IMP
2.0.0
The Integrative Modeling Platform
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A decorator for wrapping a particle representing a molecular bond. More...
#include <IMP/atom/bond_decorators.h>
Public Types | |
enum | Type { UNKNOWN =-1, NONBIOLOGICAL, SINGLE =1, DOUBLE =2, TRIPLE =3, HYDROGEN, SALT, PEPTIDE, AMIDE, AROMATIC } |
The types a bond can have right now. | |
Public Member Functions | |
Bond (Model *m, ParticleIndex id) | |
Bond (::IMP::kernel::Particle *p) | |
Bonded | get_bonded (unsigned int i) const |
Get the atom i of the bond. More... | |
Float | get_length () const |
Int | get_order () const |
Float | get_stiffness () const |
Int | get_type () const |
void | set_length (Float t) |
void | set_order (Int t) |
void | set_stiffness (Float t) |
void | set_type (Int t) |
void | show (std::ostream &out=std::cout) const |
Public Member Functions inherited from IMP::kernel::Decorator | |
ParticleIndex | get_particle_index () const |
Particle * | get_particle () const |
Model * | get_model () const |
Returns the Model containing the particle. | |
Decorator (Particle *p) | |
Decorator () | |
Static Public Member Functions | |
static Bond | decorate_particle (::IMP::kernel::Particle *p) |
static FloatKey | get_length_key () |
static bool | particle_is_instance (Particle *p) |
Return true if the particle is a bond. | |
Static Public Member Functions inherited from IMP::kernel::Decorator | |
static bool | particle_is_instance (Particle *p) |
Return true if the particle can be cast to the decorator. More... | |
Related Functions | |
(Note that these are not member functions.) | |
Bonds | get_internal_bonds (Hierarchy mhd) |
Get the bonds internal to this tree. More... | |
Additional Inherited Members | |
Protected Member Functions inherited from IMP::kernel::Decorator | |
Decorator (Model *m, ParticleIndex pi) | |
Decorator (Particle *p) | |
As with Atom, the types of bonds will eventually be run-time expandible.
Definition at line 40 of file bond_decorators.h.
Bonded IMP::atom::Bond::get_bonded | ( | unsigned int | i | ) | const |
[in] | i | 0 or 1 |
Definition at line 208 of file bond_decorators.h.