|
| Decorator (IMP) | ImageHeader (IMP::em) | PCAAligner (IMP::em) | SigmoidRestraintSphere (IMP::pmi) |
| DefaultEmbeddingD (IMP::algebra) | ImageReaderWriter (IMP::em2d) | PCAFitRestraint (IMP::em) | SimpleAssignmentsTable (IMP::domino) |
| AddBoolFlag (IMP) | DegreesOfFreedom (IMP.pmi.dof) | IMPRestraints (IMP.modeller) | PCAFitRestraint (IMP::em2d) | SimpleLoadLink (IMP::rmf) |
| AddFloatFlag (IMP) | DeltaDistributionFunction (IMP::saxs) | ImproperSingletonScore (IMP::atom) | PDBDataset (IMP.pmi.metadata) | SimpleSaveLink (IMP::rmf) |
| AddIntFlag (IMP) | Demuxer (IMP.isd.demux_trajs) | InBoundingBox3DSingletonPredicate (IMP::core) | PDBLocation (IMP.pmi.metadata) | Simplex (IMP::gsl) |
| AddScores (IMP::score_functor) | DenseFloatLogGridKD (IMP::algebra) | InContainerPairFilter (IMP::container) | PDBSelector (IMP::atom) | Simulator (IMP::atom) |
| AddStringFlag (IMP) | DenseGrid3D (IMP::algebra) | InContainerQuadFilter (IMP::container) | PDBSequences (IMP.pmi.topology) | SingleLinkage (IMP::em2d) |
| AdvancedFlag (IMP) | DenseGridStorageD (IMP::algebra) | InContainerSingletonFilter (IMP::container) | PermutationStates (IMP::domino) | SingletonConstraint (IMP::core) |
| Alignment (IMP.pmi.analysis) | DenseIntLogGrid3D (IMP::algebra) | InContainerTripletFilter (IMP::container) | Pipe (IMP.isd.utils) | SingletonContainer (IMP) |
| AlignmentClustering (IMP.multifit.cluster) | DensityDataPoints (IMP::multifit) | IncrementalScoringFunction (IMP::core) | PivyWriter (IMP::display) | SingletonContainerAdaptor (IMP) |
| AlignSymmetric (IMP::cnmultifit) | DensityFillingRestraint (IMP::em) | Index (IMP) | Plane3D (IMP::algebra) | SingletonContainerSet (IMP::container) |
| AllBipartitePairContainer (IMP::container) | DensityHeader (IMP::em) | IndexException (IMP) | PlaneDihedralRestraint (IMP.pmi.restraints.stereochemistry) | SingletonContainerStatistics (IMP::container) |
| AllMol2Selector (IMP::atom) | DensityMap (IMP::em) | IndexStates (IMP::domino) | PlaneGeometry (IMP::display) | SingletonGeometry (IMP::display) |
| AllPairContainer (IMP::container) | DependencyScoreState (IMP::domino) | IndexVector (IMP) | Pointer (IMP) | SingletonModifier (IMP) |
| AllPDBSelector (IMP::atom) | DerivativeAccumulator (IMP) | InitialDockingFromXlinks (IMP.EMageFit.buildxlinks) | PointerMember (IMP) | SingletonPredicate (IMP) |
| AllSamePairPredicate (IMP::core) | DerivativeCalculator (IMP::saxs) | InputAdaptor (IMP) | PointGeometry (IMP::display) | SingletonRestraint (IMP::core) |
| AllSameQuadPredicate (IMP::core) | DerivativesFromRefined (IMP::core) | InternalException (IMP) | PointToSphereDistance (IMP::score_functor) | SingletonsConstraint (IMP::container) |
| AllSameSingletonPredicate (IMP::core) | DerivativesToRefined (IMP::core) | IntsOrder (IMP::em2d) | PolarResamplingParameters (IMP::em2d) | SingletonScore (IMP) |
| AllSameTripletPredicate (IMP::core) | DiameterRestraint (IMP::core) | IOException (IMP) | PolygonGeometry (IMP::display) | SingletonsGeometry (IMP::display) |
| AmbiguousCompositeRestraint (IMP.pmi.restraints.proteomics) | Diffusion (IMP::atom) | IsCollisionPairPredicate (IMP::core) | PPDBSelector (IMP::atom) | SingletonsOptimizerState (IMP::container) |
| AmbiguousNOERestraint (IMP::isd) | Dihedral (IMP::atom) | ISDRestraint (IMP::isd) | Precision (IMP.pmi.analysis) | SingletonsRestraint (IMP::container) |
| AmbiguousRestraint (IMP::isd) | DihedralAngleRevoluteJoint (IMP::kinematics) | IsosurfaceGeometry (IMP::display) | PredicatePairsRestraint (IMP::container) | SingletonStatistical (IMP::score_functor) |
| Analysis (IMP.isd.Analysis) | DihedralRestraint (IMP::core) |
| PredicateQuadsRestraint (IMP::container) | SkinSurfaceGeometry (IMP::display) |
| AnalysisReplicaExchange0 (IMP.pmi.macros) | DihedralSingletonScore (IMP::atom) | PredicateSingletonScore (IMP::core) | Slave (IMP.parallel) |
| AnchorsData (IMP::multifit) | DirectionalDOF (IMP::kinematics) | JeffreysPrior (IMP.pmi.restraints.parameters) | PredicateSingletonsRestraint (IMP::container) | SlaveArray (IMP.parallel) |
| AndPDBSelector (IMP::atom) | DirectorObjectChecker (IMP.test) | JeffreysRestraint (IMP::isd) | PredicateTripletsRestraint (IMP::container) | Slice (IMP::domino) |
| Angle (IMP::atom) | DiscreteSampler (IMP::domino) | Joint (IMP::kinematics) | PrincipalComponentAnalysisD (IMP::algebra) | SmoothingFunction (IMP::atom) |
| AngleRestraint (IMP::core) | DisjointSetsSubsetFilterTable (IMP::domino) | JPGImageReaderWriter (IMP::em2d) | PrismaticJoint (IMP::kinematics) | Soap (IMP::score_functor) |
| AngleSingletonScore (IMP::atom) | DistanceFilter (IMP::em2d) |
| ProbabilisticAnchorGraph (IMP::multifit) | SoapPairFilter (IMP::atom) |
| AngleTripletScore (IMP::core) | DistanceFilterTable (IMP::em2d) | ProbabilisticSubsetFilterTable (IMP::domino) | SoftCylinderPairScore (IMP::misc) |
| AngularVelocity (IMP::atom) | DistanceMask (IMP::em) | KClosePairsPairScore (IMP::core) | ProcessOutput (IMP.pmi.output) | SoftSpherePairScore (IMP::core) |
| ApplicationTestCase (IMP.test) | DistancePairScore (IMP::core) | KernelParameters (IMP::em) | Profile (IMP::saxs) | SoftSubSurfacePairScore (IMP::core) |
| Array (IMP) | DistancePairScore (IMP::score_functor) | Key (IMP) | ProfileClustering (IMP::saxs) | SoftSuperSurfacePairScore (IMP::core) |
| AssemblyHeader (IMP::multifit) | DistanceRestraint (IMP.pmi.restraints.basic) | KinematicForest (IMP::kinematics) | ProfileFitter (IMP::saxs) | Software (IMP.pmi.metadata) |
| Assignment (IMP::domino) | DistanceRestraint (IMP::core) | KinematicForestScoreState (IMP::kinematics) | Profiler (IMP::benchmark) | SolventAccessibleSurface (IMP::saxs) |
| AssignmentContainer (IMP::domino) | DistanceToPointRestraint (IMP.pmi.restraints.basic) | KinematicNode (IMP::kinematics) | ProjectingOptions (IMP::em2d) | SparseGrid3D (IMP::algebra) |
| AssignmentsTable (IMP::domino) | DistributePairsScoreState (IMP::container) | KMeans (IMP::kmeans) | ProjectingParameters (IMP::em2d) | SparseGridStorageD (IMP::algebra) |
| Atom (IMP::atom) | DistributeQuadsScoreState (IMP::container) |
| ProjectionFinder (IMP::em2d) | SparseSymmetricPairMemoizer (IMP) |
| AtomicCrossLinkMSRestraint (IMP.pmi.restraints.crosslinking) | DistributeSingletonsScoreState (IMP::container) | ProjectionMask (IMP::em2d) | SparseUnboundedGrid3D (IMP::algebra) |
| AtomicCrossLinkMSRestraint (IMP::isd) | DistributeTripletsScoreState (IMP::container) | LabelGeometry (IMP::display) | ProjectionParameters (IMP::em2d) | SparseUnboundedGridD (IMP::algebra) |
| ATOMPDBSelector (IMP::atom) | Distribution (IMP::saxs) | LangevinThermostatOptimizerState (IMP::atom) | ProjectionParametersScoreState (IMP::em2d) | SphereD (IMP::algebra) |
| AtomType (IMP::atom) | DockOrder (IMP.EMageFit.buildxlinks) | LateralSurfaceConstraint (IMP::core) | ProjectionStates (IMP::em2d) | SphereDistance (IMP::score_functor) |
| AtomTypePDBSelector (IMP::atom) | DOF (IMP::kinematics) | LeavesRefiner (IMP::core) | ProteinKinematics (IMP::kinematics) | SphereDistancePairScore (IMP::core) |
| AttributeOptimizer (IMP) | DOFsSampler (IMP::kinematics) | LennardJones (IMP::atom) | ProteinLigandAtomPairScore (IMP::atom) | SphereDistanceToSingletonScore (IMP::core) |
| AttributeSingletonPredicate (IMP::core) | DOFValues (IMP::kinematics) | LennardJonesPairScore (IMP::atom) | ProteinLigandRestraint (IMP::atom) | SphereGeometry (IMP::display) |
| AverageDistanceLinkage (IMP::em2d) | Domain (IMP::atom) | LessPairBySecond (IMP::em2d) | ProteinsAnchorsSamplingSpace (IMP::multifit) | SpherePatch3D (IMP::algebra) |
|
| DominoModel (IMP.EMageFit.domino_model) | Line3D (IMP::algebra) | ProteomicsData (IMP::multifit) | SphericalVector3D (IMP::algebra) |
| DominoSampler (IMP::domino) | Linear (IMP::core) | ProteomicsEMAlignmentAtomic (IMP::multifit) | SpiderHeader (IMP::em) |
| BackbonePDBSelector (IMP::atom) | Dope (IMP::score_functor) | Linear1DFunction (IMP::isd) | ProtocolOutput (IMP.pmi.mmcif) | SpiderImageReaderWriter (IMP::em2d) |
| BallMover (IMP::core) | DopePairScore (IMP::atom) | LinearFit2D (IMP::algebra) | ProtocolOutput (IMP.pmi.output) | SpiderMapReaderWriter (IMP::em) |
| BallMover (IMP::symmetry) | DummyRestraint (IMP::em2d) | LinearLowerBound (IMP::score_functor) | PseudoAtomicRestraint (IMP.pmi.restraints.stereochemistry) | State (IMP::atom) |
| BerendsenThermostatOptimizerState (IMP::atom) | DummyRestraint (IMP::multifit) | LinearVelocity (IMP::atom) | PymolWriter (IMP::display) | State (IMP.pmi.topology) |
