A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X

A

Demuxer (IMP.isd.demux_trajs)

InBoundingBox3DSingletonPredicate (IMP::core)

PDBLocation (IMP.pmi.metadata)

Simplex (IMP::gsl)

AddScores (IMP::score_functor)

DenseFloatLogGridKD (IMP::algebra)

InContainerPairFilter (IMP::container)

PDBSelector (IMP::atom)

Simulator (IMP::atom)

AddStringFlag (IMP)

DenseGrid3D (IMP::algebra)

InContainerQuadFilter (IMP::container)

PDBSequences (IMP.pmi.topology)

SingleLinkage (IMP::em2d)

AdvancedFlag (IMP)

DenseGridStorageD (IMP::algebra)

InContainerSingletonFilter (IMP::container)

PermutationStates (IMP::domino)

SingletonConstraint (IMP::core)

Alignment (IMP.pmi.analysis)

DenseIntLogGrid3D (IMP::algebra)

InContainerTripletFilter (IMP::container)

Pipe (IMP.isd.utils)

SingletonContainer (IMP)

AlignmentClustering (IMP.multifit.cluster)

DensityDataPoints (IMP::multifit)

IncrementalScoringFunction (IMP::core)

PivyWriter (IMP::display)

SingletonContainerAdaptor (IMP)

AlignSymmetric (IMP::cnmultifit)

DensityFillingRestraint (IMP::em)

Index (IMP)

Plane3D (IMP::algebra)

SingletonContainerSet (IMP::container)

AllBipartitePairContainer (IMP::container)

DensityHeader (IMP::em)

IndexException (IMP)

PlaneDihedralRestraint (IMP.pmi.restraints.stereochemistry)

SingletonContainerStatistics (IMP::container)

AllMol2Selector (IMP::atom)

DensityMap (IMP::em)

IndexStates (IMP::domino)

PlaneGeometry (IMP::display)

SingletonGeometry (IMP::display)

AllPairContainer (IMP::container)

DependencyScoreState (IMP::domino)

IndexVector (IMP)

Pointer (IMP)

SingletonModifier (IMP)

AllPDBSelector (IMP::atom)

DerivativeAccumulator (IMP)

InitialDockingFromXlinks (IMP.EMageFit.buildxlinks)

PointerMember (IMP)

SingletonPredicate (IMP)

AllSamePairPredicate (IMP::core)

DerivativeCalculator (IMP::saxs)

InputAdaptor (IMP)

PointGeometry (IMP::display)

SingletonRestraint (IMP::core)

AllSameQuadPredicate (IMP::core)

DerivativesFromRefined (IMP::core)

InternalException (IMP)

PointToSphereDistance (IMP::score_functor)

SingletonsConstraint (IMP::container)

AllSameSingletonPredicate (IMP::core)

DerivativesToRefined (IMP::core)

IntsOrder (IMP::em2d)

PolarResamplingParameters (IMP::em2d)

SingletonScore (IMP)

AllSameTripletPredicate (IMP::core)

DiameterRestraint (IMP::core)

IOException (IMP)

PolygonGeometry (IMP::display)

SingletonsGeometry (IMP::display)

AmbiguousCompositeRestraint (IMP.pmi.restraints.proteomics)

Diffusion (IMP::atom)

IsCollisionPairPredicate (IMP::core)

PPDBSelector (IMP::atom)

SingletonsOptimizerState (IMP::container)

AmbiguousNOERestraint (IMP::isd)

Dihedral (IMP::atom)

ISDRestraint (IMP::isd)

Precision (IMP.pmi.analysis)

SingletonsRestraint (IMP::container)

AmbiguousRestraint (IMP::isd)

DihedralAngleRevoluteJoint (IMP::kinematics)

IsosurfaceGeometry (IMP::display)

PredicatePairsRestraint (IMP::container)

SingletonStatistical (IMP::score_functor)

Analysis (IMP.isd.Analysis)

DihedralRestraint (IMP::core)

J

PredicateQuadsRestraint (IMP::container)

SkinSurfaceGeometry (IMP::display)

AnalysisReplicaExchange0 (IMP.pmi.macros)

DihedralSingletonScore (IMP::atom)

PredicateSingletonScore (IMP::core)

Slave (IMP.parallel)

AnchorsData (IMP::multifit)

DirectionalDOF (IMP::kinematics)

JeffreysPrior (IMP.pmi.restraints.parameters)

PredicateSingletonsRestraint (IMP::container)

SlaveArray (IMP.parallel)

AndPDBSelector (IMP::atom)

DirectorObjectChecker (IMP.test)

JeffreysRestraint (IMP::isd)

PredicateTripletsRestraint (IMP::container)

Slice (IMP::domino)

Angle (IMP::atom)

DiscreteSampler (IMP::domino)

Joint (IMP::kinematics)

PrincipalComponentAnalysisD (IMP::algebra)

SmoothingFunction (IMP::atom)

AngleRestraint (IMP::core)

DisjointSetsSubsetFilterTable (IMP::domino)

JPGImageReaderWriter (IMP::em2d)

PrismaticJoint (IMP::kinematics)

Soap (IMP::score_functor)

AngleSingletonScore (IMP::atom)

DistanceFilter (IMP::em2d)

K

ProbabilisticAnchorGraph (IMP::multifit)

SoapPairFilter (IMP::atom)

AngleTripletScore (IMP::core)

DistanceFilterTable (IMP::em2d)

ProbabilisticSubsetFilterTable (IMP::domino)

