernel
)
NestedRigidBodyStates
(
IMP::domino
)
RigidBodyFrameGeometry
(
IMP::core
)
UsageException
(
IMP::base
)
ComplementarityRestraint
(
IMP::multifit
)
GenericScopedRemoveScoreState
(
IMP::kernel
)
NetworkError
(
IMP.parallel
)
RigidBodyFramesGeometry
(
IMP::core
)
V
ComponentHeader
(
IMP::multifit
)
GenericScopedRestraint
(
IMP::kernel
)
NOERestraint
(
IMP::isd
)
RigidBodyHierarchyGeometry
(
IMP::core
)
CompoundStates
(
IMP::domino
)
GenericScopedScoreState
(
IMP::kernel
)
NoMoreSlavesError
(
IMP.parallel
)
RigidBodyMover
(
IMP::core
)
Value
(
IMP::base
)
Cone3D
(
IMP::algebra
)
GeometricPrimitiveD
(
IMP::algebra
)
NonAlternativePDBSelector
(
IMP::atom
)
RigidBodyStates
(
IMP::domino
)
ValueException
(
IMP::base
)
Configuration
(
IMP::kernel
)
Geometry
(
IMP::display
)
NonCopyable
(
IMP::base
)
RigidBodyTorque
(
IMP::core
)
Vector
(
IMP::base
)
ConfigurationSet
(
IMP::kernel
)
GeometryProcessor
(
IMP::display
)
NonHydrogenMol2Selector
(
IMP::atom
)
RigidClosePairsFinder
(
IMP::core
)
VectorD
(
IMP::algebra
)
ConfigurationSetRMSDMetric
(
IMP::statistics
)
GeometrySet
(
IMP::display
)
NonRigidMember
(
IMP::core
)
RigidMember
(
IMP::core
)
VectorDEmbedding
(
IMP::statistics
)
ConfigurationSetXYZEmbedding
(
IMP::statistics
)
GridClosePairsFinder
(
IMP::core
)
NonWaterNonHydrogenPDBSelector
(
IMP::atom
)
RMSDCalculator
(
IMP::atom
)
VectorInputD
(
IMP::algebra
)
ConjugateGradients
(
IMP::core
)
GridD
(
IMP::algebra
)
NonWaterPDBSelector
(
IMP::atom
)
RMSDClustering
(
IMP::multifit
)
VectorInputD< 1 >
(
IMP::algebra
)
ConjugateGradients
(
IMP::gsl
)
GridIndexD
(
IMP::algebra
)
NormalizedSphereDistancePairScore
(
IMP::core
)
RotamerAngleTuple
(
IMP::rotamer
)
VectorKDMetric
(
IMP::algebra
)
ConnectingPairContainer
(
IMP::container
)
GridStates
(
IMP::em2d
)
NormalMover
(
IMP::core
)
RotamerCalculator
(
IMP::rotamer
)
VelocityScalingOptimizerState
(
IMP::atom
)
ConnectivityRestraint
(
IMP::core
)
GSLOptimizer
(
IMP::gsl
)
NotPDBSelector
(
IMP::atom
)
RotamerLibrary
(
IMP::rotamer
)
VersionInfo
(
IMP::base
)
ConsecutivePairContainer
(
IMP::container
)
H
NPDBSelector
(
IMP::atom
)
Rotation2D
(
IMP::algebra
)
VolumeRestraint
(
IMP::core
)
ConsecutivePairFilter
(
IMP::container
)
Nuisance
(
IMP::isd
)
Rotation3D
(
IMP::algebra
)
vonMises
(
IMP::isd
)
ConstantPairPredicate
(
IMP::core
)
Harmonic
(
IMP::score_functor
)
O
RunInTempDir
(IMP.test)
vonMisesKappaConjugateRestraint
(
IMP::isd
)
ConstantQuadPredicate
(
IMP::core
)
Harmonic
(
IMP::core
)
S
vonMisesKappaJeffreysRestraint
(
IMP::isd
