|
| DensityFillingRestraint (IMP::em) | InitialDockingFromXlinks (IMP.EMageFit.buildxlinks) | PoreRadiusSingletonScore (IMP::npctransport) | SlabWithCylindricalPoreWireGeometry (IMP::npctransport) |
| DensityHeader (IMP::em) | InputAdaptor (IMP) | PoreSideVolumeLocationRestraint (IMP::npc) | SlabWithPore (IMP::npc) |
| AddBoolFlag (IMP) | DensityMap (IMP::em) | InternalCoordinatesConstraint (IMP::pmi1) | PPDBSelector (IMP::atom) | SlabWithPore (IMP::npctransport) |
| AddFloatFlag (IMP) | DependencyScoreState (IMP::domino) | InternalException (IMP) | Precision (IMP.pmi.analysis) | SlabWithSphericalIndent (IMP::npc) |
| AddIntFlag (IMP) | DerivativeAccumulator (IMP) | IntsOrder (IMP::em2d) | Precision (IMP.pmi1.analysis) | SlabWithSphericalIndentGeometry (IMP::npc) |
| AddScores (IMP::score_functor) | DerivativeCalculator (IMP::saxs) | IOException (IMP) | PredicatePairsRestraint (IMP::container) | SlabWithSphericalIndentMBMScore (IMP::npc) |
| AddStringFlag (IMP) | DerivativesFromRefined (IMP::core) | IsCollisionPairPredicate (IMP::core) | PredicateQuadsRestraint (IMP::container) | SlabWithToroidalPore (IMP::npctransport) |
| AdvancedFlag (IMP) | DerivativesToRefined (IMP::core) | ISDRestraint (IMP::spb) | PredicateSingletonScore (IMP::core) | SlabWithToroidalPore (IMP::npc) |
| Alignment (IMP.pmi.analysis) | DiameterRestraint (IMP::core) | ISDRestraint (IMP::isd) | PredicateSingletonsRestraint (IMP::container) | SlabWithToroidalPoreGoPairScore (IMP::npc) |
| Alignment (IMP.pmi1.analysis) | DiameterRgyrRestraint (IMP::spb) | IsosurfaceGeometry (IMP::display) | PredicateTripletsRestraint (IMP::container) | SlabWithToroidalPoreMBMScore (IMP::npc) |
| AlignmentClustering (IMP.multifit.cluster) | Diffusion (IMP::atom) |
| PrincipalComponentAnalysisD (IMP::algebra) | SlabWithToroidalPorePairScore (IMP::npctransport) |
| AlignSymmetric (IMP::cnmultifit) | Dihedral (IMP::atom) | PrismaticJoint (IMP::kinematics) | SlabWithToroidalPoreWireGeometry (IMP::npc) |
| AllBipartitePairContainer (IMP::container) | DihedralAngleRevoluteJoint (IMP::kinematics) | JaccardDistanceMatrix (IMP.pmi.io.crosslink) | ProbabilisticAnchorGraph (IMP::multifit) | SlabWithToroidalPoreWireGeometry (IMP::npctransport) |
| AllMol2Selector (IMP::atom) | DihedralMover (IMP::kinematics) | JaccardDistanceMatrix (IMP.pmi1.io.crosslink) | ProbabilisticSubsetFilterTable (IMP::domino) | Slice (IMP::domino) |
| AllPairContainer (IMP::container) | DihedralRestraint (IMP::core) | JeffreysPrior (IMP.pmi.restraints.parameters) | ProcessOutput (IMP.pmi.output) | SmoothingFunction (IMP::atom) |
| AllPDBSelector (IMP::atom) | DihedralSingletonScore (IMP::atom) | JeffreysPrior (IMP.pmi1.restraints.parameters) | ProcessOutput (IMP.pmi1.output) | Soap (IMP::score_functor) |
| AllSamePairPredicate (IMP::core) | Direction (IMP::core) | JeffreysRestraint (IMP::isd) | Profile (IMP::saxs) | SoapPairFilter (IMP::atom) |