SoftCylinderPairScore (IMP::misc)

AngularVelocity (IMP::atom)

DistanceMask (IMP::em)

KClosePairsPairScore (IMP::core)

ProcessOutput (IMP.pmi.output)

SoftSpherePairScore (IMP::core)

ApplicationTestCase (IMP.test)

DistancePairScore (IMP::core)

KernelParameters (IMP::em)

Profile (IMP::saxs)

SoftSubSurfacePairScore (IMP::core)

Array (IMP)

DistancePairScore (IMP::score_functor)

Key (IMP)

ProfileClustering (IMP::saxs)

SoftSuperSurfacePairScore (IMP::core)

AssemblyHeader (IMP::multifit)

DistanceRestraint (IMP.pmi.restraints.basic)

KinematicForest (IMP::kinematics)

ProfileFitter (IMP::saxs)

Software (IMP.pmi.metadata)

Assignment (IMP::domino)

DistanceRestraint (IMP::core)

KinematicForestScoreState (IMP::kinematics)

Profiler (IMP::benchmark)

SolventAccessibleSurface (IMP::saxs)

AssignmentContainer (IMP::domino)

DistanceToPointRestraint (IMP.pmi.restraints.basic)

KinematicNode (IMP::kinematics)

ProjectingOptions (IMP::em2d)

SparseGrid3D (IMP::algebra)

AssignmentsTable (IMP::domino)

DistributePairsScoreState (IMP::container)

KMeans (IMP::kmeans)

ProjectingParameters (IMP::em2d)

SparseGridStorageD (IMP::algebra)

Atom (IMP::atom)

DistributeQuadsScoreState (IMP::container)

L

ProjectionFinder (IMP::em2d)

SparseSymmetricPairMemoizer (IMP)

AtomicCrossLinkMSRestraint (IMP.pmi.restraints.crosslinking)

DistributeSingletonsScoreState (IMP::container)

ProjectionMask (IMP::em2d)

SparseUnboundedGrid3D (IMP::algebra)

AtomicCrossLinkMSRestraint (IMP::isd)

DistributeTripletsScoreState (IMP::container)

LabelGeometry (IMP::display)

ProjectionParameters (IMP::em2d)

SparseUnboundedGridD (IMP::algebra)

ATOMPDBSelector (IMP::atom)

Distribution (IMP::saxs)

LangevinThermostatOptimizerState (IMP::atom)

ProjectionParametersScoreState (IMP::em2d)

SphereD (IMP::algebra)

AtomType (IMP::atom)

DockOrder (IMP.EMageFit.buildxlinks)

LateralSurfaceConstraint (IMP::core)

ProjectionStates (IMP::em2d)

SphereDistance (IMP::score_functor)

AtomTypePDBSelector (IMP::atom)

DOF (IMP::kinematics)

LeavesRefiner (IMP::core)

ProteinKinematics (IMP::kinematics)

SphereDistancePairScore (IMP::core)

AttributeOptimizer (IMP)

DOFsSampler (IMP::kinematics)

LennardJones (IMP::atom)

ProteinLigandAtomPairScore (IMP::atom)

SphereDistanceToSingletonScore (IMP::core)

AttributeSingletonPredicate (IMP::core)

DOFValues (IMP::kinematics)

LennardJonesPairScore (IMP::atom)

ProteinLigandRestraint (IMP::atom)

SphereGeometry (IMP::display)

AverageDistanceLinkage (IMP::em2d)

Domain (IMP::atom)

LessPairBySecond (IMP::em2d)

ProteinsAnchorsSamplingSpace (IMP::multifit)

SpherePatch3D (IMP::algebra)

B

DominoModel (IMP.EMageFit.domino_model)

Line3D (IMP::algebra)

ProteomicsData (IMP::multifit)

SphericalVector3D (IMP::algebra)

DominoSampler (IMP::domino)

Linear (IMP::core)

ProteomicsEMAlignmentAtomic (IMP::multifit)

SpiderHeader (IMP::em)

BackbonePDBSelector (IMP::atom)

Dope (IMP::score_functor)

Linear1DFunction (IMP::isd)

ProtocolOutput (IMP.pmi.mmcif)

SpiderImageReaderWriter (IMP::em2d)

BallMover (IMP::core)

DopePairScore (IMP::atom)

LinearFit2D (IMP::algebra)

ProtocolOutput (IMP.pmi.output)

SpiderMapReaderWriter (IMP::em)

BallMover (IMP::symmetry)

DummyRestraint (IMP::em2d)

LinearLowerBound (IMP::score_functor)

PseudoAtomicRestraint (IMP.pmi.restraints.stereochemistry)

State (IMP::atom)

BerendsenThermostatOptimizerState (IMP::atom)

DummyRestraint (IMP::multifit)

LinearVelocity (IMP::atom)

PymolWriter (IMP::display)

State (IMP.pmi.topology)

BinormalTerm (IMP::modeller)

DynamicListPairContainer (IMP::container)

ListAssignmentContainer (IMP::domino)

PythonDirectedGraph (IMP)

StateAdaptor (IMP::misc)

BinormalTerm (IMP::core)

DynamicListQuadContainer (IMP::container)

ListAssignmentsTable (IMP::domino)

PythonExampleConstraint (IMP.example)

Statistical (IMP::score_functor)

BiStableDistanceRestraint (IMP.pmi.restraints.basic)

DynamicListSingletonContainer (IMP::container)

ListPairContainer (IMP::container)

