A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z

A

AlignmentClustering (IMP.multifit.cluster)

Diffusion (IMP::atom)

J

PrincipalComponentAnalysisD (IMP::algebra)

SlabWithToroidalPorePairScore (IMP::npctransport)

AlignSymmetric (IMP::cnmultifit)

Dihedral (IMP::atom)

PrismaticJoint (IMP::kinematics)

SlabWithToroidalPoreWireGeometry (IMP::npc)

AllBipartitePairContainer (IMP::container)

DihedralAngleRevoluteJoint (IMP::kinematics)

JaccardDistanceMatrix (IMP.pmi.io.crosslink)

ProbabilisticAnchorGraph (IMP::multifit)

SlabWithToroidalPoreWireGeometry (IMP::npctransport)

AllMol2Selector (IMP::atom)

DihedralMover (IMP::kinematics)

JaccardDistanceMatrix (IMP.pmi1.io.crosslink)

ProbabilisticSubsetFilterTable (IMP::domino)

Slice (IMP::domino)

AllPairContainer (IMP::container)

DihedralRestraint (IMP::core)

JeffreysPrior (IMP.pmi.restraints.parameters)

ProcessOutput (IMP.pmi.output)

SmoothingFunction (IMP::atom)

AllPDBSelector (IMP::atom)

DihedralSingletonScore (IMP::atom)

JeffreysPrior (IMP.pmi1.restraints.parameters)

ProcessOutput (IMP.pmi1.output)

Soap (IMP::score_functor)

AllSamePairPredicate (IMP::core)

Direction (IMP::core)

JeffreysRestraint (IMP::isd)

Profile (IMP::saxs)

SoapPairFilter (IMP::atom)

AllSameQuadPredicate (IMP::core)

DirectionalDOF (IMP::kinematics)

Joint (IMP::kinematics)

ProfileClustering (IMP::saxs)

SoftCylinderPairScore (IMP::misc)

AllSameSingletonPredicate (IMP::core)

DirectionAngle (IMP::core)

JPGImageReaderWriter (IMP::em2d)

ProfileFitter (IMP::saxs)

SoftSpherePairScore (IMP::core)

AllSameTripletPredicate (IMP::core)

DirectionMover (IMP::core)

K

Profiler (IMP::benchmark)

SoftSubSurfacePairScore (IMP::core)

AmbiguousCompositeRestraint (IMP.pmi.restraints.proteomics)

DirectorObjectChecker (IMP.test)

ProjectingOptions (IMP::em2d)

SoftSuperSurfacePairScore (IMP::core)

AmbiguousCompositeRestraint (IMP.pmi1.restraints.proteomics)

DiscreteSampler (IMP::domino)

KClosePairsPairScore (IMP::core)

ProjectingParameters (IMP::em2d)

SoftwareProvenance (IMP::core)

AmbiguousNOERestraint (IMP::isd)

DisjointSetsSubsetFilterTable (IMP::domino)

KernelParameters (IMP::em)

ProjectionFinder (IMP::em2d)

SolventAccessibleSurface (IMP::saxs)

AmbiguousRestraint (IMP::isd)

DistanceFilter (IMP::em2d)

Key (IMP)

ProjectionMask (IMP::em2d)

SparseGrid3D (IMP::algebra)

Analysis (IMP.isd.Analysis)

DistanceFilterTable (IMP::em2d)

KinematicForest (IMP::kinematics)

ProjectionParameters (IMP::em2d)

SparseGridStorageD (IMP::algebra)

AnalysisReplicaExchange (IMP.pmi.macros)

DistanceMask (IMP::em)

KinematicForestScoreState (IMP::kinematics)

ProjectionParametersScoreState (IMP::em2d)

SparseSymmetricPairMemoizer (IMP)

AnalysisReplicaExchange (IMP.pmi1.macros)

DistancePairScore (IMP::score_functor)

KinematicNode (IMP::kinematics)

ProjectionStates (IMP::em2d)

SparseUnboundedGrid3D (IMP::algebra)

AnalysisReplicaExchange0 (IMP.pmi.macros)

DistancePairScore (IMP::core)

KinkPairScore (IMP::spb)

ProteinChainRestraint (IMP::npc)

SparseUnboundedGridD (IMP::algebra)

AnalysisReplicaExchange0 (IMP.pmi1.macros)

DistancePairScoreWithCache (IMP::score_functor)

KMeans (IMP::kmeans)

ProteinContactRestraint (IMP::npc)

SphereD (IMP::algebra)

AnchorsData (IMP::multifit)

DistanceRestraint (IMP.pmi.restraints.basic)

L

ProteinKinematics (IMP::kinematics)

SphereDistance (IMP::score_functor)

AnchorToCylidnricalPorePairScore (IMP::npctransport)

DistanceRestraint (IMP.pmi1.restraints.basic)

ProteinLigandAtomPairScore (IMP::atom)

SphereDistancePairScore (IMP::core)

AndPDBSelector (IMP::atom)

DistanceRestraint (IMP::core)

LabelGeometry (IMP::display)

ProteinLigandRestraint (IMP::atom)

SphereDistanceToSingletonScore (IMP::core)

Angle (IMP::atom)

DistanceRMSDMetric (IMP::spb)

LangevinThermostatOptimizerState (IMP::atom)

ProteinProximityRestraint (IMP::npc)

SphereGeometry (IMP::display)

AngleRestraint (IMP::core)

DistanceTerminiRestraint (IMP::spb)

LateralSurfaceConstraint (IMP::core)

ProteinsAnchorsSamplingSpace (IMP::multifit)

SpherePatch3D (IMP::algebra)

AngleSingletonScore (IMP::atom)

DistanceToPointRestraint (IMP.pmi.restraints.basic)

LeavesRefiner (IMP::core)

ProteomicsData (IMP::multifit)

SphericalIndentSurfaceDepthPairScore (IMP::npc)

AngleTripletScore (IMP::core)

DistanceToPointRestraint (IMP.pmi1.restraints.basic)

LennardJones (IMP::atom)

ProteomicsEMAlignmentAtomic (IMP::multifit)

SphericalVector3D (IMP::algebra)

AngularVelocity (IMP::atom)

DistributePairsScoreState (IMP::container)

LennardJonesPairScore (IMP::atom)

ProtocolOutput (IMP.pmi.mmcif)

SpiderHeader (IMP::em)

ApplicationTestCase (IMP.test)

DistributeQuadsScoreState (IMP::container)

LessPairBySecond (IMP::em2d)

ProtocolOutput (IMP.pmi1.mmcif)

SpiderImageReaderWriter (IMP::em2d)

ArgumentParser (IMP)

DistributeSingletonsScoreState (IMP::container)

Line3D (IMP::algebra)

ProtocolOutput (IMP.pmi.output)

SpiderMapReaderWriter (IMP::em)

Array (IMP)

DistributeTripletsScoreState (IMP::container)

Linear (IMP::core)

ProtocolOutput (IMP.pmi1.output)

State (IMP::atom)

AssemblyHeader (IMP::multifit)

Distribution (IMP::saxs)

