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IMP Reference Guide
2.7.0
The Integrative Modeling Platform
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Modeller-style multiple binormal (phi/psi) restraint. More...
#include <IMP/modeller/MultipleBinormalRestraint.h>
Inheritance diagram for IMP::modeller::MultipleBinormalRestraint:Modeller-style multiple binormal (phi/psi) restraint.
This implements a multiple binormal restraint on the two dihedral angles between the two quads of Particles passed to the restraint, by implementing equation A.77 in the Modeller manual. The two angles are typically the phi and psi dihedrals of a residue.
Definition at line 33 of file modeller/MultipleBinormalRestraint.h.
Public Member Functions | |
| MultipleBinormalRestraint (Model *m, const ParticleIndexQuad &q1, const ParticleIndexQuad &q2) | |
| Create the multiple binormal restraint. More... | |
| void | add_term (const BinormalTerm &term) |
| Add a single BinormalTerm to the restraint. More... | |
| virtual IMP::ModelObjectsTemp | do_get_inputs () const |
| virtual std::string | get_type_name () const |
| virtual ::IMP::VersionInfo | get_version_info () const |
| Get information about the module and version of the object. More... | |
| virtual double | unprotected_evaluate (IMP::DerivativeAccumulator *accum) const |
| Public Member Functions inherited from IMP::Restraint | |
| Restraint (Model *m, std::string name) | |
| void | add_score_and_derivatives (ScoreAccumulator sa) const |
| Perform the actual restraint scoring. More... | |
| Restraint * | create_current_decomposition () const |
| Decompose this restraint into constituent terms for the current conf. More... | |
| Restraint * | create_decomposition () const |
| Decompose this restraint into constituent terms. More... | |
| virtual ScoringFunction * | create_scoring_function (double weight=1.0, double max=NO_MAX) const |
| Create a scoring function with only this restraint. More... | |
| virtual double | get_last_score () const |
| double | get_score () const |
| bool | get_was_good () const |
| void | set_weight (Float weight) |
| Float | get_weight () const |
| double | get_maximum_score () const |
| void | set_maximum_score (double s) |
| Public Member Functions inherited from IMP::ModelObject | |
| ModelObject (Model *m, std::string name) | |
| bool | get_has_dependencies () const |
| Return whether this object has dependencies computed. More... | |
| bool | get_has_required_score_states () const |
| Return whether score states are computed. More... | |
| ModelObjectsTemp | get_inputs () const |
| ModelObjectsTemps | get_interactions () const |
| Get the interacting sets induced by this ModelObject. More... | |
| Model * | get_model () const |
| ModelObjectsTemp | get_outputs () const |
| const ScoreStatesTemp & | get_required_score_states () const |
| Get the score states that are ancestors of this in the dependency graph. More... | |
| void | set_has_dependencies (bool tf) |
| Either invalidate the dependencies or ensure they are correct. More... | |
| void | set_has_required_score_states (bool tf) |
| Compute the required score states. More... | |
| Public Member Functions inherited from IMP::Object | |
| virtual void | clear_caches () |
| CheckLevel | get_check_level () const |
| LogLevel | get_log_level () const |
| void | set_check_level (CheckLevel l) |
| void | set_log_level (LogLevel l) |
| Set the logging level used in this object. More... | |
| void | set_was_used (bool tf) const |
| void | show (std::ostream &out=std::cout) const |
| const std::string & | get_name () const |
| void | set_name (std::string name) |
Additional Inherited Members | |
| Protected Member Functions inherited from IMP::Restraint | |
| virtual void | do_add_score_and_derivatives (ScoreAccumulator sa) const |
| A restraint should override this to compute the score and derivatives. More... | |
| virtual Restraints | do_create_current_decomposition () const |
| virtual Restraints | do_create_decomposition () const |
| ModelObjectsTemp | do_get_outputs () const |
| Protected Member Functions inherited from IMP::ModelObject | |
| virtual ModelObjectsTemps | do_get_interactions () const |
| virtual void | handle_set_has_required_score_states (bool) |
| Protected Member Functions inherited from IMP::Object | |
| Object (std::string name) | |
| Construct an object with the given name. More... | |
| virtual void | do_destroy () |
| IMP::modeller::MultipleBinormalRestraint::MultipleBinormalRestraint | ( | Model * | m, |
| const ParticleIndexQuad & | q1, | ||
| const ParticleIndexQuad & | q2 | ||
| ) |
Create the multiple binormal restraint.
After creating the restraint, call add_term one or more times to add BinormalTerms to the restraint.
| [in] | m | Model. |
| [in] | q1 | First quad of particles. |
| [in] | q2 | Second quad of particles. |
| void IMP::modeller::MultipleBinormalRestraint::add_term | ( | const BinormalTerm & | term | ) |
Add a single BinormalTerm to the restraint.
Definition at line 51 of file modeller/MultipleBinormalRestraint.h.
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virtual |
Get any Particle, Container or other ModelObjects read by this during evaluation. If you read everything in a container, you can just return that container.
Implements IMP::ModelObject.
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virtual |
Get information about the module and version of the object.
Reimplemented from IMP::Object.
Definition at line 56 of file modeller/MultipleBinormalRestraint.h.