PythonExamplePairScore (IMP.example)

StatisticalPairScore (IMP::core)

BivariateFunction (IMP::isd)

DynamicListTripletContainer (IMP::container)

ListQuadContainer (IMP::container)

PythonExampleRestraint (IMP.example)

Statistics (IMP.isd.Statistics)

Bond (IMP::atom)

DynamicNearestNeighbor3D (IMP::algebra)

ListSingletonContainer (IMP::container)

PythonExampleSingletonModifier (IMP.example)

SteepestDescent (IMP::core)

ForceFieldParameters::Bond (IMP::atom)

E

ListSubsetFilterTable (IMP::domino)

PythonExampleUnaryFunction (IMP.example)

StereochemistryPairFilter (IMP::atom)

BondAngleRevoluteJoint (IMP::kinematics)

ListTripletContainer (IMP::container)

PythonScript (IMP.pmi.metadata)

StructureSource (IMP::atom)

Bonded (IMP::atom)

EdgePairGeometry (IMP::core)

LoadLink (IMP::rmf)

Q

Subset (IMP::domino)

BondedPairFilter (IMP::atom)

EdgePairsGeometry (IMP::core)

LocalPlanner (IMP::kinematics)

SubsetFilter (IMP::domino)

BondEndpointsRefiner (IMP::atom)

ElasticNetworkRestraint (IMP.pmi.restraints.stereochemistry)

LocalSlave (IMP.parallel)

QuadConstraint (IMP::core)

SubsetFilterTable (IMP::domino)

BondGeometry (IMP::atom)

ElectronMicroscopy2D (IMP.pmi.restraints.em2d)

Location (IMP.pmi.metadata)

QuadContainer (IMP)

SubsetMover (IMP::core)

BondGraph (IMP::atom)

ElectronMicroscopy2D_FFT (IMP.pmi.restraints.em2d)

LogEmbeddingD (IMP::algebra)

QuadContainerAdaptor (IMP)

Surface (IMP::core)

BondPairContainer (IMP::atom)

ElementTable (IMP::atom)

LogHolder (IMP.isd.demux_trajs)

QuadContainerSet (IMP::container)

SurfaceDepthPairScore (IMP::score_functor)

BondsGeometry (IMP::atom)

Ellipsoid3D (IMP::algebra)

LognormalAmbiguousRestraint (IMP::isd)

QuadContainerStatistics (IMP::container)

SurfaceDepthPairScore (IMP::core)

BondSingletonScore (IMP::atom)

EllipsoidGeometry (IMP::display)

LognormalRestraint (IMP::isd)

QuadModifier (IMP)

SurfaceDistancePairScore (IMP::core)

BoundedGridRangeD (IMP::algebra)

EM2DClassDataset (IMP.pmi.metadata)

LogPairScore (IMP::misc)

QuadPredicate (IMP)

SurfaceDistancePairScore (IMP::score_functor)

BoundingBoxD (IMP::algebra)

Em2DRestraint (IMP::em2d)

LogWrapper (IMP::isd)

QuadraticClosePairsFinder (IMP::core)

SurfaceGeometry (IMP::core)

BoundingBoxGeometry (IMP::display)

Em2DRestraintParameters (IMP::em2d)

LowestRefinedPairScore (IMP::misc)

QuadRestraint (IMP::core)

SurfaceGeometryConstraint (IMP::core)

BoxSweepClosePairsFinder (IMP::core)

EM2DScore (IMP::em2d)

LRUCache (IMP)

QuadsConstraint (IMP::container)

SurfaceHeightPairScore (IMP::score_functor)

BranchAndBoundAssignmentsTable (IMP::domino)

Embedding (IMP::statistics)

M

QuadScore (IMP)

SurfaceHeightPairScore (IMP::core)

BranchAndBoundSampler (IMP::domino)

EMDBLocation (IMP.pmi.metadata)

QuadsOptimizerState (IMP::container)

SurfaceMeshGeometry (IMP::display)

BrownianDynamics (IMP::atom)

EMDensityDataset (IMP.pmi.metadata)

Manager (IMP.parallel)

QuadsRestraint (IMP::container)

SurfaceMover (IMP::core)

BrownianDynamicsTAMD (IMP::atom)

EMMicrographsDataset (IMP.pmi.metadata)

MapDistanceTransform (IMP::em)

QuasiNewton (IMP::gsl)

SurfacesGeometry

BuildModel (IMP.pmi.macros)

EMReaderWriter (IMP::em)

MapReaderWriter (IMP::em)

R

SurfaceShellDensityMap (IMP::em)

BuildModel1 (IMP.pmi.macros)

Ensemble (IMP::multifit)

MarginalHBondRestraint (IMP::isd)

SurfaceSymmetryConstraint (IMP::core)

BuildSystem (IMP.pmi.macros)

EnsembleGenerator (IMP::multi_state)

MarginalNOERestraint (IMP::isd)

RadialDistributionFunction (IMP::saxs)

SurfaceTetheredChain (IMP::core)

C

Entry (IMP.isd.Entry)

MasksManager (IMP::em2d)

RadiusDependentDistanceMask (IMP::em)

Switching (IMP::isd)

EnvelopeFitRestraint (IMP::em)

Mass (IMP::atom)

RadiusOfGyrationRestraint (IMP::multifit)

Symmetric (IMP::pmi)

CAAngleRestraint (IMP::atom)

EnvelopePenetrationRestraint (IMP::em)

MassIVELocation (IMP.pmi.metadata)