Linear1DFunction (IMP::isd)

Provenance (IMP::core)

State (IMP.pmi.topology)

AssemblySymmetryByDihedralRestraint (IMP::npc)

Distribution (IMP::isd)

LinearFit2D (IMP::algebra)

Provenanced (IMP::core)

StateAdaptor (IMP::misc)

AssemblySymmetryByDistanceRestraint (IMP::npc)

DockOrder (IMP.EMageFit.buildxlinks)

LinearInteraction (IMP::npctransport)

PseudoAtomicRestraint (IMP.pmi.restraints.stereochemistry)

StatHierarchyHandler (IMP.pmi1.output)

Assignment (IMP::domino)

DockRefFormatter (IMP.multifit.transforms)

LinearInteractionPairScore (IMP::npctransport)

PseudoAtomicRestraint (IMP.pmi1.restraints.stereochemistry)

StatHierarchyHandler (IMP.pmi.output)

AssignmentContainer (IMP::domino)

DOF (IMP::kinematics)

LinearLowerBound (IMP::score_functor)

PymolWriter (IMP::display)

Statistical (IMP::score_functor)

AssignmentsTable (IMP::domino)

DOFsSampler (IMP::kinematics)

LinearSoftSpherePairScore (IMP::npctransport)

PythonDirectedGraph (IMP)

StatisticalPairScore (IMP::core)

AsymUnit (IMP.pmi.mmcif)

DOFValues (IMP::kinematics)

LinearVelocity (IMP::atom)

PythonExampleConstraint (IMP.example)

Statistics (IMP.isd.Statistics)

AsymUnit (IMP.pmi1.mmcif)

Domain (IMP::atom)

LinearWellPairScore (IMP::npctransport)

PythonExamplePairScore (IMP.example)

Statistics (IMP::npctransport)

Atom (IMP::atom)

DominoModel (IMP.EMageFit.domino_model)

ListAssignmentContainer (IMP::domino)

PythonExampleRestraint (IMP.example)

SteepestDescent (IMP::core)

AtomicCrossLinkMSRestraint (IMP.pmi.restraints.crosslinking)

DominoSampler (IMP::domino)

ListAssignmentsTable (IMP::domino)

PythonExampleSingletonModifier (IMP.example)

StereochemistryPairFilter (IMP::atom)

AtomicCrossLinkMSRestraint (IMP.pmi1.restraints.crosslinking)

Dope (IMP::score_functor)

ListPairContainer (IMP::container)

PythonExampleUnaryFunction (IMP.example)

Stopwatch (IMP.pmi.tools)

AtomicCrossLinkMSRestraint (IMP::isd)

DopePairScore (IMP::atom)

ListQuadContainer (IMP::container)

Q

Stopwatch (IMP.pmi1.tools)

ATOMPDBSelector (IMP::atom)

DummyRestraint (IMP::em2d)

ListSingletonContainer (IMP::container)

StructureProvenance (IMP::core)

AtomType (IMP::atom)

DummyRestraint (IMP::multifit)

ListSubsetFilterTable (IMP::domino)

QuadConstraint (IMP::core)

StructureSource (IMP::atom)

AtomTypePDBSelector (IMP::atom)

DynamicListPairContainer (IMP::container)

ListTripletContainer (IMP::container)

QuadContainer (IMP)

StructureWarning (IMP.pmi)

AttributeDistancePairScore (IMP::spb)

DynamicListQuadContainer (IMP::container)

LoadLink (IMP::rmf)

QuadContainerAdaptor (IMP)

StudentTRestraint (IMP::isd)

AttributeOptimizer (IMP)

DynamicListSingletonContainer (IMP::container)

LocalPlanner (IMP::kinematics)

QuadContainerSet (IMP::container)

Subset (IMP::domino)

AttributeSingletonPredicate (IMP::core)

DynamicListTripletContainer (IMP::container)

LocalWorker (IMP.parallel)

QuadContainerStatistics (IMP::container)

SubsetFilter (IMP::domino)

AverageDistanceLinkage (IMP::em2d)

DynamicNearestNeighbor3D (IMP::algebra)

LogEmbeddingD (IMP::algebra)

QuadModifier (IMP)

SubsetFilterTable (IMP::domino)

B

E

LogHolder (IMP.isd.demux_trajs)

QuadPredicate (IMP)

SubsetMover (IMP::core)

LognormalAmbiguousRestraint (IMP::isd)

QuadraticClosePairsFinder (IMP::core)

Surface (IMP::core)

BackbonePDBSelector (IMP::atom)

EdgePairGeometry (IMP::core)

LogNormalMover (IMP::core)

QuadRestraint (IMP::core)

SurfaceDepthPairScore (IMP::score_functor)

BallMover (IMP::symmetry)

EdgePairsGeometry (IMP::core)

LognormalRestraint (IMP::isd)

QuadsConstraint (IMP::container)

SurfaceDepthPairScore (IMP::core)

BallMover (IMP::core)

ElasticNetworkRestraint (IMP.pmi.restraints.stereochemistry)

LogPairScore (IMP::misc)

QuadScore (IMP)

SurfaceDistancePairScore (IMP::core)

BerendsenThermostatOptimizerState (IMP::atom)

ElasticNetworkRestraint (IMP.pmi1.restraints.stereochemistry)

LogWrapper (IMP::isd)

QuadsOptimizerState (IMP::container)

SurfaceDistancePairScore (IMP::score_functor)

BinormalTerm (IMP::core)

ElectronMicroscopy2D (IMP.pmi.restraints.em2d)

LoopStatistical (IMP::score_functor)

QuadsRestraint (IMP::container)

SurfaceGeometry (IMP::core)

BipartitePairsStatisticsOptimizerState (IMP::npctransport)

ElectronMicroscopy2D (IMP.pmi1.restraints.em2d)

LoopStatisticalPairScore (IMP::atom)

QuasiNewton (IMP::gsl)

SurfaceGeometryConstraint (IMP::core)

BiStableDistanceRestraint (IMP.pmi.restraints.basic)

ElectronMicroscopy2D_FFT (IMP.pmi.restraints.em2d)

LowestRefinedPairScore (IMP::misc)

R

SurfaceHeightPairScore (IMP::core)

BiStableDistanceRestraint (IMP.pmi1.restraints.basic)

ElectronMicroscopy2D_FFT (IMP.pmi1.restraints.em2d)

LRUCache (IMP)

SurfaceHeightPairScore (IMP::score_functor)

BivariateFunction (IMP::isd)

ElementTable (IMP::atom)

M

RadialDistributionFunction (IMP::saxs)

SurfaceMeshGeometry (IMP::display)

BodyStatisticsOptimizerState (IMP::npctransport)

Ellipsoid3D (IMP::algebra)

RadiusDependentDistanceMask (IMP::em)

SurfaceMover (IMP::core)

Bond (IMP::atom)

EllipsoidGeometry (IMP::display)

Manager (IMP.parallel)

RadiusOfGyrationRestraint (IMP::saxs)

SurfacesGeometry

ForceFieldParameters::Bond (IMP::atom)