| BinormalTerm (IMP::modeller) | DynamicListPairContainer (IMP::container) | ListAssignmentContainer (IMP::domino) | PythonDirectedGraph (IMP) | StateAdaptor (IMP::misc) |
| BinormalTerm (IMP::core) | DynamicListQuadContainer (IMP::container) | ListAssignmentsTable (IMP::domino) | PythonExampleConstraint (IMP.example) | Statistical (IMP::score_functor) |
| BiStableDistanceRestraint (IMP.pmi.restraints.basic) | DynamicListSingletonContainer (IMP::container) | ListPairContainer (IMP::container) | PythonExamplePairScore (IMP.example) | StatisticalPairScore (IMP::core) |
| BivariateFunction (IMP::isd) | DynamicListTripletContainer (IMP::container) | ListQuadContainer (IMP::container) | PythonExampleRestraint (IMP.example) | Statistics (IMP.isd.Statistics) |
| Bond (IMP::atom) | DynamicNearestNeighbor3D (IMP::algebra) | ListSingletonContainer (IMP::container) | PythonExampleSingletonModifier (IMP.example) | SteepestDescent (IMP::core) |
| ForceFieldParameters::Bond (IMP::atom) |
| ListSubsetFilterTable (IMP::domino) | PythonExampleUnaryFunction (IMP.example) | StereochemistryPairFilter (IMP::atom) |
| BondAngleRevoluteJoint (IMP::kinematics) | ListTripletContainer (IMP::container) | PythonScript (IMP.pmi.metadata) | StructureSource (IMP::atom) |
| Bonded (IMP::atom) | EdgePairGeometry (IMP::core) | LoadLink (IMP::rmf) |
| Subset (IMP::domino) |
| BondedPairFilter (IMP::atom) | EdgePairsGeometry (IMP::core) | LocalPlanner (IMP::kinematics) | SubsetFilter (IMP::domino) |
| BondEndpointsRefiner (IMP::atom) | ElasticNetworkRestraint (IMP.pmi.restraints.stereochemistry) | LocalSlave (IMP.parallel) | QuadConstraint (IMP::core) | SubsetFilterTable (IMP::domino) |
| BondGeometry (IMP::atom) | ElectronMicroscopy2D (IMP.pmi.restraints.em2d) | Location (IMP.pmi.metadata) | QuadContainer (IMP) | SubsetMover (IMP::core) |
| BondGraph (IMP::atom) | ElectronMicroscopy2D_FFT (IMP.pmi.restraints.em2d) | LogEmbeddingD (IMP::algebra) | QuadContainerAdaptor (IMP) | Surface (IMP::core) |
| BondPairContainer (IMP::atom) | ElementTable (IMP::atom) | LogHolder (IMP.isd.demux_trajs) | QuadContainerSet (IMP::container) | SurfaceDepthPairScore (IMP::score_functor) |
| BondsGeometry (IMP::atom) | Ellipsoid3D (IMP::algebra) | LognormalAmbiguousRestraint (IMP::isd) | QuadContainerStatistics (IMP::container) | SurfaceDepthPairScore (IMP::core) |
| BondSingletonScore (IMP::atom) | EllipsoidGeometry (IMP::display) | LognormalRestraint (IMP::isd) | QuadModifier (IMP) | SurfaceDistancePairScore (IMP::core) |
| BoundedGridRangeD (IMP::algebra) | EM2DClassDataset (IMP.pmi.metadata) | LogPairScore (IMP::misc) | QuadPredicate (IMP) | SurfaceDistancePairScore (IMP::score_functor) |
| BoundingBoxD (IMP::algebra) | Em2DRestraint (IMP::em2d) | LogWrapper (IMP::isd) | QuadraticClosePairsFinder (IMP::core) | SurfaceGeometry (IMP::core) |
| BoundingBoxGeometry (IMP::display) | Em2DRestraintParameters (IMP::em2d) | LowestRefinedPairScore (IMP::misc) | QuadRestraint (IMP::core) | SurfaceGeometryConstraint (IMP::core) |
| BoxSweepClosePairsFinder (IMP::core) | EM2DScore (IMP::em2d) | LRUCache (IMP) | QuadsConstraint (IMP::container) | SurfaceHeightPairScore (IMP::score_functor) |
| BranchAndBoundAssignmentsTable (IMP::domino) | Embedding (IMP::statistics) |
| QuadScore (IMP) | SurfaceHeightPairScore (IMP::core) |
| BranchAndBoundSampler (IMP::domino) | EMDBLocation (IMP.pmi.metadata) | QuadsOptimizerState (IMP::container) | SurfaceMeshGeometry (IMP::display) |
| BrownianDynamics (IMP::atom) | EMDensityDataset (IMP.pmi.metadata) | Manager (IMP.parallel) | QuadsRestraint (IMP::container) | SurfaceMover (IMP::core) |
| BrownianDynamicsTAMD (IMP::atom) | EMMicrographsDataset (IMP.pmi.metadata) | MapDistanceTransform (IMP::em) | QuasiNewton (IMP::gsl) | SurfacesGeometry |
| BuildModel (IMP.pmi.macros) | EMReaderWriter (IMP::em) | MapReaderWriter (IMP::em) |
| SurfaceShellDensityMap (IMP::em) |
| BuildModel1 (IMP.pmi.macros) | Ensemble (IMP::multifit) | MarginalHBondRestraint (IMP::isd) | SurfaceSymmetryConstraint (IMP::core) |