| AllSameQuadPredicate (IMP::core) | DirectionalDOF (IMP::kinematics) | Joint (IMP::kinematics) | ProfileClustering (IMP::saxs) | SoftCylinderPairScore (IMP::misc) |
| AllSameSingletonPredicate (IMP::core) | DirectionAngle (IMP::core) | JPGImageReaderWriter (IMP::em2d) | ProfileFitter (IMP::saxs) | SoftSpherePairScore (IMP::core) |
| AllSameTripletPredicate (IMP::core) | DirectionMover (IMP::core) |
| Profiler (IMP::benchmark) | SoftSubSurfacePairScore (IMP::core) |
| AmbiguousCompositeRestraint (IMP.pmi.restraints.proteomics) | DirectorObjectChecker (IMP.test) | ProjectingOptions (IMP::em2d) | SoftSuperSurfacePairScore (IMP::core) |
| AmbiguousCompositeRestraint (IMP.pmi1.restraints.proteomics) | DiscreteSampler (IMP::domino) | KClosePairsPairScore (IMP::core) | ProjectingParameters (IMP::em2d) | SoftwareProvenance (IMP::core) |
| AmbiguousNOERestraint (IMP::isd) | DisjointSetsSubsetFilterTable (IMP::domino) | KernelParameters (IMP::em) | ProjectionFinder (IMP::em2d) | SolventAccessibleSurface (IMP::saxs) |
| AmbiguousRestraint (IMP::isd) | DistanceFilter (IMP::em2d) | Key (IMP) | ProjectionMask (IMP::em2d) | SparseGrid3D (IMP::algebra) |
| Analysis (IMP.isd.Analysis) | DistanceFilterTable (IMP::em2d) | KinematicForest (IMP::kinematics) | ProjectionParameters (IMP::em2d) | SparseGridStorageD (IMP::algebra) |
| AnalysisReplicaExchange (IMP.pmi.macros) | DistanceMask (IMP::em) | KinematicForestScoreState (IMP::kinematics) | ProjectionParametersScoreState (IMP::em2d) | SparseSymmetricPairMemoizer (IMP) |
| AnalysisReplicaExchange (IMP.pmi1.macros) | DistancePairScore (IMP::score_functor) | KinematicNode (IMP::kinematics) | ProjectionStates (IMP::em2d) | SparseUnboundedGrid3D (IMP::algebra) |
| AnalysisReplicaExchange0 (IMP.pmi.macros) | DistancePairScore (IMP::core) | KinkPairScore (IMP::spb) | ProteinChainRestraint (IMP::npc) | SparseUnboundedGridD (IMP::algebra) |
| AnalysisReplicaExchange0 (IMP.pmi1.macros) | DistancePairScoreWithCache (IMP::score_functor) | KMeans (IMP::kmeans) | ProteinContactRestraint (IMP::npc) | SphereD (IMP::algebra) |
| AnchorsData (IMP::multifit) | DistanceRestraint (IMP.pmi.restraints.basic) |
| ProteinKinematics (IMP::kinematics) | SphereDistance (IMP::score_functor) |
| AnchorToCylidnricalPorePairScore (IMP::npctransport) | DistanceRestraint (IMP.pmi1.restraints.basic) | ProteinLigandAtomPairScore (IMP::atom) | SphereDistancePairScore (IMP::core) |
| AndPDBSelector (IMP::atom) | DistanceRestraint (IMP::core) | LabelGeometry (IMP::display) | ProteinLigandRestraint (IMP::atom) | SphereDistanceToSingletonScore (IMP::core) |
| Angle (IMP::atom) | DistanceRMSDMetric (IMP::spb) | LangevinThermostatOptimizerState (IMP::atom) | ProteinProximityRestraint (IMP::npc) | SphereGeometry (IMP::display) |
| AngleRestraint (IMP::core) | DistanceTerminiRestraint (IMP::spb) | LateralSurfaceConstraint (IMP::core) | ProteinsAnchorsSamplingSpace (IMP::multifit) | SpherePatch3D (IMP::algebra) |
| AngleSingletonScore (IMP::atom) | DistanceToPointRestraint (IMP.pmi.restraints.basic) | LeavesRefiner (IMP::core) | ProteomicsData (IMP::multifit) | SphericalIndentSurfaceDepthPairScore (IMP::npc) |