EM2DRestraint (IMP::spb)

ManagerCommunicator (IMP.parallel.manager_communicator)

RadiusOfGyrationRestraint (IMP::multifit)

SurfaceShellDensityMap (IMP::em)

BondAngleRevoluteJoint (IMP::kinematics)

Em2DRestraint (IMP::em2d)

MapCrossLinkDataBaseOnStructure (IMP.pmi.io.crosslink)

RAII (IMP)

SurfaceSymmetryConstraint (IMP::core)

Bonded (IMP::atom)

Em2DRestraintParameters (IMP::em2d)

MapCrossLinkDataBaseOnStructure (IMP.pmi1.io.crosslink)

RangeViewAssignmentContainer (IMP::domino)

SurfaceTetheredChain (IMP::core)

BondedPairFilter (IMP::atom)

EM2DScore (IMP::em2d)

MapDistanceTransform (IMP::em)

RatioVolatilityScore (IMP::saxs)

Switching (IMP::isd)

BondEndpointsRefiner (IMP::atom)

Embedding (IMP::statistics)

MapReaderWriter (IMP::em)

ReadAssignmentContainer (IMP::domino)

Symmetric (IMP::pmi1)

BondGeometry (IMP::atom)

EMReaderWriter (IMP::em)

MarginalHBondRestraint (IMP::isd)

ReadHDF5AssignmentContainer (IMP::domino)

Symmetric (IMP::pmi)

BondGraph (IMP::atom)

Ensemble (IMP::multifit)

MarginalNOERestraint (IMP::isd)

RecursiveAssignmentsTable (IMP::domino)

SymmetryRestraint (IMP.pmi1.restraints.stereochemistry)

BondPairContainer (IMP::atom)

EnsembleGenerator (IMP::multi_state)

MasksManager (IMP::em2d)

RecursivePartitionalClusteringEmbedding (IMP::statistics)

SymmetryRestraint (IMP.pmi.restraints.stereochemistry)

BondsGeometry (IMP::atom)

Entity (IMP.pmi.mmcif)

Mass (IMP::atom)

RecursivePartitionalClusteringMetric (IMP::statistics)

System (IMP.pmi.topology)

BondSingletonScore (IMP::atom)

Entity (IMP.pmi1.mmcif)

MatchTemplateResult (IMP::em2d)

RecursiveStates (IMP::domino)

T

BoundedGridRangeD (IMP::algebra)

Entry (IMP.isd.Entry)

MaxVectorKDMetric (IMP::algebra)

RefCountChecker (IMP.test)

BoundingBoxD (IMP::algebra)

EnvelopeFitRestraint (IMP::em)

MCCGSampler (IMP::core)

Reference (IMP::core)

TableRefiner (IMP::core)

BoundingBoxGeometry (IMP::display)

EnvelopePenetrationRestraint (IMP::em)

MeanAbsoluteDifference (IMP::em2d)

ReferenceFrame3D (IMP::algebra)

TALOSReader (IMP.isd.TALOSReader)

BoxedMover (IMP::spb)

EnvelopeScore (IMP::em)

MembraneExclusionRestraint (IMP.pmi.restraints.npc)

ReferenceFrameGeometry (IMP::display)

TALOSRestraint (IMP::isd)

BoxSweepClosePairsFinder (IMP::core)

EqualitySubsetFilterTable (IMP::domino)

MembraneExclusionRestraint (IMP.pmi1.restraints.npc)

ReferenceFrameToText (IMP.EMageFit.imp_general.io)

TAMDCentroid (IMP::atom)

BranchAndBoundAssignmentsTable (IMP::domino)

EquivalenceAndExclusionSubsetFilterTable (IMP::domino)

MembraneExclusionRestraint (IMP::npc)

RefinedPairsPairScore (IMP::core)

TAMDParticle (IMP::atom)

BranchAndBoundSampler (IMP::domino)

EquivalenceSubsetFilterTable (IMP::domino)

MembraneRestraint (IMP.pmi.restraints.basic)

Refiner (IMP)

TempResidue (IMP.pmi.topology)

BrownianDynamics (IMP::atom)

Error (IMP.parallel)

MembraneRestraint (IMP::pmi)

Reflection3D (IMP::algebra)

TestCase (IMP.test)

BrownianDynamicsTAMD (IMP::atom)

EuclideanMetric (IMP::statistics)

MembraneRestraint (IMP::pmi1)

RegistrationResult (IMP::em2d)

TextInput (IMP)

BrownianDynamicsTAMDWithSlabSupport (IMP::npctransport)

EuclideanVectorKDMetric (IMP::algebra)

MembraneSurfaceLocationConditionalRestraint (IMP.pmi.restraints.npc)

RelativePositionMover (IMP::em2d)

TextOutput (IMP)

BuildModel (IMP.pmi1.macros)

LinearInteractionPairScore::EvaluationCache (IMP::npctransport)

MembraneSurfaceLocationConditionalRestraint (IMP.pmi1.restraints.npc)

RelaxingSpring (IMP::npctransport)

TextWriter (IMP::display)

BuildModel1 (IMP.pmi1.macros)

EvaluationState (IMP)

MembraneSurfaceLocationConditionalRestraint (IMP::npc)

RemoteError (IMP.parallel)

ThreeToOneConverter (IMP.pmi1.tools)

BuildSystem (IMP.pmi.macros)

EventException (IMP)

MembraneSurfaceLocationRestraint (IMP.pmi.restraints.npc)

RemoveRigidMotionOptimizerState (IMP::atom)

TIFFImageReaderWriter (IMP::em2d)

C

EventPairsOptimizerState (IMP::container)

MembraneSurfaceLocationRestraint (IMP.pmi1.restraints.npc)

RemoveTranslationOptimizerState (IMP::atom)

TiltSingletonScore (IMP::spb)

EventQuadsOptimizerState (IMP::container)

MembraneSurfaceLocationRestraint (IMP::npc)

ReplicaExchange (IMP.pmi.samplers)

TopologyPlot (IMP.pmi.plotting.topology)

CAAngleRestraint (IMP::atom)

EventSingletonsOptimizerState (IMP::container)

Memoizer (IMP)

ReplicaExchange (IMP.pmi1.samplers)

TopologyPlot (IMP.pmi1.plotting.topology)

CADihedralRestraint (IMP::atom)

EventTripletsOptimizerState (IMP::container)

MergeTreeBuilder (IMP::multifit)

ReplicaExchange (IMP::mpi)

TopologyReader (IMP.pmi1.topology)

CAlphaPDBSelector (IMP::atom)

ExampleComplexRestraint (IMP::example)

Metric (IMP::statistics)

ReplicaExchange (IMP.pmi.macros)

TopologyReader (IMP.pmi.topology)

CappedAssignmentContainer (IMP::domino)

ExampleConstraint (IMP::example)

MetricClosePairsFinder (IMP::misc)

ReplicaExchange0 (IMP.pmi1.macros)

ToroidalPoreSurfaceDepthPairScore (IMP::npc)

CBetaPDBSelector (IMP::atom)

ExampleDecorator (IMP::example)