| BuildSystem (IMP.pmi.macros) | EnsembleGenerator (IMP::multi_state) | MarginalNOERestraint (IMP::isd) | RadialDistributionFunction (IMP::saxs) | SurfaceTetheredChain (IMP::core) |
|
| Entry (IMP.isd.Entry) | MasksManager (IMP::em2d) | RadiusDependentDistanceMask (IMP::em) | Switching (IMP::isd) |
| EnvelopeFitRestraint (IMP::em) | Mass (IMP::atom) | RadiusOfGyrationRestraint (IMP::multifit) | Symmetric (IMP::pmi) |
| CAAngleRestraint (IMP::atom) | EnvelopePenetrationRestraint (IMP::em) | MassIVELocation (IMP.pmi.metadata) | RadiusOfGyrationRestraint (IMP::saxs) | SymmetryRestraint (IMP.pmi.restraints.stereochemistry) |
| CADihedralRestraint (IMP::atom) | EnvelopeScore (IMP::em) | MassSpecDataset (IMP.pmi.metadata) | RAII (IMP) | System (IMP.pmi.topology) |
| CAlphaPDBSelector (IMP::atom) | EqualitySubsetFilterTable (IMP::domino) | MasterCommunicator (IMP.parallel.master_communicator) | RangeViewAssignmentContainer (IMP::domino) |
|
| CappedAssignmentContainer (IMP::domino) | EquivalenceAndExclusionSubsetFilterTable (IMP::domino) | MatchTemplateResult (IMP::em2d) | RatioVolatilityScore (IMP::saxs) |
| CBetaPDBSelector (IMP::atom) | EquivalenceSubsetFilterTable (IMP::domino) | MaxVectorKDMetric (IMP::algebra) | ReadAssignmentContainer (IMP::domino) | TableRefiner (IMP::core) |
| CCDLoopClosure (IMP::kinematics) | Error (IMP.parallel) | MCCGSampler (IMP::core) | ReadHDF5AssignmentContainer (IMP::domino) | TALOSReader (IMP.isd.TALOSReader) |
| CenteredMat (IMP::em2d) | EuclideanMetric (IMP::statistics) | MeanAbsoluteDifference (IMP::em2d) | RecursiveAssignmentsTable (IMP::domino) | TALOSRestraint (IMP::isd) |
| CenterOfMass (IMP::atom) | EuclideanVectorKDMetric (IMP::algebra) | MembraneRestraint (IMP::pmi) | RecursivePartitionalClusteringEmbedding (IMP::statistics) | TAMDCentroid (IMP::atom) |
| Centroid (IMP::core) | EvaluationState (IMP) | Memoizer (IMP) | RecursivePartitionalClusteringMetric (IMP::statistics) | TAMDParticle (IMP::atom) |
| CentroidOfRefined (IMP::core) | EventException (IMP) | MergeTreeBuilder (IMP::multifit) | RecursiveStates (IMP::domino) | TempDir (IMP.test) |
| Chain (IMP::atom) | EventPairsOptimizerState (IMP::container) | Metadata (IMP.pmi.metadata) | RefCountChecker (IMP.test) | TempResidue (IMP.pmi.topology) |
| ChainPDBSelector (IMP::atom) | EventQuadsOptimizerState (IMP::container) | Metric (IMP::statistics) | Reference (IMP::core) | TestCase (IMP.test) |
| Charged (IMP::atom) | EventSingletonsOptimizerState (IMP::container) | MetricClosePairsFinder (IMP::misc) | ReferenceFrame3D (IMP::algebra) | TextInput (IMP) |
| CHARMMAtom (IMP::atom) | EventTripletsOptimizerState (IMP::container) | MinimumPairRestraint (IMP::container) | ReferenceFrameGeometry (IMP::display) | TextOutput (IMP) |
| CHARMMAtomTopology (IMP::atom) | ExampleComplexRestraint (IMP::example) | MinimumPairScore (IMP::container) | ReferenceFrameToText (IMP.EMageFit.imp_general.io) | TextWriter (IMP::display) |
| CHARMMBondEndpoint (IMP::atom) | ExampleConstraint (IMP::example) | MinimumQuadRestraint (IMP::container) | RefinedPairsPairScore (IMP::core) | TIFFImageReaderWriter (IMP::em2d) |
| CHARMMBondParameters (IMP::atom) | ExampleDecorator (IMP::example) | MinimumQuadScore (IMP::container) | Refiner (IMP) | Timer (IMP) |
| CHARMMConnection (IMP::atom) | ExampleObject (IMP::example) | MinimumRestraint (IMP::core) | Reflection3D (IMP::algebra) | TopologyPlot (IMP.pmi.plotting.topology) |
| CHARMMDihedralParameters (IMP::atom) | ExamplePairScore (IMP::example) | MinimumRestraintScoreSubsetFilterTable (IMP::domino) | RegistrationResult (IMP::em2d) | TopologyReader (IMP.pmi.topology) |
| CharmmForceFieldRestraint (IMP.pmi.restraints.stereochemistry) | ExampleRestraint (IMP::example) | MinimumSingletonRestraint (IMP::container) | RelativePositionMover (IMP::em2d) | Torus3D (IMP::algebra) |
| CHARMMIdealResidueTopology (IMP::atom) | ExampleSingletonModifier (IMP::example) | MinimumSingletonScore (IMP::container) | RemoteError (IMP.parallel) | TotalScoreOutput (IMP.pmi.io) |
| CHARMMInternalCoordinate (IMP::atom) | ExampleSubsetFilterTable (IMP::example) | MinimumTripletRestraint (IMP::container) | RemoveRigidMotionOptimizerState (IMP::atom) | Transform (IMP::core) |