)
ConstantRestraint
(
IMP::core
)
HarmonicDistancePairScore
(
IMP::core
)
Object
(
IMP::base
)
vonMisesSufficient
(
IMP::isd
)
ConstantSingletonPredicate
(
IMP::core
)
HarmonicLowerBound
(
IMP::score_functor
)
OpenCubicSpline
(
IMP::core
)
SameResiduePairFilter
(
IMP::atom
)
Voxel
(
IMP::em
)
ConstantTripletPredicate
(
IMP::core
)
HarmonicLowerBound
(
IMP::core
)
OpenCubicSpline
(
IMP::score_functor
)
SampleAssignmentContainer
(
IMP::domino
)
W
Constraint
(
IMP::kernel
)
HarmonicSphereDistancePairScore
(
IMP::core
)
Optimizer
(
IMP::kernel
)
SampledDensityMap
(
IMP::em
)
ConstVector
(
IMP::base
)
HarmonicUpperBound
(
IMP::score_functor
)
OptimizerState
(
IMP::kernel
)
Sampler
(
IMP::kernel
)
WarningContext
(
IMP::base
)
Container
(
IMP::kernel
)
HarmonicUpperBound
(
IMP::core
)
OptionParser
(
IMP.kernel
)
SaveLink
(
IMP::rmf
)
WaterPDBSelector
(
IMP::atom
)
Context
(
IMP.parallel
)
HarmonicUpperBoundSphereDiameterPairScore
(
IMP::core
)
Order
(
IMP::domino
)
SaveOptimizerState
(
IMP::rmf
)
WeakPointer
(
IMP::base
)
Copy
(
IMP::atom
)
HarmonicUpperBoundSphereDistancePairScore
(
IMP::core
)
OrderedTypePairPredicate
(
IMP::core
)
Scale
(
IMP::isd
)
WeightedExcludedVolumeRestraint
(
IMP::multifit
)
Cosine
(
IMP::core
)
HarmonicWell
(
IMP::core
)
OrderedTypeQuadPredicate
(
IMP::core
)
ScopedAddCacheAttribute
(
IMP::kernel
)
WeightedSphereDistancePairScore
(
IMP::core
)
CoulombPairScore
(
IMP::atom
)
HasHigherCCC
(
IMP::em2d
)
OrderedTypeSingletonPredicate
(
IMP::core
)
ScopedSetAttribute
(
IMP::kernel
)
WeightScore
(
IMP::score_functor
)
Covariance1DFunction
(
IMP::isd
)
HasLowerScore
(
IMP::em2d
)
OrderedTypeTripletPredicate
(
IMP::core
)
Score
(
IMP::score_functor
)
WormLikeChain
(
IMP::misc
)
Cover
(
IMP::core
)
HeapAssignmentContainer
(
IMP::domino
)
OrPDBSelector
(
IMP::atom
)
ScoreAccumulator
(
IMP::kernel
)
WriteAssignmentContainer
(
IMP::domino
)
CoverBond
(
IMP::atom
)
HeapRecord
(IMP.em2d.solutions_io)
OwnerPointer
(
IMP::base
)
ScoreFunction
(
IMP::em2d
)
WriteHDF5AssignmentContainer
(
IMP::domino
)
CoverRefined
(
IMP::core
)
HierarchiesGeometry
(
IMP::atom
)
P
ScoreState
(
IMP::kernel
)
WriteOptimizerState
(
IMP::display
)
CPDBSelector
(
IMP::atom
)
Hierarchy
(
IMP::atom
)
ScoreUnaryFunction
(
IMP::score_functor
)
WritePDBOptimizerState
(
IMP::atom
)
CreateLogContext
(
IMP::base
)
Hierarchy
(
IMP::core
)
PackedAssignmentContainer
(
IMP::domino
)
ScoringFunction
(
IMP::kernel
)
Writer
(
IMP::display
)
CustomXYZR
(
IMP::misc
)
HierarchyCounter
(
IMP::core
)
PairConstraint