MinimumPairRestraint (IMP::container)

Representation (IMP.pmi1.representation)

Torus3D (IMP::algebra)

CCDLoopClosure (IMP::kinematics)

ExampleObject (IMP::example)

MinimumPairScore (IMP::container)

Representation (IMP::atom)

TotalScoreOutput (IMP.pmi.io)

CellMover (IMP::spb)

ExamplePairScore (IMP::example)

MinimumQuadRestraint (IMP::container)

RepulsiveDistancePairScore (IMP::isd)

TotalScoreOutput (IMP.pmi1.io)

CenterOfMass (IMP::atom)

ExampleRestraint (IMP::example)

MinimumQuadScore (IMP::container)

Residue (IMP::atom)

Transform (IMP::core)

Centroid (IMP::core)

ExampleSingletonModifier (IMP::example)

MinimumRestraint (IMP::core)

ResidueAlphabet (IMP.pmi.alphabets)

Transformation2D (IMP::algebra)

CentroidOfRefined (IMP::core)

ExampleSubsetFilterTable (IMP::example)

MinimumRestraintScoreSubsetFilterTable (IMP::domino)

ResidueAngleRestraint (IMP.pmi.restraints.stereochemistry)

Transformation3D (IMP::algebra)

Chain (IMP::atom)

ExampleTemplateClassD (IMP::example)

MinimumSingletonRestraint (IMP::container)

ResidueAngleRestraint (IMP.pmi1.restraints.stereochemistry)

Transformation3DToText (IMP.EMageFit.imp_general.io)

ChainPDBSelector (IMP::atom)

ExampleUnaryFunction (IMP::example)

MinimumSingletonScore (IMP::container)

ResidueBondRestraint (IMP.pmi.restraints.stereochemistry)

TransformationAndReflectionSymmetry (IMP::core)

ChainStatisticsOptimizerState (IMP::npctransport)

Exception (IMP)

MinimumSphereDistancePairScore (IMP::npc)

ResidueBondRestraint (IMP.pmi1.restraints.stereochemistry)

TransformationJoint (IMP::kinematics)

ChainType (IMP::atom)

ExcludedVolumeRestraint (IMP::core)

MinimumTripletRestraint (IMP::container)

ResidueDihedralRestraint (IMP.pmi.restraints.stereochemistry)

TransformationSymmetry (IMP::spb)

Charged (IMP::atom)

ExcludedVolumeSphere (IMP.pmi.restraints.stereochemistry)

MinimumTripletScore (IMP::container)

ResidueDihedralRestraint (IMP.pmi1.restraints.stereochemistry)

TransformationSymmetry (IMP::core)

CHARMMAtom (IMP::atom)

ExcludedVolumeSphere (IMP.pmi1.restraints.stereochemistry)

MissingFileWarning (IMP.pmi)

ResiduePairListParser (IMP.pmi.io.crosslink)

TransformationSymmetryMover (IMP::core)

CHARMMAtomTopology (IMP::atom)

ExcludeZRangeSingletonScore (IMP::npctransport)

Model (IMP)

ResiduePairListParser (IMP.pmi1.io.crosslink)

TransformedDistancePairScore (IMP::core)

CHARMMBondEndpoint (IMP::atom)

ExclusionSubsetFilterTable (IMP::domino)

ModelException (IMP)

ResidueProteinProximityRestraint (IMP.pmi.restraints.basic)

TransformMover (IMP::pmi)

CHARMMBondParameters (IMP::atom)

ExclusiveConsecutivePairContainer (IMP::container)

ModellerRestraints (IMP.modeller)

ResidueProteinProximityRestraint (IMP::isd)

TransformMover (IMP::pmi1)

CHARMMConnection (IMP::atom)

ExclusiveConsecutivePairFilter (IMP::container)

ModelLoader (IMP.modeller)

ResidueRotamer (IMP::rotamer)

Transporting (IMP::npctransport)

CHARMMDihedralParameters (IMP::atom)

ExtendedGridIndexD (IMP::algebra)

ModelObject (IMP)

ResidueType (IMP::atom)

Triangle3D (IMP::algebra)

CharmmForceFieldRestraint (IMP.pmi.restraints.stereochemistry)

ExternalBarrier (IMP.pmi.restraints.basic)

ModifierVisitor (IMP::core)

ResidueTypePDBSelector (IMP::atom)

TriangleGeometry (IMP::display)

CharmmForceFieldRestraint (IMP.pmi1.restraints.stereochemistry)

ExternalBarrier (IMP.pmi1.restraints.basic)

Mol2Selector (IMP::atom)

Resolution (IMP::pmi)

TripletConstraint (IMP::core)

CHARMMIdealResidueTopology (IMP::atom)

EzRestraint (IMP::atom)

MolCnSymmAxisDetector (IMP::cnmultifit)

Resolution (IMP::pmi1)

TripletContainer (IMP)

CHARMMInternalCoordinate (IMP::atom)

F

MolecularDynamics (IMP::atom)

Restraint (IMP)

TripletContainerAdaptor (IMP)

CHARMMParameters (IMP::atom)

MolecularDynamics (IMP.pmi.samplers)

Restraint (IMP::saxs)

TripletContainerSet (IMP::container)

CHARMMPatch (IMP::atom)

FFTFitting (IMP::multifit)

MolecularDynamics (IMP.pmi1.samplers)

RestraintBase (IMP.pmi1.restraints)

TripletContainerStatistics (IMP::container)

CHARMMResidueTopology (IMP::atom)

FFTFittingOutput (IMP::multifit)

MolecularDynamics (IMP::isd)

RestraintCache (IMP::domino)

TripletModifier (IMP)

CHARMMResidueTopologyBase (IMP::atom)

FGChain (IMP::npctransport)

MolecularDynamicsMover (IMP::isd)

RestraintGeometry (IMP::display)

TripletPredicate (IMP)

CHARMMSegmentTopology (IMP::atom)

FibrilSampler (IMP::kinematics)

MolecularDynamicsWithWte (IMP::spb)

RestraintInfo (IMP)

TripletRestraint (IMP::core)

CHARMMStereochemistryRestraint (IMP::atom)

FilterGeometry (IMP::display)

Molecule (IMP::atom)

RestraintsAdaptor (IMP)

TripletsConstraint (IMP::container)

CHARMMTopology (IMP::atom)

FilterOperator (IMP.pmi.io.crosslink)

Molecule (IMP.pmi.topology)

RestraintScoreSubsetFilterTable (IMP::domino)

TripletScore (IMP)

ChecksScoreState (IMP::core)

FilterOperator (IMP.pmi1.io.crosslink)

MonteCarlo (IMP.pmi.samplers)

RestraintSet (IMP)

TripletsOptimizerState (IMP::container)

ChiFreeScore (IMP::saxs)

FilterProvenance (IMP::core)

MonteCarlo (IMP.pmi1.samplers)

RestraintSetGeometry (IMP::display)

TripletsRestraint (IMP::container)

ChildrenRefiner (IMP::core)

FitParameters (IMP::saxs)

MonteCarlo (IMP::core)

RestraintsScoringFunction (IMP::core)