| CHARMMParameters (IMP::atom) | ExampleTemplateClassD (IMP::example) | MinimumTripletScore (IMP::container) | RemoveTranslationOptimizerState (IMP::atom) | Transformation2D (IMP::algebra) |
| CHARMMPatch (IMP::atom) | ExampleUnaryFunction (IMP::example) | Model (IMP) | ReplicaExchange (IMP.pmi.samplers) | Transformation3D (IMP::algebra) |
| CHARMMResidueTopology (IMP::atom) | Exception (IMP) | ModelException (IMP) | ReplicaExchange (IMP::mpi) | Transformation3DToText (IMP.EMageFit.imp_general.io) |
| CHARMMResidueTopologyBase (IMP::atom) | ExcludedVolumeRestraint (IMP::core) | ModellerRestraints (IMP.modeller) | ReplicaExchange0 (IMP.pmi.macros) | TransformationAndReflectionSymmetry (IMP::core) |
| CHARMMSegmentTopology (IMP::atom) | ExcludedVolumeSphere (IMP.pmi.restraints.stereochemistry) | ModelLoader (IMP.modeller) | Repository (IMP.pmi.metadata) | TransformationJoint (IMP::kinematics) |
| CHARMMStereochemistryRestraint (IMP::atom) | ExclusionSubsetFilterTable (IMP::domino) | ModelObject (IMP) | Representation (IMP.pmi.representation) | TransformationSymmetry (IMP::core) |
| CHARMMTopology (IMP::atom) | ExclusiveConsecutivePairContainer (IMP::container) | ModifierVisitor (IMP::core) | Representation (IMP::atom) | TransformationSymmetryMover (IMP::core) |
| ChecksScoreState (IMP::core) | ExclusiveConsecutivePairFilter (IMP::container) | Mol2Selector (IMP::atom) | RepulsiveDistancePairScore (IMP::isd) | TransformedDistancePairScore (IMP::core) |
| ChiFreeScore (IMP::saxs) | ExtendedGridIndexD (IMP::algebra) | MolCnSymmAxisDetector (IMP::cnmultifit) | Residue (IMP::atom) | TransformMover (IMP::pmi) |
| ChildrenRefiner (IMP::core) | ExternalBarrier (IMP.pmi.restraints.basic) | MolecularDynamics (IMP::atom) | ResidueAngleRestraint (IMP.pmi.restraints.stereochemistry) | Triangle3D (IMP::algebra) |
| ChiScore (IMP::saxs) | EzRestraint (IMP::atom) | MolecularDynamics (IMP.pmi.samplers) | ResidueBondRestraint (IMP.pmi.restraints.stereochemistry) | TriangleGeometry (IMP::display) |
| ChiScoreLog (IMP::saxs) |
| MolecularDynamics (IMP::isd) | ResidueDihedralRestraint (IMP.pmi.restraints.stereochemistry) | TripletConstraint (IMP::core) |
| ChiSquaredScore (IMP::em2d) | MolecularDynamicsMover (IMP::isd) | ResiduePairListParser (IMP.pmi.io.crosslink) | TripletContainer (IMP) |
| ChiSquareMetric (IMP::statistics) | FFTFitting (IMP::multifit) | Molecule (IMP::atom) | ResidueRotamer (IMP::rotamer) | TripletContainerAdaptor (IMP) |
| Citation (IMP.pmi.metadata) | FFTFittingOutput (IMP::multifit) | Molecule (IMP.pmi.topology) | ResidueType (IMP::atom) | TripletContainerSet (IMP::container) |
| CloseBipartitePairContainer (IMP::container) | FileLocation (IMP.pmi.metadata) | MonteCarlo (IMP.pmi.samplers) | ResidueTypePDBSelector (IMP::atom) | TripletContainerStatistics (IMP::container) |
| ClosedCubicSpline (IMP::core) | FilterGeometry (IMP::display) | MonteCarlo (IMP::core) | Resolution (IMP::pmi) | TripletModifier (IMP) |
| ClosePairContainer (IMP::container) | FilterOperator (IMP.pmi.io.crosslink) | MonteCarloMover (IMP::core) | Restraint (IMP) | TripletPredicate (IMP) |
| ClosePairsFinder (IMP::core) | Fine2DRegistrationRestraint (IMP::em2d) | MonteCarloMoverResult (IMP::core) | Restraint (IMP::saxs) | TripletRestraint (IMP::core) |
| ClosePairsPairScore (IMP::core) | FitParameters (IMP::saxs) | MonteCarloRelativeMoves (IMP.EMageFit.monte_carlo) | RestraintBase (IMP.pmi.restraints) | TripletsConstraint (IMP::container) |
| Clustering (IMP.pmi.analysis) | FitRestraint (IMP::em) | MonteCarloWithBasinHopping (IMP::core) | RestraintCache (IMP::domino) | TripletScore (IMP) |
| ClusterSet (IMP::em2d) | FittingSolutionRecord (IMP::multifit) | MonteCarloWithLocalOptimization (IMP::core) | RestraintGeometry (IMP::display) | TripletsOptimizerState (IMP::container) |
| CnSymmAxisDetector (IMP::cnmultifit) | FittingSolutions (IMP::em) | MoveStatisticsScoreState (IMP::core) | RestraintsAdaptor (IMP) | TripletsRestraint (IMP::container) |
| CoarseCC (IMP::em) | FittingStates (IMP::multifit) | MRCReaderWriter (IMP::em) | RestraintScoreSubsetFilterTable (IMP::domino) | TruncatedHarmonic (IMP::core) |
| CoarseCCatIntervals (IMP::em) | FixedFormatParser (IMP.pmi.io.crosslink) | MSConnectivityRestraint (IMP::core) | RestraintSet (IMP) | Typed (IMP::core) |