RadiusOfGyrationRestraint (IMP::saxs)

SymmetryRestraint (IMP.pmi.restraints.stereochemistry)

CADihedralRestraint (IMP::atom)

EnvelopeScore (IMP::em)

MassSpecDataset (IMP.pmi.metadata)

RAII (IMP)

System (IMP.pmi.topology)

CAlphaPDBSelector (IMP::atom)

EqualitySubsetFilterTable (IMP::domino)

MasterCommunicator (IMP.parallel.master_communicator)

RangeViewAssignmentContainer (IMP::domino)

T

CappedAssignmentContainer (IMP::domino)

EquivalenceAndExclusionSubsetFilterTable (IMP::domino)

MatchTemplateResult (IMP::em2d)

RatioVolatilityScore (IMP::saxs)

CBetaPDBSelector (IMP::atom)

EquivalenceSubsetFilterTable (IMP::domino)

MaxVectorKDMetric (IMP::algebra)

ReadAssignmentContainer (IMP::domino)

TableRefiner (IMP::core)

CCDLoopClosure (IMP::kinematics)

Error (IMP.parallel)

MCCGSampler (IMP::core)

ReadHDF5AssignmentContainer (IMP::domino)

TALOSReader (IMP.isd.TALOSReader)

CenteredMat (IMP::em2d)

EuclideanMetric (IMP::statistics)

MeanAbsoluteDifference (IMP::em2d)

RecursiveAssignmentsTable (IMP::domino)

TALOSRestraint (IMP::isd)

CenterOfMass (IMP::atom)

EuclideanVectorKDMetric (IMP::algebra)

MembraneRestraint (IMP::pmi)

RecursivePartitionalClusteringEmbedding (IMP::statistics)

TAMDCentroid (IMP::atom)

Centroid (IMP::core)

EvaluationState (IMP)

Memoizer (IMP)

RecursivePartitionalClusteringMetric (IMP::statistics)

TAMDParticle (IMP::atom)

CentroidOfRefined (IMP::core)

EventException (IMP)

MergeTreeBuilder (IMP::multifit)

RecursiveStates (IMP::domino)

TempDir (IMP.test)

Chain (IMP::atom)

EventPairsOptimizerState (IMP::container)

Metadata (IMP.pmi.metadata)

RefCountChecker (IMP.test)

TempResidue (IMP.pmi.topology)

ChainPDBSelector (IMP::atom)

EventQuadsOptimizerState (IMP::container)

Metric (IMP::statistics)

Reference (IMP::core)

TestCase (IMP.test)

Charged (IMP::atom)

EventSingletonsOptimizerState (IMP::container)

MetricClosePairsFinder (IMP::misc)

ReferenceFrame3D (IMP::algebra)

TextInput (IMP)

CHARMMAtom (IMP::atom)

EventTripletsOptimizerState (IMP::container)

MinimumPairRestraint (IMP::container)

ReferenceFrameGeometry (IMP::display)

TextOutput (IMP)

CHARMMAtomTopology (IMP::atom)

ExampleComplexRestraint (IMP::example)

MinimumPairScore (IMP::container)

ReferenceFrameToText (IMP.EMageFit.imp_general.io)

TextWriter (IMP::display)

CHARMMBondEndpoint (IMP::atom)

ExampleConstraint (IMP::example)

MinimumQuadRestraint (IMP::container)

RefinedPairsPairScore (IMP::core)

TIFFImageReaderWriter (IMP::em2d)

CHARMMBondParameters (IMP::atom)

ExampleDecorator (IMP::example)

MinimumQuadScore (IMP::container)

Refiner (IMP)

Timer (IMP)

CHARMMConnection (IMP::atom)

ExampleObject (IMP::example)

MinimumRestraint (IMP::core)

Reflection3D (IMP::algebra)

TopologyPlot (IMP.pmi.plotting.topology)

CHARMMDihedralParameters (IMP::atom)

ExamplePairScore (IMP::example)

MinimumRestraintScoreSubsetFilterTable (IMP::domino)

RegistrationResult (IMP::em2d)

TopologyReader (IMP.pmi.topology)

CharmmForceFieldRestraint (IMP.pmi.restraints.stereochemistry)

ExampleRestraint (IMP::example)

MinimumSingletonRestraint (IMP::container)

RelativePositionMover (IMP::em2d)

Torus3D (IMP::algebra)

CHARMMIdealResidueTopology (IMP::atom)

ExampleSingletonModifier (IMP::example)

MinimumSingletonScore (IMP::container)

RemoteError (IMP.parallel)

TotalScoreOutput (IMP.pmi.io)

CHARMMInternalCoordinate (IMP::atom)

ExampleSubsetFilterTable (IMP::example)

MinimumTripletRestraint (IMP::container)

RemoveRigidMotionOptimizerState (IMP::atom)

Transform (IMP::core)

CHARMMParameters (IMP::atom)

ExampleTemplateClassD (IMP::example)

MinimumTripletScore (IMP::container)

RemoveTranslationOptimizerState (IMP::atom)

Transformation2D (IMP::algebra)

CHARMMPatch (IMP::atom)

ExampleUnaryFunction (IMP::example)

Model (IMP)

ReplicaExchange (IMP.pmi.samplers)

Transformation3D (IMP::algebra)

CHARMMResidueTopology (IMP::atom)

Exception (IMP)

ModelException (IMP)

ReplicaExchange (IMP::mpi)

Transformation3DToText (IMP.EMageFit.imp_general.io)