TruncatedHarmonic (IMP::core)

ChimeraFormatter (IMP.multifit.transforms)

FitRestraint (IMP::em)

MonteCarloMover (IMP::core)

ResultsDB (IMP.EMageFit.solutions_io)

TwoStateGoModelRestraint (IMP::spb)

ChiScore (IMP::saxs)

FitRestraintBayesEM3D (IMP::em)

MonteCarloMoverResult (IMP::core)

RevoluteJoint (IMP::kinematics)

Typed (IMP::core)

ChiScoreLog (IMP::saxs)

FittingSolutionRecord (IMP::multifit)

MonteCarloRelativeMoves (IMP.EMageFit.monte_carlo)

RevoluteJointMover (IMP::kinematics)

TypedPairScore (IMP::core)

ChiSquaredScore (IMP::em2d)

FittingSolutions (IMP::em)

MonteCarloWithBasinHopping (IMP::core)

RigidBodiesImageFitRestraint (IMP::em2d)

TypedSitesGeometry (IMP::npctransport)

ChiSquareMetric (IMP::spb)

FittingStates (IMP::multifit)

MonteCarloWithLocalOptimization (IMP::core)

RigidBodiesProfileHandler (IMP::saxs)

TypeException (IMP)

ChiSquareMetric (IMP::statistics)

FixedFormatParser (IMP.pmi.io.crosslink)

MonteCarloWithWte (IMP::spb)

RigidBody (IMP::core)

U

CloseBipartitePairContainer (IMP::container)

FixedFormatParser (IMP.pmi1.io.crosslink)

MoveStatisticsScoreState (IMP::core)

RigidBodyAnglePairScore (IMP::core)

ClosedCubicSpline (IMP::core)

FixedRefiner (IMP::core)

MRCReaderWriter (IMP::em)

RigidBodyDerivativeGeometry (IMP::core)

UnaryFunction (IMP)

ClosePairContainer (IMP::container)

FixedXYZ (IMP::algebra)

MSConnectivityRestraint (IMP::core)

RigidBodyDerivativesGeometry (IMP::core)

UnaryFunctionEvaluate (IMP::score_functor)

ClosePairsFinder (IMP::core)

Flag (IMP)

MultipleBinormalRestraint (IMP::core)

RigidBodyDiffusion (IMP::atom)

UnboundedGridRangeD (IMP::algebra)

ClosePairsPairScore (IMP::core)

FloatIndex (IMP)

MultiStateModel (IMP::multi_state)

RigidBodyDistancePairScore (IMP::core)

Uncertainty (IMP::pmi1)

Cluster (IMP.pmi.output)

FNormal (IMP::isd)

MultiStateModelScore (IMP::multi_state)

RigidBodyFrameGeometry (IMP::core)

Uncertainty (IMP::pmi)

Cluster (IMP.pmi1.output)

ForceFieldParameters (IMP::atom)

MultivariateFNormalSufficient (IMP::isd)

RigidBodyFramesGeometry (IMP::core)

UncheckedWeakPointer (IMP)

Clustering (IMP.pmi.analysis)

ForceSwitch (IMP::atom)

MyMetric (write_a_metric)

RigidBodyHierarchyGeometry (IMP::core)

Undecorator (IMP)

Clustering (IMP.pmi1.analysis)

FormFactorTable (IMP::saxs)

N

RigidBodyMember (IMP::core)

UniformBackboneSampler (IMP::kinematics)

ClusterProvenance (IMP::core)

Fragment (IMP::atom)

RigidBodyMover (IMP::symmetry)

UniformBoundedRestraint (IMP::spb)

ClusterSet (IMP::em2d)

FreelyJointedChain (IMP::misc)

NearestNeighborD (IMP::algebra)

RigidBodyMover (IMP::core)

UniformPrior (IMP::isd)

CnSymmAxisDetector (IMP::cnmultifit)

FretData (IMP::isd)

NearestNeighborsClosePairsFinder (IMP::core)

RigidBodyNewMover (IMP::spb)

UnitSimplexBaseD (IMP::algebra)

CoarseCCatIntervals (IMP::em)

FretRestraint (IMP::isd)

NeighborsTable (IMP::core)

RigidBodyPackingScore (IMP::spb)

UnitSimplexD (IMP::algebra)

CoarseConvolution (IMP::em)

FStudentT (IMP::isd)

NestedRigidBodyStates (IMP::domino)

RigidBodyStates (IMP::domino)

UnitSimplexD<-1 > (IMP::algebra)

CoinFlipPairPredicate (IMP::core)

FunctorLinearInteractionPairScore (IMP::npctransport)

NetworkError (IMP.parallel)

RigidBodyTorque (IMP::core)

UnivariateFunction (IMP::isd)

CoinFlipQuadPredicate (IMP::core)

FunctorLinearSoftSpherePairScore (IMP::npctransport)

NOERestraint (IMP::isd)

RigidBodyTunneler (IMP::core)

UnorderedTypePairPredicate (IMP::core)

CoinFlipSingletonPredicate (IMP::core)

FusionRestraint (IMP.pmi.restraints.stereochemistry)

NoMoreWorkersError (IMP.parallel)

RigidBodyUmbrella (IMP::core)

UnorderedTypeQuadPredicate (IMP::core)

CoinFlipTripletPredicate (IMP::core)

FusionRestraint (IMP.pmi1.restraints.stereochemistry)

NonAlternativePDBSelector (IMP::atom)

RigidClosePairsFinder (IMP::core)

UnorderedTypeSingletonPredicate (IMP::core)

CollisionCrossSection (IMP::em2d)

FuzzyBoolean (IMP.pmi.restraints.proteomics)

NonCopyable (IMP)

RigidLeavesRefiner (IMP::multifit)

UnorderedTypeTripletPredicate (IMP::core)

Color (IMP::display)

FuzzyBoolean (IMP.pmi1.restraints.proteomics)

NonHydrogenMol2Selector (IMP::atom)

RigidMember (IMP::core)

UsageException (IMP)

ColorChange (IMP.pmi.tools)

FuzzyRestraint (IMP.pmi.restraints.proteomics)

NonHydrogenPDBSelector (IMP::atom)

RMFHierarchyHandler (IMP.pmi1.output)

V

ColorChange (IMP.pmi1.tools)

FuzzyRestraint (IMP.pmi1.restraints.proteomics)

NonRigidMember (IMP::core)

RMFHierarchyHandler (IMP.pmi.output)

Colored (IMP::display)

G

NonWaterNonHydrogenPDBSelector (IMP::atom)

RMSD (IMP.pmi1.analysis)

Value (IMP)

CombineProvenance (IMP::core)

NonWaterPDBSelector (IMP::atom)

RMSD (IMP.pmi.analysis)

ValueException (IMP)

CommandDispatcher (IMP)

GammaPrior (IMP::isd)

NormalizedSphereDistancePairScore (IMP::core)

RMSDMetric (IMP::spb)

Vector (IMP)

CommonEndpointPairFilter (IMP::misc)

Gaussian (IMP::spb)

NormalMover (IMP::core)