| CoarseConvolution (IMP::em) | FixedRefiner (IMP::core) | MultipleBinormalRestraint (IMP::modeller) | RestraintSetGeometry (IMP::display) | TypedPairScore (IMP::core) |
| CoinFlipPairPredicate (IMP::core) | FixedXYZ (IMP::algebra) | MultipleBinormalRestraint (IMP::core) | RestraintsScoringFunction (IMP::core) | TypeException (IMP) |
| CoinFlipQuadPredicate (IMP::core) | Flag (IMP) | MultiStateModel (IMP::multi_state) | ResultsDB (IMP.EMageFit.solutions_io) |
|
| CoinFlipSingletonPredicate (IMP::core) | FloatIndex (IMP) | MultiStateModelScore (IMP::multi_state) | RevoluteJoint (IMP::kinematics) |
| CoinFlipTripletPredicate (IMP::core) | FNormal (IMP::isd) | MultivariateFNormalSufficient (IMP::isd) | RevoluteJointMover (IMP::kinematics) | UnaryFunction (IMP) |
| CollisionCrossSection (IMP::em2d) | ForceFieldParameters (IMP::atom) | MyMetric (write_a_metric) | RigidBodiesImageFitRestraint (IMP::em2d) | UnaryFunctionEvaluate (IMP::score_functor) |
| Color (IMP::display) | ForceSwitch (IMP::atom) |
| RigidBodiesProfileHandler (IMP::saxs) | UnboundedGridRangeD (IMP::algebra) |
| ColorChange (IMP.pmi.tools) | FormFactorTable (IMP::saxs) | RigidBody (IMP::core) | Uncertainty (IMP::pmi) |
| Colored (IMP::display) | Fragment (IMP::atom) | NearestNeighborD (IMP::algebra) | RigidBodyAnglePairScore (IMP::core) | UncheckedWeakPointer (IMP) |
| CommandDispatcher (IMP) | FreelyJointedChain (IMP::misc) | NearestNeighborsClosePairsFinder (IMP::core) | RigidBodyDerivativeGeometry (IMP::core) | Undecorator (IMP) |
| CommonEndpointPairFilter (IMP::misc) | FretData (IMP::isd) | NeighborsTable (IMP::core) | RigidBodyDerivativesGeometry (IMP::core) | UniformBackboneSampler (IMP::kinematics) |
| ComparativeModelDataset (IMP.pmi.metadata) | FretRestraint (IMP::isd) | NestedRigidBodyStates (IMP::domino) | RigidBodyDiffusion (IMP::atom) | UniformPrior (IMP::isd) |
| CompareMultiStateModels (IMP::multi_state) | FusionRestraint (IMP.pmi.restraints.stereochemistry) | NetworkError (IMP.parallel) | RigidBodyDistancePairScore (IMP::core) | UnivariateFunction (IMP::isd) |
| ComplementarityRestraint (IMP::multifit) | FuzzyBoolean (IMP.pmi.restraints.proteomics) | NOERestraint (IMP::isd) | RigidBodyFrameGeometry (IMP::core) | UnorderedTypePairPredicate (IMP::core) |
| CompleteLinkage (IMP::em2d) | FuzzyRestraint (IMP.pmi.restraints.proteomics) | NoMoreSlavesError (IMP.parallel) | RigidBodyFramesGeometry (IMP::core) | UnorderedTypeQuadPredicate (IMP::core) |
| ComponentHeader (IMP::multifit) |
| NonAlternativePDBSelector (IMP::atom) | RigidBodyHierarchyGeometry (IMP::core) | UnorderedTypeSingletonPredicate (IMP::core) |
| CompositeJoint (IMP::kinematics) | NonCopyable (IMP) | RigidBodyMember (IMP::core) | UnorderedTypeTripletPredicate (IMP::core) |
| CompositeRestraint (IMP.pmi.restraints.proteomics) | Gaussian (IMP::core) | NonHydrogenMol2Selector (IMP::atom) | RigidBodyMover (IMP::core) | UsageException (IMP) |
| CompositeRestraint (IMP::pmi) | Gaussian3D (IMP::algebra) | NonHydrogenPDBSelector (IMP::atom) | RigidBodyMover (IMP::symmetry) |
|
| CompoundStates (IMP::domino) | GaussianAnchorEMRestraint (IMP::isd) | NonRigidMember (IMP::core) | RigidBodyStates (IMP::domino) |
| Cone3D (IMP::algebra) | GaussianEMRestraint (IMP.pmi.restraints.em) | NonWaterNonHydrogenPDBSelector (IMP::atom) | RigidBodyTorque (IMP::core) | Value (IMP) |
| Configuration (IMP) | GaussianEMRestraint (IMP::isd) | NonWaterPDBSelector (IMP::atom) | RigidBodyTunneler (IMP::core) | ValueException (IMP) |
| ConfigurationSet (IMP) | GaussianProcessInterpolation (IMP::isd) | NormalizedSphereDistancePairScore (IMP::core) | RigidBodyUmbrella (IMP::core) | Vector (IMP) |
| ConfigurationSetRMSDMetric (IMP::statistics) | GaussianProcessInterpolationRestraint (IMP::isd) | NormalMover (IMP::core) | RigidClosePairsFinder (IMP::core) | VectorBaseD (IMP::algebra) |
| ConfigurationSetXYZEmbedding (IMP::statistics) | GaussianRestraint (IMP::isd) | NotPDBSelector (IMP::atom) | RigidLeavesRefiner (IMP::multifit) | VectorD (IMP::algebra) |
| ConjugateGradients (IMP.pmi.samplers) | GeneralizedGuinierPorodFunction (IMP::isd) | NPDBSelector (IMP::atom) | RigidMember (IMP::core) | VectorDEmbedding (IMP::statistics) |