CHARMMResidueTopologyBase (IMP::atom)

ExcludedVolumeRestraint (IMP::core)

ModellerRestraints (IMP.modeller)

ReplicaExchange0 (IMP.pmi.macros)

TransformationAndReflectionSymmetry (IMP::core)

CHARMMSegmentTopology (IMP::atom)

ExcludedVolumeSphere (IMP.pmi.restraints.stereochemistry)

ModelLoader (IMP.modeller)

Repository (IMP.pmi.metadata)

TransformationJoint (IMP::kinematics)

CHARMMStereochemistryRestraint (IMP::atom)

ExclusionSubsetFilterTable (IMP::domino)

ModelObject (IMP)

Representation (IMP.pmi.representation)

TransformationSymmetry (IMP::core)

CHARMMTopology (IMP::atom)

ExclusiveConsecutivePairContainer (IMP::container)

ModifierVisitor (IMP::core)

Representation (IMP::atom)

TransformationSymmetryMover (IMP::core)

ChecksScoreState (IMP::core)

ExclusiveConsecutivePairFilter (IMP::container)

Mol2Selector (IMP::atom)

RepulsiveDistancePairScore (IMP::isd)

TransformedDistancePairScore (IMP::core)

ChiFreeScore (IMP::saxs)

ExtendedGridIndexD (IMP::algebra)

MolCnSymmAxisDetector (IMP::cnmultifit)

Residue (IMP::atom)

TransformMover (IMP::pmi)

ChildrenRefiner (IMP::core)

ExternalBarrier (IMP.pmi.restraints.basic)

MolecularDynamics (IMP::atom)

ResidueAngleRestraint (IMP.pmi.restraints.stereochemistry)

Triangle3D (IMP::algebra)

ChiScore (IMP::saxs)

EzRestraint (IMP::atom)

MolecularDynamics (IMP.pmi.samplers)

ResidueBondRestraint (IMP.pmi.restraints.stereochemistry)

TriangleGeometry (IMP::display)

ChiScoreLog (IMP::saxs)

F

MolecularDynamics (IMP::isd)

ResidueDihedralRestraint (IMP.pmi.restraints.stereochemistry)

TripletConstraint (IMP::core)

ChiSquaredScore (IMP::em2d)

MolecularDynamicsMover (IMP::isd)

ResiduePairListParser (IMP.pmi.io.crosslink)

TripletContainer (IMP)

ChiSquareMetric (IMP::statistics)

FFTFitting (IMP::multifit)

Molecule (IMP::atom)

ResidueRotamer (IMP::rotamer)

TripletContainerAdaptor (IMP)

Citation (IMP.pmi.metadata)

FFTFittingOutput (IMP::multifit)

Molecule (IMP.pmi.topology)

ResidueType (IMP::atom)

TripletContainerSet (IMP::container)

CloseBipartitePairContainer (IMP::container)

FileLocation (IMP.pmi.metadata)

MonteCarlo (IMP.pmi.samplers)

ResidueTypePDBSelector (IMP::atom)

TripletContainerStatistics (IMP::container)

ClosedCubicSpline (IMP::core)

FilterGeometry (IMP::display)

MonteCarlo (IMP::core)

Resolution (IMP::pmi)

TripletModifier (IMP)

ClosePairContainer (IMP::container)

FilterOperator (IMP.pmi.io.crosslink)

MonteCarloMover (IMP::core)

Restraint (IMP)

TripletPredicate (IMP)

ClosePairsFinder (IMP::core)

Fine2DRegistrationRestraint (IMP::em2d)

MonteCarloMoverResult (IMP::core)

Restraint (IMP::saxs)

TripletRestraint (IMP::core)

ClosePairsPairScore (IMP::core)

FitParameters (IMP::saxs)

MonteCarloRelativeMoves (IMP.EMageFit.monte_carlo)

RestraintBase (IMP.pmi.restraints)

TripletsConstraint (IMP::container)

Clustering (IMP.pmi.analysis)

FitRestraint (IMP::em)

MonteCarloWithBasinHopping (IMP::core)

RestraintCache (IMP::domino)

TripletScore (IMP)

ClusterSet (IMP::em2d)

FittingSolutionRecord (IMP::multifit)

MonteCarloWithLocalOptimization (IMP::core)

RestraintGeometry (IMP::display)

TripletsOptimizerState (IMP::container)

CnSymmAxisDetector (IMP::cnmultifit)

FittingSolutions (IMP::em)

MoveStatisticsScoreState (IMP::core)

RestraintsAdaptor (IMP)

TripletsRestraint (IMP::container)

CoarseCC (IMP::em)

FittingStates (IMP::multifit)

MRCReaderWriter (IMP::em)

RestraintScoreSubsetFilterTable (IMP::domino)

TruncatedHarmonic (IMP::core)

CoarseCCatIntervals (IMP::em)

FixedFormatParser (IMP.pmi.io.crosslink)

MSConnectivityRestraint (IMP::core)

RestraintSet (IMP)

Typed (IMP::core)

CoarseConvolution (IMP::em)

FixedRefiner (IMP::core)

MultipleBinormalRestraint (IMP::modeller)

RestraintSetGeometry (IMP::display)

TypedPairScore (IMP::core)

CoinFlipPairPredicate (IMP::core)

FixedXYZ (IMP::algebra)

MultipleBinormalRestraint (IMP::core)

RestraintsScoringFunction (IMP::core)

TypeException (IMP)