RMSDOutput (IMP.pmi1.io)

VectorBaseD (IMP::algebra)

CompareMultiStateModels (IMP::multi_state)

Gaussian (IMP::core)

NormalSigmaPCRestraint (IMP::isd)

RotamerAngleTuple (IMP::rotamer)

VectorD (IMP::algebra)

ComplementarityRestraint (IMP::multifit)

Gaussian3D (IMP::algebra)

NotPDBSelector (IMP::atom)

RotamerCalculator (IMP::rotamer)

VectorDEmbedding (IMP::statistics)

CompleteLinkage (IMP::em2d)

GaussianAnchorEMRestraint (IMP::isd)

NPDBSelector (IMP::atom)

RotamerLibrary (IMP::rotamer)

VectorKDMetric (IMP::algebra)

ComponentHeader (IMP::multifit)

GaussianEMRestraint (IMP::bayesianem)

Nuisance (IMP::isd)

Rotation2D (IMP::algebra)

VelocityScalingOptimizerState (IMP::atom)

CompositeJoint (IMP::kinematics)

GaussianEMRestraint (IMP.pmi.restraints.em)

NuisanceRangeModifier (IMP::spb)

Rotation3D (IMP::algebra)

VersionInfo (IMP)

CompositeRestraint (IMP.pmi.restraints.proteomics)

GaussianEMRestraint (IMP.pmi1.restraints.em)

O

RRT (IMP::kinematics)

VolumeRestraint (IMP::core)

CompositeRestraint (IMP.pmi1.restraints.proteomics)

GaussianEMRestraint (IMP::isd)

RRT::RRTNode (IMP::kinematics)

Voxel (IMP::em)

CompositeRestraint (IMP::npc)

GaussianEMRestraintWrapper (IMP.bayesianem.restraint)

Object (IMP)

S

W

CompositeRestraint (IMP::pmi)

GaussianProcessInterpolation (IMP::isd)

OneDimensionalDistribution (IMP::isd)

CompositeRestraint (IMP::pmi1)

GaussianProcessInterpolationRestraint (IMP::isd)

OneDimensionalSufficientDistribution (IMP::isd)

SameParticlePairFilter (IMP::spb)

WarningContext (IMP)

CompoundStates (IMP::domino)

GaussianRestraint (IMP::isd)

OpenCubicSpline (IMP::score_functor)

SameResiduePairFilter (IMP::atom)

WaterPDBSelector (IMP::atom)

Cone3D (IMP::algebra)

GeneralizedGuinierPorodFunction (IMP::isd)

OpenCubicSpline (IMP::core)

SameRigidBodyPairFilter (IMP::spb)

WeakPointer (IMP)

Configuration (IMP)

GenericAttributeSingletonScore (IMP::core)

Optimizer (IMP)

SampleAssignmentContainer (IMP::domino)

Weight (IMP::isd)

ConfigurationSet (IMP)

GenericBoundingBox3DSingletonScore (IMP::core)

OptimizerState (IMP)

SampledDensityMap (IMP::em)

WeightedDerivativesToRefined (IMP::core)

ConfigurationSetRMSDMetric (IMP::statistics)

GenericBoundingSphere3DSingletonScore (IMP::core)

Order (IMP::domino)

SampleProvenance (IMP::core)

WeightedExcludedVolumeRestraint (IMP::multifit)

ConfigurationSetXYZEmbedding (IMP::statistics)

GenericDistanceToSingletonScore (IMP::core)

OrderedDefaultDict (IMP.pmi.tools)

Sampler (IMP)

WeightedFitParameters (IMP::saxs)

ConjugateGradients (IMP.pmi.samplers)

GeometricHash (IMP::multifit)

OrderedDefaultDict (IMP.pmi1.tools)

SaveLink (IMP::rmf)

WeightedProfileFitter (IMP::saxs)

ConjugateGradients (IMP.pmi1.samplers)

GeometricPrimitiveD (IMP::algebra)

OrderedTypePairPredicate (IMP::core)

SaveOptimizerState (IMP::rmf)

WeightedSphereDistancePairScore (IMP::core)

ConjugateGradients (IMP::gsl)

Geometry (IMP::display)

OrderedTypeQuadPredicate (IMP::core)

SaveToConfigurationSetOptimizerState (IMP)

WeightedSum (IMP::core)

ConjugateGradients (IMP::core)

GeometryProcessor (IMP::display)

OrderedTypeSingletonPredicate (IMP::core)

SAXSISDRestraint (IMP.pmi.restraints.saxs)

WeightedSumOfExponential (IMP::core)

ConnectingPairContainer (IMP::container)

GeometrySet (IMP::display)

OrderedTypeTripletPredicate (IMP::core)

SAXSISDRestraint (IMP.pmi1.restraints.saxs)

WeightMover (IMP::isd)

ConnectivityCrossLinkMS (IMP.pmi1.restraints.crosslinking)

GetModelDensity (IMP.pmi.analysis)

OrientedSoap (IMP::score_functor)

SAXSMultiCombinationScore (IMP::multi_state)

WeightRestraint (IMP.pmi.restraints.parameters)

ConnectivityNetworkRestraint (IMP.pmi.restraints.proteomics)

GetModelDensity (IMP.pmi1.analysis)

OrientedSoapPairScore (IMP::atom)

SAXSMultiStateModelScore (IMP::multi_state)

WeightRestraint (IMP.pmi1.restraints.parameters)

ConnectivityNetworkRestraint (IMP.pmi1.restraints.proteomics)

GetModelDensity (IMP.sampcon.precision_rmsd)

OrPDBSelector (IMP::atom)

SAXSRestraint (IMP.pmi.restraints.saxs)

WeightRestraint (IMP::isd)

ConnectivityRestraint (IMP.pmi.restraints.proteomics)

GlobalStatisticsOptimizerState (IMP::npctransport)

Output (IMP.pmi.output)

SAXSRestraint (IMP.pmi1.restraints.saxs)

WeightScore (IMP::score_functor)

ConnectivityRestraint (IMP.pmi.restraints.stereochemistry)

GMMParser (IMP.pmi.mmcif)

Output (IMP.pmi1.output)

Scale (IMP::isd)

Worker (IMP.parallel)

ConnectivityRestraint (IMP.pmi1.restraints.proteomics)

GoodScoringModelSelector (IMP.sampcon.good_scoring_model_selector)

OutputStatistics (IMP.pmi.output)

ScopedAddCacheAttribute (IMP)

WorkerArray (IMP.parallel)

ConnectivityRestraint (IMP.pmi1.restraints.stereochemistry)

GridClosePairsFinder (IMP::core)

OutputStatistics (IMP.pmi1.output)

ScopedSetAttribute (IMP)

WormLikeChain (IMP::misc)

ConnectivityRestraint (IMP::core)

GridD (IMP::algebra)

OverallPositionRestraint (IMP::npc)

Score (IMP::score_functor)

WriteAssignmentContainer (IMP::domino)

ConnollySurfacePoint (IMP::algebra)

GridIndexD (IMP::algebra)

P

ScoreAccumulator (IMP)