| ConjugateGradients (IMP::gsl) | GenericAttributeSingletonScore (IMP::core) | Nuisance (IMP::isd) | RMSDOutput (IMP.pmi.io) | VectorKDMetric (IMP::algebra) |
| ConjugateGradients (IMP::core) | GenericBoundingBox3DSingletonScore (IMP::core) |
| RootMetadata (IMP.pmi.metadata) | VelocityScalingOptimizerState (IMP::atom) |
| ConnectingPairContainer (IMP::container) | GenericDistanceToSingletonScore (IMP::core) | RotamerAngleTuple (IMP::rotamer) | VersionInfo (IMP) |
| ConnectivityCrossLinkMS (IMP.pmi.restraints.crosslinking) | GeometricHash (IMP::multifit) | Object (IMP) | RotamerCalculator (IMP::rotamer) | VolumeRestraint (IMP::core) |
| ConnectivityNetworkRestraint (IMP.pmi.restraints.proteomics) | GeometricPrimitiveD (IMP::algebra) | OpenCubicSpline (IMP::core) | RotamerLibrary (IMP::rotamer) | Voxel (IMP::em) |
| ConnectivityRestraint (IMP.pmi.restraints.proteomics) | Geometry (IMP::display) | OpenCubicSpline (IMP::score_functor) | Rotation2D (IMP::algebra) |
|
| ConnectivityRestraint (IMP.pmi.restraints.stereochemistry) | GeometryProcessor (IMP::display) | Optimizer (IMP) | Rotation3D (IMP::algebra) |
| ConnectivityRestraint (IMP::core) | GeometrySet (IMP::display) | OptimizerState (IMP) | RRT (IMP::kinematics) | WarningContext (IMP) |
| ConnollySurfacePoint (IMP::algebra) | GetModelDensity (IMP.pmi.analysis) | OptionParser (IMP) | RRT::RRTNode (IMP::kinematics) | WaterPDBSelector (IMP::atom) |
| ConsecutivePairContainer (IMP::container) | GetRMSD (IMP.pmi.analysis) | Order (IMP::domino) | RunInTempDir (IMP.test) | WeakPointer (IMP) |
| ConsecutivePairFilter (IMP::container) | GridClosePairsFinder (IMP::core) | OrderedDefaultDict (IMP.pmi.tools) |
| Weight (IMP::isd) |
| ConstantPairPredicate (IMP::core) | GridD (IMP::algebra) | OrderedTypePairPredicate (IMP::core) | WeightedDerivativesToRefined (IMP::core) |
| ConstantQuadPredicate (IMP::core) | GridIndexD (IMP::algebra) | OrderedTypeQuadPredicate (IMP::core) | SameResiduePairFilter (IMP::atom) | WeightedExcludedVolumeRestraint (IMP::multifit) |
| ConstantRestraint (IMP::core) | GridStates (IMP::em2d) | OrderedTypeSingletonPredicate (IMP::core) | SampleAssignmentContainer (IMP::domino) | WeightedFitParameters (IMP::saxs) |
| ConstantSingletonPredicate (IMP::core) | GSLOptimizer (IMP::gsl) | OrderedTypeTripletPredicate (IMP::core) | SampledDensityMap (IMP::em) | WeightedProfileFitter (IMP::saxs) |
| ConstantTripletPredicate (IMP::core) |
| OrientedSoap (IMP::score_functor) | Sampler (IMP) | WeightedSphereDistancePairScore (IMP::core) |
| Constraint (IMP) | OrientedSoapPairScore (IMP::atom) | SaveLink (IMP::rmf) | WeightedSum (IMP::core) |
| ConstVector (IMP) | Harmonic (IMP::core) | OrPDBSelector (IMP::atom) | SaveOptimizerState (IMP::rmf) | WeightedSumOfExponential (IMP::core) |
| Container (IMP) | Harmonic (IMP::score_functor) | Output (IMP.pmi.output) | SaveToConfigurationSetOptimizerState (IMP) | WeightMover (IMP::isd) |
| Context (IMP.parallel) | HarmonicDistancePairScore (IMP::core) |
| SAXSISDRestraint (IMP.pmi.restraints.saxs) | WeightRestraint (IMP::isd) |
| Copy (IMP::atom) | HarmonicLowerBound (IMP::core) | SAXSMultiStateModelScore (IMP::multi_state) | WeightRestraint (IMP.pmi.restraints.parameters) |
| Cosine (IMP::core) | HarmonicLowerBound (IMP::score_functor) | PackedAssignmentContainer (IMP::domino) | SAXSRestraint (IMP.pmi.restraints.saxs) | WeightScore (IMP::score_functor) |
| CoulombPairScore (IMP::atom) | HarmonicSphereDistancePairScore (IMP::core) | PairConstraint (IMP::core) | Scale (IMP::isd) | WormLikeChain (IMP::misc) |
| Covariance1DFunction (IMP::isd) | HarmonicSurfaceDepthPairScore (IMP::core) | PairContainer (IMP) | ScopedAddCacheAttribute (IMP) | WriteAssignmentContainer (IMP::domino) |
| Cover (IMP::core) | HarmonicSurfaceDistancePairScore (IMP::core) | PairContainerAdaptor (IMP) | ScopedSetAttribute (IMP) | WriteHDF5AssignmentContainer (IMP::domino) |
| CoverBond (IMP::atom) | HarmonicSurfaceHeightPairScore (IMP::core) | PairContainerSet (IMP::container) | Score (IMP::score_functor) | WriteOptimizerState (IMP::display) |