CoinFlipQuadPredicate (IMP::core)

Flag (IMP)

MultiStateModel (IMP::multi_state)

ResultsDB (IMP.EMageFit.solutions_io)

U

CoinFlipSingletonPredicate (IMP::core)

FloatIndex (IMP)

MultiStateModelScore (IMP::multi_state)

RevoluteJoint (IMP::kinematics)

CoinFlipTripletPredicate (IMP::core)

FNormal (IMP::isd)

MultivariateFNormalSufficient (IMP::isd)

RevoluteJointMover (IMP::kinematics)

UnaryFunction (IMP)

CollisionCrossSection (IMP::em2d)

ForceFieldParameters (IMP::atom)

MyMetric (write_a_metric)

RigidBodiesImageFitRestraint (IMP::em2d)

UnaryFunctionEvaluate (IMP::score_functor)

Color (IMP::display)

ForceSwitch (IMP::atom)

N

RigidBodiesProfileHandler (IMP::saxs)

UnboundedGridRangeD (IMP::algebra)

ColorChange (IMP.pmi.tools)

FormFactorTable (IMP::saxs)

RigidBody (IMP::core)

Uncertainty (IMP::pmi)

Colored (IMP::display)

Fragment (IMP::atom)

NearestNeighborD (IMP::algebra)

RigidBodyAnglePairScore (IMP::core)

UncheckedWeakPointer (IMP)

CommandDispatcher (IMP)

FreelyJointedChain (IMP::misc)

NearestNeighborsClosePairsFinder (IMP::core)

RigidBodyDerivativeGeometry (IMP::core)

Undecorator (IMP)

CommonEndpointPairFilter (IMP::misc)

FretData (IMP::isd)

NeighborsTable (IMP::core)

RigidBodyDerivativesGeometry (IMP::core)

UniformBackboneSampler (IMP::kinematics)

ComparativeModelDataset (IMP.pmi.metadata)

FretRestraint (IMP::isd)

NestedRigidBodyStates (IMP::domino)

RigidBodyDiffusion (IMP::atom)

UniformPrior (IMP::isd)

CompareMultiStateModels (IMP::multi_state)

FusionRestraint (IMP.pmi.restraints.stereochemistry)

NetworkError (IMP.parallel)

RigidBodyDistancePairScore (IMP::core)

UnivariateFunction (IMP::isd)

ComplementarityRestraint (IMP::multifit)

FuzzyBoolean (IMP.pmi.restraints.proteomics)

NOERestraint (IMP::isd)

RigidBodyFrameGeometry (IMP::core)

UnorderedTypePairPredicate (IMP::core)

CompleteLinkage (IMP::em2d)

FuzzyRestraint (IMP.pmi.restraints.proteomics)

NoMoreSlavesError (IMP.parallel)

RigidBodyFramesGeometry (IMP::core)

UnorderedTypeQuadPredicate (IMP::core)

ComponentHeader (IMP::multifit)

G

NonAlternativePDBSelector (IMP::atom)

RigidBodyHierarchyGeometry (IMP::core)

UnorderedTypeSingletonPredicate (IMP::core)

CompositeJoint (IMP::kinematics)

NonCopyable (IMP)

RigidBodyMember (IMP::core)

UnorderedTypeTripletPredicate (IMP::core)

CompositeRestraint (IMP.pmi.restraints.proteomics)

Gaussian (IMP::core)

NonHydrogenMol2Selector (IMP::atom)

RigidBodyMover (IMP::core)

UsageException (IMP)

CompositeRestraint (IMP::pmi)

Gaussian3D (IMP::algebra)

NonHydrogenPDBSelector (IMP::atom)

RigidBodyMover (IMP::symmetry)

V

CompoundStates (IMP::domino)

GaussianAnchorEMRestraint (IMP::isd)

NonRigidMember (IMP::core)

RigidBodyStates (IMP::domino)

Cone3D (IMP::algebra)

GaussianEMRestraint (IMP.pmi.restraints.em)

NonWaterNonHydrogenPDBSelector (IMP::atom)

RigidBodyTorque (IMP::core)

Value (IMP)

Configuration (IMP)

GaussianEMRestraint (IMP::isd)

NonWaterPDBSelector (IMP::atom)

RigidBodyTunneler (IMP::core)

ValueException (IMP)

ConfigurationSet (IMP)

GaussianProcessInterpolation (IMP::isd)

NormalizedSphereDistancePairScore (IMP::core)

RigidBodyUmbrella (IMP::core)

Vector (IMP)

ConfigurationSetRMSDMetric (IMP::statistics)

GaussianProcessInterpolationRestraint (IMP::isd)

NormalMover (IMP::core)

RigidClosePairsFinder (IMP::core)

VectorBaseD (IMP::algebra)

ConfigurationSetXYZEmbedding (IMP::statistics)

GaussianRestraint (IMP::isd)

NotPDBSelector (IMP::atom)

RigidLeavesRefiner (IMP::multifit)

VectorD (IMP::algebra)

ConjugateGradients (IMP.pmi.samplers)

GeneralizedGuinierPorodFunction (IMP::isd)

NPDBSelector (IMP::atom)

RigidMember (IMP::core)

VectorDEmbedding (IMP::statistics)

ConjugateGradients (IMP::gsl)

GenericAttributeSingletonScore (IMP::core)

Nuisance (IMP::isd)

RMSDOutput (IMP.pmi.io)

VectorKDMetric (IMP::algebra)

