IMP
2.0.0
The Integrative Modeling Platform
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Stores a set of PairContainers. More...
#include <IMP/container/PairContainerSet.h>
Public Member Functions | |
PairContainerSet (Model *m, std::string name="PairContainerSet %1%") | |
Construct and empty set. | |
PairContainerSet (const PairContainersTemp &pc, std::string name="PairContainerSet %1%") | |
template<class M > | |
void | apply_generic (const M *m) const |
apply modifer sm to all pair containers | |
virtual void | do_show (std::ostream &out) const |
ParticleIndexes | get_all_possible_indexes () const |
Get contained particles. More... | |
Public Member Functions inherited from IMP::kernel::PairContainer | |
void | apply (const PairModifier *sm) const |
Apply a SingletonModifier to the contents. | |
void | apply_generic (const PairModifier *m) const |
Just use apply() in the base class. | |
bool | get_contains_particle_pair (ParticlePair v) const |
This function is very slow and you should think hard about using it. More... | |
virtual ParticleIndexPairs | get_indexes () const =0 |
unsigned int | get_number_of_particle_pairs () const |
ParticlePair | get_particle_pair (unsigned int i) const |
ParticlePairsTemp | get_particle_pairs () const |
virtual ParticleIndexPairs | get_range_indexes () const =0 |
Public Member Functions inherited from IMP::kernel::Container | |
virtual void | do_after_evaluate (DerivativeAccumulator *accpt) |
Reset changed status. | |
ModelObjectsTemp | do_get_outputs () const |
containers don't have outputs | |
ParticlesTemp | get_all_possible_particles () const |
bool | get_is_changed () const |
virtual bool | get_is_decomposable () const |
Public Member Functions inherited from IMP::kernel::ScoreState | |
ScoreState (Model *m, std::string name="ScoreState %1%") | |
void | after_evaluate (DerivativeAccumulator *accpt) |
Do post evaluation work if needed. | |
void | before_evaluate () |
Force update of the structure. | |
ContainersTemp | get_input_containers () const |
ParticlesTemp | get_input_particles () const |
ContainersTemp | get_output_containers () const |
ParticlesTemp | get_output_particles () const |
Public Member Functions inherited from IMP::kernel::ModelObject | |
ModelObject (Model *m, std::string name) | |
ModelObjectsTemp | get_inputs () const |
ModelObjectsTemps | get_interactions () const |
Model * | get_model () const |
ModelObjectsTemp | get_outputs () const |
Public Member Functions inherited from IMP::base::Object | |
virtual void | clear_caches () |
virtual IMP::base::VersionInfo | get_version_info () const =0 |
Get information about the module and version of the object. | |
void | set_check_level (CheckLevel l) |
void | set_log_level (LogLevel l) |
Set the logging level used in this object. More... | |
void | set_was_used (bool tf) const |
void | show (std::ostream &out=std::cout) const |
const std::string & | get_name () const |
void | set_name (std::string name) |
Methods to control the nested container | |
This container merges a set of nested containers. To add or remove nested containers, use the methods below. | |
void | remove_pair_container (PairContainer *d) |
void | remove_pair_containers (const PairContainers &d) |
void | set_pair_containers (const PairContainers &ps) |
void | set_pair_containers_order (const PairContainers &objs) |
unsigned int | add_pair_container (PairContainer *obj) |
void | add_pair_containers (const PairContainers &objs) |
void | clear_pair_containers () |
unsigned int | get_number_of_pair_containers () const |
bool | get_has_pair_containers () |
PairContainer * | get_pair_container (unsigned int i) const |
PairContainers | get_pair_containers () const |
void | reserve_pair_containers (unsigned int sz) |
Additional Inherited Members | |
Public Types inherited from IMP::kernel::PairContainer | |
typedef ParticleIndexPair | ContainedIndexType |
typedef ParticleIndexPairs | ContainedIndexTypes |
typedef ParticlePair | ContainedType |
typedef ParticlePairsTemp | ContainedTypes |
Protected Member Functions inherited from IMP::kernel::PairContainer | |
PairContainer (Model *m, std::string name="PairContainer %1%") | |
virtual void | do_apply (const PairModifier *sm) const =0 |
virtual bool | do_get_provides_access () const |
Related Functions inherited from IMP::kernel::PairContainer | |
typedef IMP::base::Vector < IMP::base::WeakPointer < PairContainer > > | PairContainersTemp |
The input sets must be disjoint. This can change if there is demand for it.
Definition at line 28 of file PairContainerSet.h.
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virtual |
Get a list of all particles contained in this one, given that the input containers are up to date.
Implements IMP::kernel::Container.