| CoverRefined (IMP::core) | HarmonicUpperBound (IMP::core) | PairContainerStatistics (IMP::container) | ScoreAccumulator (IMP) | WritePDBOptimizerState (IMP::atom) |
| CPDBSelector (IMP::atom) | HarmonicUpperBound (IMP::score_functor) | PairGeometry (IMP::display) | ScoreFunction (IMP::em2d) | Writer (IMP::display) |
| CreateLogContext (IMP) | HarmonicUpperBoundSphereDiameterPairScore (IMP::core) | PairListSubsetFilterTable (IMP::domino) | ScoreState (IMP) | WriterAdaptor (IMP::display) |
| CrossCorrelationRestraint (IMP.pmi.restraints.em) | HarmonicUpperBoundSphereDistancePairScore (IMP::core) | PairModifier (IMP) | ScoreUnaryFunction (IMP::score_functor) | WriteRestraintScoresOptimizerState (IMP::core) |
| CrossLinkData (IMP::isd) | HarmonicWell (IMP::core) | PairPredicate (IMP) | ScoringFunction (IMP) |
|
| CrossLinkDataBaseFromStructure (IMP.pmi.io.crosslink) | HasHigherCCC (IMP::em2d) | PairRestraint (IMP::core) | ScoringFunctionAdaptor (IMP) |
| CrossLinkDataBaseKeywordsConverter (IMP.pmi.io.crosslink) | HasLowerScore (IMP::em2d) | PairsConstraint (IMP::container) | SecondaryStructure (IMP.pmi.restraints.stereochemistry) | Xlink (IMP.EMageFit.buildxlinks) |
| CrossLinkingMassSpectrometryRestraint (IMP.pmi.restraints.crosslinking) | HeapAssignmentContainer (IMP::domino) | PairScore (IMP) | SecondaryStructureResidue (IMP::atom) | XlinksDict (IMP.EMageFit.buildxlinks) |
| CrossLinkMS (IMP.pmi.nonmantained) | HeapRecord (IMP.EMageFit.solutions_io) | PairsGeometry (IMP::display) | Segment3D (IMP::algebra) | XLTable (IMP.pmi.io.xltable) |
| CrossLinkMSRestraint (IMP::isd) | HelixRestraint (IMP.pmi.restraints.stereochemistry) | PairsOptimizerState (IMP::container) | SegmentationParameters (IMP::em2d) | XorPDBSelector (IMP::atom) |
| CrossLinkTable (IMP.pmi.analysis) | HelixRestraint (IMP::atom) | PairsRestraint (IMP::container) | SegmentGeometry (IMP::display) | XplorReaderWriter (IMP::em) |
| CustomXYZR (IMP::misc) | HierarchiesGeometry (IMP::atom) | ParabolicFit2D (IMP::algebra) | Segments (IMP.pmi.tools) | XYZ (IMP::core) |
| CvEstimator (IMP.isd.TuneRex) | Hierarchy (IMP::core) | Particle (IMP) | Selection (IMP::atom) | XYZDerivativeGeometry (IMP::core) |
| CXMSDataset (IMP.pmi.metadata) | Hierarchy (IMP::atom) | ParticleAdaptor (IMP) | SelectionGeometry (IMP::atom) | XYZDerivativesGeometry (IMP::core) |
| Cylinder3D (IMP::algebra) | HierarchyCounter (IMP::core) | ParticleEmbedding (IMP::statistics) | Sequences (IMP.pmi.topology) | XYZR (IMP::core) |
| CylinderGeometry (IMP::display) | HierarchyDatabase (IMP.pmi.tools) | ParticleIndexAdaptor (IMP) | SerialMover (IMP::core) | XYZRGeometry (IMP::core) |
| CylinderRestraint (IMP.pmi.restraints.basic) | HierarchyGeometry (IMP::atom) | ParticleIndexesAdaptor (IMP) | SetCheckState (IMP) | XYZRsGeometry (IMP::core) |
| CysteineCrossLinkData (IMP::isd) | HierarchyLoadLink (IMP::rmf) | ParticleIndexPairsAdaptor (IMP) | SetLogState (IMP) | XYZStates (IMP::domino) |
| CysteineCrossLinkRestraint (IMP::isd) | HierarchySaveLink (IMP::rmf) | ParticleInputs (IMP) | SetLogTarget (IMP) |
|
|
| HierarchyTraits (IMP::core) | ParticleOutputs (IMP) | SetNumberOfThreads (IMP) |
| HierarchyVisitor (IMP::core) | ParticlesAdaptor (IMP::domino) | SettingsData (IMP::multifit) | piecewise_linear_distribution (IMP) |
| Database2 (IMP.EMageFit.database) | HighDensityEmbedding (IMP::em) | ParticlesDummyRestraint (IMP::em2d) | SetupConnectivityNetworkRestraint (IMP.pmi.restraints.proteomics) |
|
| DatabaseLocation (IMP.pmi.metadata) | HistogramD (IMP::statistics) | ParticleStates (IMP::domino) | SetupMembraneRestraint (IMP.pmi.restraints.proteomics) |
| DataObject (IMP::core) | History (IMP.isd.History) | ParticleStatesTable (IMP::domino) | SGEPESlaveArray (IMP.parallel) | sfo_common (IMP.isd.shared_functions) |
| DataPointsAssignment (IMP::multifit) | HybridMonteCarlo (IMP::isd) | PartitionalClustering (IMP::statistics) | SGEQsubSlaveArray (IMP.parallel) |
|
| Dataset (IMP.pmi.metadata) | HydrogenPDBSelector (IMP::atom) | PartitionalClusteringWithCenter (IMP::statistics) | Shift (IMP::score_functor) |
| DecayPairContainerOptimizerState (IMP::misc) |
| PathLocalPlanner (IMP::kinematics) | Showable (IMP) | vonMises (IMP::isd) |
| | | |
| Image (IMP::em2d) | | | |
| | | | |