WriteHDF5AssignmentContainer (IMP::domino)

ConsecutivePairContainer (IMP::container)

GridStates (IMP::em2d)

ScoreFunction (IMP::em2d)

WriteOptimizerState (IMP::display)

ConsecutivePairFilter (IMP::container)

GSLOptimizer (IMP::gsl)

PackedAssignmentContainer (IMP::domino)

ScoreState (IMP)

WritePDBOptimizerState (IMP::atom)

ConstantPairPredicate (IMP::core)

H

PairConstraint (IMP::core)

ScoreUnaryFunction (IMP::score_functor)

Writer (IMP.mmcif.util)

ConstantQuadPredicate (IMP::core)

PairContainer (IMP)

ScoreWithCache (IMP::score_functor)

Writer (IMP::display)

ConstantRestraint (IMP::core)

Harmonic (IMP::score_functor)

PairContainerAdaptor (IMP)

Scoring (IMP::npctransport)

WriterAdaptor (IMP::display)

ConstantSingletonPredicate (IMP::core)

Harmonic (IMP::core)

PairContainerSet (IMP::container)

ScoringFunction (IMP)

WriteRestraintScoresOptimizerState (IMP::core)

ConstantTripletPredicate (IMP::core)

HarmonicDistancePairScore (IMP::core)

PairContainerStatistics (IMP::container)

ScoringFunctionAdaptor (IMP)

X

Constraint (IMP)

HarmonicLowerBound (IMP::score_functor)

PairGeometry (IMP::display)

ScriptProvenance (IMP::core)

ConstVector (IMP)

HarmonicLowerBound (IMP::core)

PairListSubsetFilterTable (IMP::domino)

SecondaryStructure (IMP.pmi1.restraints.stereochemistry)

XAxialPositionLowerRestraint (IMP::npc)

ContactMapMetric (IMP::spb)

HarmonicSphereDistancePairScore (IMP::core)

PairModifier (IMP)

SecondaryStructureResidue (IMP::atom)

XAxialPositionRestraint (IMP::npc)

Container (IMP)

HarmonicSpringSingletonScore (IMP::npctransport)

PairPredicate (IMP)

Segment3D (IMP::algebra)

XAxialPositionUpperRestraint (IMP::npc)

Context (IMP.parallel)

HarmonicSurfaceDepthPairScore (IMP::core)

PairRestraint (IMP::core)

SegmentationParameters (IMP::em2d)

Xlink (IMP.EMageFit.buildxlinks)

Copy (IMP::atom)

HarmonicSurfaceDistancePairScore (IMP::core)

PairsConstraint (IMP::container)

SegmentGeometry (IMP::display)

XlinksDict (IMP.EMageFit.buildxlinks)

Cosine (IMP::core)

HarmonicSurfaceHeightPairScore (IMP::core)

PairScore (IMP)

Segments (IMP.pmi.tools)

XLTable (IMP.pmi1.io.xltable)

CoulombPairScore (IMP::atom)

HarmonicUpperBound (IMP::score_functor)

PairsGeometry (IMP::display)

Segments (IMP.pmi1.tools)

XorPDBSelector (IMP::atom)

Covariance1DFunction (IMP::isd)

HarmonicUpperBound (IMP::core)

PairsOptimizerState (IMP::container)

Selection (IMP::atom)

XplorReaderWriter (IMP::em)

Cover (IMP::core)

HarmonicUpperBoundSphereDiameterPairScore (IMP::core)

PairsRestraint (IMP::container)

SelectionGeometry (IMP::atom)

XYRadialPositionLowerRestraint (IMP.pmi1.restraints.npc)

CoverBond (IMP::atom)

HarmonicUpperBoundSphereDistancePairScore (IMP::core)

ParabolicFit2D (IMP::algebra)

Sequences (IMP.pmi1.topology)

XYRadialPositionLowerRestraint (IMP.pmi.restraints.npc)

CoverRefined (IMP::core)

HarmonicWell (IMP::core)

ParameterWarning (IMP.pmi)

Sequences (IMP.pmi.topology)

XYRadialPositionLowerRestraint (IMP::npc)

CPDBSelector (IMP::atom)

HarmonicWellPairScore (IMP::npctransport)

Particle (IMP)

SerialMover (IMP::core)

XYRadialPositionRestraint (IMP.pmi1.restraints.npc)

CreateLogContext (IMP)

HasHigherCCC (IMP::em2d)

ParticleAdaptor (IMP)

SetCheckState (IMP)

XYRadialPositionRestraint (IMP.pmi.restraints.npc)

CrossCorrelationRestraint (IMP.pmi1.restraints.em)

HasLowerScore (IMP::em2d)

ParticleEmbedding (IMP::statistics)

SetLogState (IMP)

XYRadialPositionRestraint (IMP::npc)

CrossLinkData (IMP::isd)

HeapAssignmentContainer (IMP::domino)

ParticleFactory (IMP::npctransport)

SetLogTarget (IMP)

XYRadialPositionUpperRestraint (IMP.pmi1.restraints.npc)

CrossLinkDataBase (IMP.pmi.io.crosslink)

HeapRecord (IMP.EMageFit.solutions_io)

ParticleIndexAdaptor (IMP)

SetNumberOfThreads (IMP)

XYRadialPositionUpperRestraint (IMP::npc)

CrossLinkDataBaseFromStructure (IMP.pmi.io.crosslink)

HelixDecorator (IMP::spb)

ParticleIndexesAdaptor (IMP)

SettingsData (IMP::multifit)

XYRadialPositionUpperRestraint (IMP.pmi.restraints.npc)

CrossLinkDataBaseFromStructure (IMP.pmi1.io.crosslink)

HelixRestraint (IMP.pmi.restraints.stereochemistry)

ParticleIndexPairsAdaptor (IMP)

SetupConnectivityNetworkRestraint (IMP.pmi.restraints.proteomics)

XYZ (IMP::core)

CrossLinkDataBaseKeywordsConverter (IMP.pmi.io.crosslink)

HelixRestraint (IMP.pmi1.restraints.stereochemistry)

ParticleInputs (IMP)

SetupConnectivityNetworkRestraint (IMP.pmi1.restraints.proteomics)

XYZDerivativeGeometry (IMP::core)

CrossLinkDataBaseKeywordsConverter (IMP.pmi1.io.crosslink)

HelixRestraint (IMP::atom)

ParticleOutputs (IMP)

SetupMembraneRestraint (IMP.pmi1.restraints.proteomics)

XYZDerivativesGeometry (IMP::core)

CrossLinkingMassSpectrometryRestraint (IMP.pmi.restraints.crosslinking)

HierarchiesGeometry (IMP::atom)

ParticlesAdaptor (IMP::domino)

SGEPEWorkerArray (IMP.parallel)

XYZR (IMP::core)

CrossLinkingMassSpectrometryRestraint (IMP.pmi1.restraints.crosslinking)

Hierarchy (IMP::core)

ParticlesDummyRestraint (IMP::em2d)

SGEQsubWorkerArray (IMP.parallel)

XYZRGeometry (IMP::core)

