A decorator for a residue with probability of secondary structure. More...

Inheritance diagram for IMP::atom::SecondaryStructureResidue:

Public Member Functions
	SecondaryStructureResidue (Model *m, ParticleIndex id)

	SecondaryStructureResidue (::IMP::kernel::Particle *p)

Floats	get_all_probabilities ()
	Return all probabilities in one vector.

Particle *	get_particle () const

Float	get_prob_coil () const

Float	get_prob_helix () const

Float	get_prob_strand () const

void	set_prob_coil (Float t)

void	set_prob_helix (Float t)

void	set_prob_strand (Float t)

void	show (std::ostream &out=std::cout) const

Public Member Functions inherited from IMP::kernel::Decorator
ParticleIndex	get_particle_index () const

Particle *	get_particle () const

Model *	get_model () const
	Returns the Model containing the particle.

	Decorator (Particle *p)

	Decorator ()

Static Public Member Functions
static SecondaryStructureResidue	decorate_particle (::IMP::kernel::Particle *p)

static FloatKey	get_prob_coil_key ()

static FloatKey	get_prob_helix_key ()

static FloatKey	get_prob_strand_key ()

static bool	particle_is_instance (Particle *p)
	Return true if the particle is a secondary structure residue.

static SecondaryStructureResidue	setup_particle (Particle *res_p, Float prob_helix, Float prob_strand, Float prob_coil)
	Set up SecondaryStructureResidue when you know all three probabilities.

static SecondaryStructureResidue	setup_particle (Particle *res_p)
	Set up SecondaryStructureResidue with default probabilities.

Static Public Member Functions inherited from IMP::kernel::Decorator
static bool	particle_is_instance (Particle *p)
	Return true if the particle can be cast to the decorator. More...

Additional Inherited Members
Protected Member Functions inherited from IMP::kernel::Decorator
	Decorator (Model *m, ParticleIndex pi)

	Decorator (Particle *p)

Detailed Description

Contains probabilities for each sse type (helix, strand, coil)

The documentation for this class was generated from the following file:

Public Member Functions