Kinematic structure over a protein, with backbone and side chain dihedrals. More...

Detailed Description

Kinematic structure over a protein, with backbone and side chain dihedrals.

Definition at line 58 of file ProteinKinematics.h.

Public Member Functions
	ProteinKinematics (atom::Hierarchy mhd, bool flexible_backbone=true, bool flexible_side_chains=false)
	Constructor with all phi/psi rotatable. More...

	ProteinKinematics (atom::Hierarchy mhd, const atom::Residues &flexible_residues, const std::vector< atom::Atoms > &dihedral_angles, atom::Atoms open_loop_bond_atoms=atom::Atoms(), bool flexible_backbone=true, bool flexible_side_chains=false)

DihedralAngleRevoluteJoints	get_joints ()

KinematicForest *	get_kinematic_forest ()

DihedralAngleRevoluteJoints	get_loop_joints ()

DihedralAngleRevoluteJoints	get_ordered_joints ()

double	get_phi (const atom::Residue r) const

double	get_psi (const atom::Residue r) const

core::RigidBodies	get_rigid_bodies ()

void	set_phi (const atom::Residue r, double angle)

void	set_psi (const atom::Residue r, double angle)

Constructor & Destructor Documentation

IMP::kinematics::ProteinKinematics::ProteinKinematics	(	atom::Hierarchy	mhd,
		bool	flexible_backbone = `true`,
		bool	flexible_side_chains = `false`
	)

Constructor with all phi/psi rotatable.

The documentation for this class was generated from the following file: