IMP.pmi.analysis.GetRMSD Class Reference

This object can be added to output_objects in (for example in the ReplicaExchange0 macro). More...

Inherits object.

Detailed Description

This object can be added to output_objects in (for example in the ReplicaExchange0 macro).

It will load a frame from an rmf file and compute the rmsd of a hierarchy with respect to that reference structure. The output can be parsed from the stat.*.out files.

Note

This class is only available in Python.

Definition at line 985 of file pmi/Analysis.py.

Public Member Functions
def	__init__
	Constructor. More...

Constructor & Destructor Documentation

def IMP.pmi.analysis.GetRMSD.__init__	(		self,
			hier,
			rmf_file_name,
			rmf_frame_index,
			rmf_state_index,
			label
	)

Constructor.

Parameters

hier	hierarchy of the structure
rmf_file_name	path to the rmf file containing the reference structure
rmf_frame_index	the index of the frame containing the reference structure in the rmf file
voxel	rmf_state_index the index of the state containing the reference structure in the rmf file
label	label that will be used when parsing the stat file

Definition at line 992 of file pmi/Analysis.py.

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The documentation for this class was generated from the following file:

• pmi/Analysis.py