ConjugateGradients (IMP::core)

GenericBoundingBox3DSingletonScore (IMP::core)

O

RootMetadata (IMP.pmi.metadata)

VelocityScalingOptimizerState (IMP::atom)

ConnectingPairContainer (IMP::container)

GenericDistanceToSingletonScore (IMP::core)

RotamerAngleTuple (IMP::rotamer)

VersionInfo (IMP)

ConnectivityCrossLinkMS (IMP.pmi.restraints.crosslinking)

GeometricHash (IMP::multifit)

Object (IMP)

RotamerCalculator (IMP::rotamer)

VolumeRestraint (IMP::core)

ConnectivityNetworkRestraint (IMP.pmi.restraints.proteomics)

GeometricPrimitiveD (IMP::algebra)

OpenCubicSpline (IMP::core)

RotamerLibrary (IMP::rotamer)

Voxel (IMP::em)

ConnectivityRestraint (IMP.pmi.restraints.proteomics)

Geometry (IMP::display)

OpenCubicSpline (IMP::score_functor)

Rotation2D (IMP::algebra)

W

ConnectivityRestraint (IMP.pmi.restraints.stereochemistry)

GeometryProcessor (IMP::display)

Optimizer (IMP)

Rotation3D (IMP::algebra)

ConnectivityRestraint (IMP::core)

GeometrySet (IMP::display)

OptimizerState (IMP)

RRT (IMP::kinematics)

WarningContext (IMP)

ConnollySurfacePoint (IMP::algebra)

GetModelDensity (IMP.pmi.analysis)

OptionParser (IMP)

RRT::RRTNode (IMP::kinematics)

WaterPDBSelector (IMP::atom)

ConsecutivePairContainer (IMP::container)

GetRMSD (IMP.pmi.analysis)

Order (IMP::domino)

RunInTempDir (IMP.test)

WeakPointer (IMP)

ConsecutivePairFilter (IMP::container)

GridClosePairsFinder (IMP::core)

OrderedDefaultDict (IMP.pmi.tools)

S

Weight (IMP::isd)

ConstantPairPredicate (IMP::core)

GridD (IMP::algebra)

OrderedTypePairPredicate (IMP::core)

WeightedDerivativesToRefined (IMP::core)

ConstantQuadPredicate (IMP::core)

GridIndexD (IMP::algebra)

OrderedTypeQuadPredicate (IMP::core)

SameResiduePairFilter (IMP::atom)

WeightedExcludedVolumeRestraint (IMP::multifit)

ConstantRestraint (IMP::core)

GridStates (IMP::em2d)

OrderedTypeSingletonPredicate (IMP::core)

SampleAssignmentContainer (IMP::domino)

WeightedFitParameters (IMP::saxs)

ConstantSingletonPredicate (IMP::core)

GSLOptimizer (IMP::gsl)

OrderedTypeTripletPredicate (IMP::core)

SampledDensityMap (IMP::em)

WeightedProfileFitter (IMP::saxs)

ConstantTripletPredicate (IMP::core)

H

OrientedSoap (IMP::score_functor)

Sampler (IMP)

WeightedSphereDistancePairScore (IMP::core)

Constraint (IMP)

OrientedSoapPairScore (IMP::atom)

SaveLink (IMP::rmf)

WeightedSum (IMP::core)

ConstVector (IMP)

Harmonic (IMP::core)

OrPDBSelector (IMP::atom)

SaveOptimizerState (IMP::rmf)

WeightedSumOfExponential (IMP::core)

Container (IMP)

Harmonic (IMP::score_functor)

Output (IMP.pmi.output)

SaveToConfigurationSetOptimizerState (IMP)

WeightMover (IMP::isd)

Context (IMP.parallel)

HarmonicDistancePairScore (IMP::core)

P

SAXSISDRestraint (IMP.pmi.restraints.saxs)

WeightRestraint (IMP::isd)

Copy (IMP::atom)

HarmonicLowerBound (IMP::core)

SAXSMultiStateModelScore (IMP::multi_state)

WeightRestraint (IMP.pmi.restraints.parameters)

Cosine (IMP::core)

HarmonicLowerBound (IMP::score_functor)

PackedAssignmentContainer (IMP::domino)

SAXSRestraint (IMP.pmi.restraints.saxs)

WeightScore (IMP::score_functor)

CoulombPairScore (IMP::atom)

HarmonicSphereDistancePairScore (IMP::core)

PairConstraint (IMP::core)

Scale (IMP::isd)

WormLikeChain (IMP::misc)

Covariance1DFunction (IMP::isd)

HarmonicSurfaceDepthPairScore (IMP::core)

PairContainer (IMP)

ScopedAddCacheAttribute (IMP)

WriteAssignmentContainer (IMP::domino)

Cover (IMP::core)

HarmonicSurfaceDistancePairScore (IMP::core)

PairContainerAdaptor (IMP)

ScopedSetAttribute (IMP)

WriteHDF5AssignmentContainer (IMP::domino)

CoverBond (IMP::atom)

HarmonicSurfaceHeightPairScore (IMP::core)

PairContainerSet (IMP::container)

Score (IMP::score_functor)

WriteOptimizerState (IMP::display)

CoverRefined (IMP::core)

HarmonicUpperBound (IMP::core)

PairContainerStatistics (IMP::container)

ScoreAccumulator (IMP)

WritePDBOptimizerState (IMP::atom)

CPDBSelector (IMP::atom)

HarmonicUpperBound (IMP::score_functor)

