IMP  2.0.0
The Integrative Modeling Platform
IMP::display::ChimeraWriter Class Reference

Write geometry to a python file for Chimera to read. More...

#include <IMP/display/ChimeraWriter.h>

+ Inheritance diagram for IMP::display::ChimeraWriter:

Public Member Functions

 ChimeraWriter (base::TextOutput of)
 
 ChimeraWriter (const char *name)
 
 ChimeraWriter (std::string name)
 
- Public Member Functions inherited from IMP::display::TextWriter
 TextWriter (base::TextOutput fn)
 Create a writer opening the file with the passed sink. More...
 
 TextWriter (std::string name)
 Create a write for a file or files with the passed name or pattern. More...
 
virtual ~TextWriter ()
 Write the data and close the file.
 
std::string get_current_file_name () const
 get the name of the current file being writter
 
- Public Member Functions inherited from IMP::display::Writer
 Writer (std::string name)
 Create a writer opening the file with the passed name.
 
virtual ~Writer ()
 Write the data and close the file.
 
void set_frame (unsigned int i)
 
int get_frame () const
 
void add_geometry (Geometry *g)
 
void add_geometry (const Geometries &g)
 
- Public Member Functions inherited from IMP::base::Object
virtual void clear_caches ()
 
virtual IMP::base::VersionInfo get_version_info () const =0
 Get information about the module and version of the object.
 
void set_check_level (CheckLevel l)
 
void set_log_level (LogLevel l)
 Set the logging level used in this object. More...
 
void set_was_used (bool tf) const
 
void show (std::ostream &out=std::cout) const
 
const std::string & get_name () const
 
void set_name (std::string name)
 

Protected Member Functions

void add_python_code (std::string code)
 Add some arbitrary python code to the chimera file. More...
 
- Protected Member Functions inherited from IMP::display::TextWriter
void do_set_frame ()
 in case you want to take action on a new frame
 
std::ostream & get_stream ()
 Get the stream for inhereting classes to write to.
 
void open ()
 
- Protected Member Functions inherited from IMP::display::Writer
virtual void do_close ()=0
 A hook for implementation classes to use to take actions on file close.
 
virtual void do_open ()=0
 A hook for implementation classes to use to take actions on file open.
 
- Protected Member Functions inherited from IMP::display::GeometryProcessor
virtual bool handle_anything (Geometry *, Color, std::string)
 
virtual bool handle_bounding_box (BoundingBoxGeometry *, Color, std::string)
 
void handle_geometry (Geometry *g)
 
virtual bool handle_label (LabelGeometry *, Color, std::string)
 
virtual bool handle_surface_mesh (SurfaceMeshGeometry *, Color, std::string)
 
- Protected Member Functions inherited from IMP::base::Object
 Object (std::string name)
 Construct an object with the given name. More...
 

Additional Inherited Members

Detailed Description

The writer writes a python file which can handle markers, edges and surfaces. Since these are native chimera objects, they are handled a bit better than vrml ones.

This format creates one file per frame. So if you want to use frames and save them all, make sure there is a "%1%" in the file name string passed to the constructor.

Deprecated:
Use IMP::rmf instead when interfacing with Chimera.

Definition at line 28 of file ChimeraWriter.h.

Member Function Documentation

void IMP::display::ChimeraWriter::add_python_code ( std::string  code)
protected

You should import the bits of Chimera that you need. At the moment, you should not name a variable surf_sets or marker_sets.


The documentation for this class was generated from the following file: