IMP  2.0.0
The Integrative Modeling Platform
IMP::core::KClosePairsPairScore Class Reference

#include <IMP/core/ClosePairsPairScore.h>

+ Inheritance diagram for IMP::core::KClosePairsPairScore:

Public Member Functions

 KClosePairsPairScore (PairScore *f, Refiner *r, int k=1)
 
Restraints create_current_decomposition (Model *m, const ParticleIndexPair &vt) const
 
virtual void do_show (std::ostream &out) const
 
ParticlePairsTemp get_close_pairs (const ParticlePair &pp) const
 
- Public Member Functions inherited from IMP::kernel::PairScore
 PairScore (std::string name="PairScore %1%")
 
Restraints create_current_decomposition (Model *m, const ParticleIndexPair &vt) const
 
virtual double evaluate (const ParticlePair &vt, DerivativeAccumulator *da) const
 Compute the score and the derivative if needed.
 
virtual double evaluate_if_good_index (Model *m, const ParticleIndexPair &vt, DerivativeAccumulator *da, double max) const
 Compute the score and the derivative if needed.
 
virtual double evaluate_if_good_indexes (Model *m, const ParticleIndexPairs &o, DerivativeAccumulator *da, double max, unsigned int lower_bound, unsigned int upper_bound) const
 
virtual double evaluate_index (Model *m, const ParticleIndexPair &vt, DerivativeAccumulator *da) const
 Compute the score and the derivative if needed.
 
virtual double evaluate_indexes (Model *m, const ParticleIndexPairs &o, DerivativeAccumulator *da, unsigned int lower_bound, unsigned int upper_bound) const
 
ContainersTemp get_input_containers (Particle *p) const
 
ParticlesTemp get_input_particles (Particle *p) const
 
ModelObjectsTemp get_inputs (Model *m, const ParticleIndexes &pis) const
 
- Public Member Functions inherited from IMP::base::Object
virtual void clear_caches ()
 
virtual IMP::base::VersionInfo get_version_info () const =0
 Get information about the module and version of the object.
 
void set_check_level (CheckLevel l)
 
void set_log_level (LogLevel l)
 Set the logging level used in this object. More...
 
void set_was_used (bool tf) const
 
void show (std::ostream &out=std::cout) const
 
const std::string & get_name () const
 
void set_name (std::string name)
 

Additional Inherited Members

- Public Types inherited from IMP::kernel::PairScore
typedef ParticlePair Argument
 
typedef ParticleIndexPair IndexArgument
 
typedef PairModifier Modifier
 
typedef const ParticlePairPassArgument
 
typedef const ParticleIndexPairPassIndexArgument
 
- Protected Member Functions inherited from IMP::kernel::PairScore
virtual Restraints do_create_current_decomposition (Model *m, const ParticleIndexPair &vt) const
 
virtual ModelObjectsTemp do_get_inputs (Model *m, const ParticleIndexes &pis) const =0
 

Detailed Description

Apply a score to a fixed number of close pairs from the two sets.

Apply the score to either the k closest pairs (sphere distance). The envisioned use case is that the two particles each represent a protein and the refiners return the geometry for that protein.

See Also
ClosePairsScoreState

Definition at line 29 of file ClosePairsPairScore.h.

Constructor & Destructor Documentation

IMP::core::KClosePairsPairScore::KClosePairsPairScore ( PairScore f,
Refiner r,
int  k = 1 
)

only score the k closest pairs.


The documentation for this class was generated from the following file: