IMP
2.0.0
The Integrative Modeling Platform
|
A decorator for a particle which has bonds. More...
#include <IMP/atom/bond_decorators.h>
Public Member Functions | |
Bonded (Model *m, ParticleIndex id) | |
Bonded (::IMP::kernel::Particle *p) | |
Bond | get_bond (unsigned int i) const |
Get a Bond of the ith bond. More... | |
Bonded | get_bonded (unsigned int i) const |
Get a Bonded of the ith bonded particle. More... | |
ParticleIndexes | get_bonds () const |
moving towards particle indexes | |
unsigned int | get_number_of_bonds () const |
void | show (std::ostream &out=std::cout) const |
Public Member Functions inherited from IMP::kernel::Decorator | |
ParticleIndex | get_particle_index () const |
Particle * | get_particle () const |
Model * | get_model () const |
Returns the Model containing the particle. | |
Decorator (Particle *p) | |
Decorator () | |
Static Public Member Functions | |
static Bonded | decorate_particle (::IMP::kernel::Particle *p) |
static bool | particle_is_instance (Particle *p) |
return true if it is a bonded particle | |
static Bonded | setup_particle (Particle *p) |
Static Public Member Functions inherited from IMP::kernel::Decorator | |
static bool | particle_is_instance (Particle *p) |
Return true if the particle can be cast to the decorator. More... | |
Related Functions | |
(Note that these are not member functions.) | |
Bond | create_bond (Bonded a, Bonded b, Int t) |
Connect the two wrapped particles by a bond. More... | |
Bond | create_bond (Bonded a, Bonded b, Bond o) |
Connect the two wrapped particles by a custom bond. More... | |
Bond | create_custom_bond (Bonded a, Bonded b, Float length, Float stiffness=-1) |
Connect the two wrapped particles by a custom bond. More... | |
void | destroy_bond (Bond b) |
Destroy the bond connecting to particles. More... | |
Bond | get_bond (Bonded a, Bonded b) |
Get the bond between two particles. More... | |
Iterate through the bonds | |
BondIterator | bonds_begin () const |
BondIterator | bonds_end () const |
Iterate through the bondeds | |
BondedIterator | bondeds_begin () const |
BondedIterator | bondeds_end () const |
Additional Inherited Members | |
Protected Member Functions inherited from IMP::kernel::Decorator | |
Decorator (Model *m, ParticleIndex pi) | |
Decorator (Particle *p) | |
Definition at line 92 of file bond_decorators.h.
Bond IMP::atom::Bonded::get_bond | ( | unsigned int | i | ) | const |
Definition at line 144 of file bond_decorators.h.
Bonded IMP::atom::Bonded::get_bonded | ( | unsigned int | i | ) | const |
Definition at line 160 of file bond_decorators.h.