CrossLinkMS (IMP.pmi1.nonmantained)

Hierarchy (IMP::atom)

ParticleStates (IMP::domino)

Shift (IMP::score_functor)

XYZRsGeometry (IMP::core)

CrossLinkMSRestraint (IMP::isd)

HierarchyCounter (IMP::core)

ParticleStatesTable (IMP::domino)

Showable (IMP)

XYZStates (IMP::domino)

CrossLinkRestraintSet (IMP::pmi)

HierarchyDatabase (IMP.pmi1.tools)

ParticleTransportStatisticsOptimizerState (IMP::npctransport)

SigmoidRestraintSphere (IMP::pmi1)

Y

CrossLinkTable (IMP.pmi.analysis)

HierarchyGeometry (IMP::atom)

PartitionalClustering (IMP::statistics)

SimpleAssignmentsTable (IMP::domino)

CrossLinkTable (IMP.pmi1.analysis)

HierarchyLoadLink (IMP::rmf)

PartitionalClusteringWithCenter (IMP::statistics)

SimpleLoadLink (IMP::rmf)

YAxialPositionLowerRestraint (IMP::npc)

CustomXYZR (IMP::misc)

HierarchySaveLink (IMP::rmf)

PathLocalPlanner (IMP::kinematics)

SimpleSaveLink (IMP::rmf)

YAxialPositionLowerRestraint (IMP.pmi.restraints.npc)

CvEstimator (IMP.isd.TuneRex)

HierarchyTraits (IMP::core)

PbcBoxedMover (IMP::spb)

Simplex (IMP::gsl)

YAxialPositionLowerRestraint (IMP.pmi1.restraints.npc)

Cylinder3D (IMP::algebra)

HierarchyVisitor (IMP::core)

PbcBoxedRigidBodyMover (IMP::spb)

SimulationData (IMP::npctransport)

YAxialPositionRestraint (IMP.pmi.restraints.npc)

CylinderGeometry (IMP::display)

HierarchyWithSitesLoadLink (IMP::npctransport)

PCAAligner (IMP::em)

Simulator (IMP::atom)

YAxialPositionRestraint (IMP::npc)

CylinderRestraint (IMP.pmi.restraints.basic)

HierarchyWithSitesSaveLink (IMP::npctransport)

PCAFitRestraint (IMP::em)

SingleLinkage (IMP::em2d)

YAxialPositionRestraint (IMP.pmi1.restraints.npc)

CylinderRestraint (IMP.pmi1.restraints.basic)

HighDensityEmbedding (IMP::em)

PCAFitRestraint (IMP::em2d)

SingletonConstraint (IMP::core)

YAxialPositionUpperRestraint (IMP::npc)

CysteineCrossLinkData (IMP::isd)

HistogramD (IMP::statistics)

PDBRecord (IMP::atom)

SingletonContainer (IMP)

YAxialPositionUpperRestraint (IMP.pmi.restraints.npc)

CysteineCrossLinkRestraint (IMP::isd)

History (IMP.isd.History)

PDBSelector (IMP::atom)

SingletonContainerAdaptor (IMP)

YAxialPositionUpperRestraint (IMP.pmi1.restraints.npc)

D

HybridMonteCarlo (IMP::isd)

PDBSequences (IMP.pmi.topology)

SingletonContainerSet (IMP::container)

Z

HydrogenPDBSelector (IMP::atom)

PenalizedComplexityPrior (IMP::isd)

SingletonContainerStatistics (IMP::container)

Database2 (IMP.EMageFit.database)

I

PerinuclearVolumeLocationRestraint (IMP::npc)

SingletonGeometry (IMP::display)

ZAxialPositionLowerRestraint (IMP.pmi.restraints.npc)

DataEntry (IMP.pmi.output)

PermutationStates (IMP::domino)

SingletonModifier (IMP)

ZAxialPositionLowerRestraint (IMP::npc)

DataEntry (IMP.pmi1.output)

Image (IMP::em2d)

Pipe (IMP.isd.utils)

SingletonPredicate (IMP)

ZAxialPositionLowerRestraint (IMP.pmi1.restraints.npc)

DataObject (IMP::core)

ImageHeader (IMP::em)

PivyWriter (IMP::display)

SingletonRestraint (IMP::core)

ZAxialPositionRestraint (IMP.pmi.restraints.npc)

DataPointsAssignment (IMP::multifit)

ImageReaderWriter (IMP::em2d)

Plane3D (IMP::algebra)

SingletonsConstraint (IMP::container)

ZAxialPositionRestraint (IMP::npc)

DecayPairContainerOptimizerState (IMP::misc)

IMPRestraints (IMP.modeller)

PlaneDihedralRestraint (IMP.pmi.restraints.stereochemistry)

SingletonScore (IMP)

ZAxialPositionRestraint (IMP.pmi1.restraints.npc)

Decorator (IMP)

ImproperSingletonScore (IMP::atom)

PlaneDihedralRestraint (IMP.pmi1.restraints.stereochemistry)

SingletonsGeometry (IMP::display)

ZAxialPositionUpperRestraint (IMP::npc)

DefaultEmbeddingD (IMP::algebra)

InBoundingBox3DSingletonPredicate (IMP::core)

PlaneGeometry (IMP::display)

SingletonsOptimizerState (IMP::container)

ZAxialPositionUpperRestraint (IMP.pmi1.restraints.npc)

DegreesOfFreedom (IMP.pmi.dof)

InContainerPairFilter (IMP::container)

PMIMoleculeHierarchy (IMP.pmi.topology)

SingletonsRestraint (IMP::container)

ZAxialPositionUpperRestraint (IMP.pmi.restraints.npc)

DeltaDistributionFunction (IMP::saxs)

InContainerQuadFilter (IMP::container)

PMIMoleculeHierarchy (IMP.pmi1.topology)

SingletonStatistical (IMP::score_functor)

ZBiasSingletonScore (IMP::npctransport)

Demuxer (IMP.isd.demux_trajs)

InContainerSingletonFilter (IMP::container)

Pointer (IMP)

SitesGeometry (IMP::npctransport)

g

DenseFloatLogGridKD (IMP::algebra)

InContainerTripletFilter (IMP::container)

PointerMember (IMP)

SitesPairScore (IMP::npctransport)

DenseGrid3D (IMP::algebra)

Index (IMP)

PointGeometry (IMP::display)

SitesPairScoreParameters (IMP::npctransport)

graphNode (IMP.spatiotemporal.graphNode)

DenseGridStorageD (IMP::algebra)

IndexException (IMP)

PointToSphereDistance (IMP::score_functor)

SkinSurfaceGeometry (IMP::display)

s

DenseIntLogGrid3D (IMP::algebra)

IndexStates (IMP::domino)

PolarResamplingParameters (IMP::em2d)

SlabWithCylindricalPore (IMP::npctransport)

DensityDataPoints (IMP::multifit)

IndexVector (IMP)

PolygonGeometry (IMP::display)

SlabWithCylindricalPorePairScore (IMP::npctransport)

sfo_common (IMP.isd.shared_functions)

A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z