PairGeometry (IMP::display)

ScoreFunction (IMP::em2d)

Writer (IMP::display)

CreateLogContext (IMP)

HarmonicUpperBoundSphereDiameterPairScore (IMP::core)

PairListSubsetFilterTable (IMP::domino)

ScoreState (IMP)

WriterAdaptor (IMP::display)

CrossCorrelationRestraint (IMP.pmi.restraints.em)

HarmonicUpperBoundSphereDistancePairScore (IMP::core)

PairModifier (IMP)

ScoreUnaryFunction (IMP::score_functor)

WriteRestraintScoresOptimizerState (IMP::core)

CrossLinkData (IMP::isd)

HarmonicWell (IMP::core)

PairPredicate (IMP)

ScoringFunction (IMP)

X

CrossLinkDataBaseFromStructure (IMP.pmi.io.crosslink)

HasHigherCCC (IMP::em2d)

PairRestraint (IMP::core)

ScoringFunctionAdaptor (IMP)

CrossLinkDataBaseKeywordsConverter (IMP.pmi.io.crosslink)

HasLowerScore (IMP::em2d)

PairsConstraint (IMP::container)

SecondaryStructure (IMP.pmi.restraints.stereochemistry)

Xlink (IMP.EMageFit.buildxlinks)

CrossLinkingMassSpectrometryRestraint (IMP.pmi.restraints.crosslinking)

HeapAssignmentContainer (IMP::domino)

PairScore (IMP)

SecondaryStructureResidue (IMP::atom)

XlinksDict (IMP.EMageFit.buildxlinks)

CrossLinkMS (IMP.pmi.nonmantained)

HeapRecord (IMP.EMageFit.solutions_io)

PairsGeometry (IMP::display)

Segment3D (IMP::algebra)

XLTable (IMP.pmi.io.xltable)

CrossLinkMSRestraint (IMP::isd)

HelixRestraint (IMP.pmi.restraints.stereochemistry)

PairsOptimizerState (IMP::container)

SegmentationParameters (IMP::em2d)

XorPDBSelector (IMP::atom)

CrossLinkTable (IMP.pmi.analysis)

HelixRestraint (IMP::atom)

PairsRestraint (IMP::container)

SegmentGeometry (IMP::display)

XplorReaderWriter (IMP::em)

CustomXYZR (IMP::misc)

HierarchiesGeometry (IMP::atom)

ParabolicFit2D (IMP::algebra)

Segments (IMP.pmi.tools)

XYZ (IMP::core)

CvEstimator (IMP.isd.TuneRex)

Hierarchy (IMP::core)

Particle (IMP)

Selection (IMP::atom)

XYZDerivativeGeometry (IMP::core)

CXMSDataset (IMP.pmi.metadata)

Hierarchy (IMP::atom)

ParticleAdaptor (IMP)

SelectionGeometry (IMP::atom)

XYZDerivativesGeometry (IMP::core)

Cylinder3D (IMP::algebra)

HierarchyCounter (IMP::core)

ParticleEmbedding (IMP::statistics)

Sequences (IMP.pmi.topology)

XYZR (IMP::core)

CylinderGeometry (IMP::display)

HierarchyDatabase (IMP.pmi.tools)

ParticleIndexAdaptor (IMP)

SerialMover (IMP::core)

XYZRGeometry (IMP::core)

CylinderRestraint (IMP.pmi.restraints.basic)

HierarchyGeometry (IMP::atom)

ParticleIndexesAdaptor (IMP)

SetCheckState (IMP)

XYZRsGeometry (IMP::core)

CysteineCrossLinkData (IMP::isd)

HierarchyLoadLink (IMP::rmf)

ParticleIndexPairsAdaptor (IMP)

SetLogState (IMP)

XYZStates (IMP::domino)

CysteineCrossLinkRestraint (IMP::isd)

HierarchySaveLink (IMP::rmf)

ParticleInputs (IMP)

SetLogTarget (IMP)

p

D

HierarchyTraits (IMP::core)

ParticleOutputs (IMP)

SetNumberOfThreads (IMP)

HierarchyVisitor (IMP::core)

ParticlesAdaptor (IMP::domino)

SettingsData (IMP::multifit)

piecewise_linear_distribution (IMP)

Database2 (IMP.EMageFit.database)

HighDensityEmbedding (IMP::em)

ParticlesDummyRestraint (IMP::em2d)

SetupConnectivityNetworkRestraint (IMP.pmi.restraints.proteomics)

s

DatabaseLocation (IMP.pmi.metadata)

HistogramD (IMP::statistics)

ParticleStates (IMP::domino)

SetupMembraneRestraint (IMP.pmi.restraints.proteomics)

DataObject (IMP::core)

History (IMP.isd.History)

ParticleStatesTable (IMP::domino)

SGEPESlaveArray (IMP.parallel)

sfo_common (IMP.isd.shared_functions)

DataPointsAssignment (IMP::multifit)

HybridMonteCarlo (IMP::isd)

PartitionalClustering (IMP::statistics)

SGEQsubSlaveArray (IMP.parallel)

v

Dataset (IMP.pmi.metadata)

HydrogenPDBSelector (IMP::atom)

PartitionalClusteringWithCenter (IMP::statistics)

Shift (IMP::score_functor)

DecayPairContainerOptimizerState (IMP::misc)

I

PathLocalPlanner (IMP::kinematics)

Showable (IMP)

vonMises (IMP::isd)

Image (IMP::em2d)

A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X