(
IMP::core
)
ScoringFunctionAdaptor
(
IMP::kernel
)
WriterAdaptor
(
IMP::display
)
CvEstimator
(IMP.isd.TuneRex)
HierarchyGeometry
(
IMP::atom
)
PairContainer
(
IMP::kernel
)
SecondaryStructureResidue
(
IMP::atom
)
WriteRestraintScoresOptimizerState
(
IMP::core
)
Cylinder3D
(
IMP::algebra
)
HierarchyTraits
(
IMP::core
)
PairContainerAdaptor
(
IMP::kernel
)
Segment3D
(
IMP::algebra
)
X
CylinderGeometry
(
IMP::display
)
HierarchyVisitor
(
IMP::core
)
PairContainerSet
(
IMP::container
)
SegmentationParameters
(
IMP::em2d
)
D
HighDensityEmbedding
(
IMP::em
)
PairContainerStatistics
(
IMP::container
)
SegmentGeometry
(
IMP::display
)
Xlink
(IMP.em2d.buildxlinks)
Histogram
(
IMP::statistics
)
PairGeometry
(
IMP::display
)
Selection
(
IMP::atom
)
XlinksDict
(IMP.em2d.buildxlinks)
Database2
(IMP.em2d.Database)
HistogramD
(
IMP::statistics
)
PairListSubsetFilterTable
(
IMP::domino
)
SelectionGeometry
(
IMP::atom
)
XMLDisplay
(
IMP.restrainer
)
DataObject
(
IMP::core
)
History
(IMP.isd.History)
PairModifier
(
IMP::kernel
)
SerialMover
(
IMP::core
)
XMLRepresentation
(
IMP.restrainer
)
DataPointsAssignment
(
IMP::multifit
)
HybridMonteCarlo
(
IMP::isd
)
PairPredicate
(
IMP::kernel
)
Server
(IMP.isd.AbstractGrid)
XMLRestraint
(
IMP.restrainer
)
DecayPairContainerOptimizerState
(
IMP::misc
)
HydrogenPDBSelector
(
IMP::atom
)
PairRestraint
(
IMP::core
)
set
(
IMP::base
)
XYZ
(
IMP::core
)
Decorator
(
IMP::kernel
)
I
PairsConstraint
(
IMP::container
)
SetCheckState
(
IMP::base
)
XYZDerivativeGeometry
(
IMP::core
)
DefaultEmbeddingD
(
IMP::algebra
)
PairScore
(
IMP::kernel
)
SetLogState
(
IMP::base
)
XYZDerivativesGeometry
(
IMP::core
)
DeltaDistributionFunction
(
IMP::saxs
)
Image
(
IMP::em2d
)
PairsGeometry
(
IMP::display
)
SetLogTarget
(
IMP::base
)
XYZR
(
IMP::core
)
DenseGrid3D
(
IMP::algebra
)
ImageHeader
(
IMP::em
)
PairsOptimizerState
(
IMP::container
)
SetNumberOfThreads
(
IMP::base
)
XYZRGeometry
(
IMP::core
)
DenseGridStorageD
(
IMP::algebra
)
IMPRestraints
(
IMP.modeller
)
PairsRestraint
(
IMP::container
)
SettingsData
(
IMP::multifit
)
XYZRsGeometry
(
IMP::core
)
DensityDataPoints
(
IMP::multifit
)
ImproperSingletonScore
(
IMP::atom
)
ParabolicFit2D
(
IMP::algebra
)
sfo_common
(IMP.isd.shared_functions)
XYZStates
(
IMP::domino
)
DensityFillingRestraint
(
IMP::em
)
InBoundingBox3DSingletonPredicate
(
IMP::core
)
Particle
(
IMP::kernel
)
SGEPESlaveArray
(
IMP.parallel
)
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
J
|
K
|
L
|
M
|
N
|
O
|
P
|
Q
|
R
|
S
|
T
|
U
|
V
|
W
|
X