| AngleTripletScore (IMP::core) | DistanceToPointRestraint (IMP.pmi1.restraints.basic) | LennardJones (IMP::atom) | ProteomicsEMAlignmentAtomic (IMP::multifit) | SphericalVector3D (IMP::algebra) |
| AngularVelocity (IMP::atom) | DistributePairsScoreState (IMP::container) | LennardJonesPairScore (IMP::atom) | ProtocolOutput (IMP.pmi.mmcif) | SpiderHeader (IMP::em) |
| ApplicationTestCase (IMP.test) | DistributeQuadsScoreState (IMP::container) | LessPairBySecond (IMP::em2d) | ProtocolOutput (IMP.pmi1.mmcif) | SpiderImageReaderWriter (IMP::em2d) |
| ArgumentParser (IMP) | DistributeSingletonsScoreState (IMP::container) | Line3D (IMP::algebra) | ProtocolOutput (IMP.pmi.output) | SpiderMapReaderWriter (IMP::em) |
| Array (IMP) | DistributeTripletsScoreState (IMP::container) | Linear (IMP::core) | ProtocolOutput (IMP.pmi1.output) | State (IMP::atom) |
| AssemblyHeader (IMP::multifit) | Distribution (IMP::saxs) | Linear1DFunction (IMP::isd) | Provenance (IMP::core) | State (IMP.pmi.topology) |
| AssemblySymmetryByDihedralRestraint (IMP::npc) | Distribution (IMP::isd) | LinearFit2D (IMP::algebra) | Provenanced (IMP::core) | StateAdaptor (IMP::misc) |
| AssemblySymmetryByDistanceRestraint (IMP::npc) | DockOrder (IMP.EMageFit.buildxlinks) | LinearInteraction (IMP::npctransport) | PseudoAtomicRestraint (IMP.pmi.restraints.stereochemistry) | StatHierarchyHandler (IMP.pmi1.output) |
| Assignment (IMP::domino) | DockRefFormatter (IMP.multifit.transforms) | LinearInteractionPairScore (IMP::npctransport) | PseudoAtomicRestraint (IMP.pmi1.restraints.stereochemistry) | StatHierarchyHandler (IMP.pmi.output) |
| AssignmentContainer (IMP::domino) | DOF (IMP::kinematics) | LinearLowerBound (IMP::score_functor) | PymolWriter (IMP::display) | Statistical (IMP::score_functor) |
| AssignmentsTable (IMP::domino) | DOFsSampler (IMP::kinematics) | LinearSoftSpherePairScore (IMP::npctransport) | PythonDirectedGraph (IMP) | StatisticalPairScore (IMP::core) |
| AsymUnit (IMP.pmi.mmcif) | DOFValues (IMP::kinematics) | LinearVelocity (IMP::atom) | PythonExampleConstraint (IMP.example) | Statistics (IMP.isd.Statistics) |
| AsymUnit (IMP.pmi1.mmcif) | Domain (IMP::atom) | LinearWellPairScore (IMP::npctransport) | PythonExamplePairScore (IMP.example) | Statistics (IMP::npctransport) |
| Atom (IMP::atom) | DominoModel (IMP.EMageFit.domino_model) | ListAssignmentContainer (IMP::domino) | PythonExampleRestraint (IMP.example) | SteepestDescent (IMP::core) |
| AtomicCrossLinkMSRestraint (IMP.pmi.restraints.crosslinking) | DominoSampler (IMP::domino) | ListAssignmentsTable (IMP::domino) | PythonExampleSingletonModifier (IMP.example) | StereochemistryPairFilter (IMP::atom) |
| AtomicCrossLinkMSRestraint (IMP.pmi1.restraints.crosslinking) | Dope (IMP::score_functor) | ListPairContainer (IMP::container) | PythonExampleUnaryFunction (IMP.example) | Stopwatch (IMP.pmi.tools) |
| AtomicCrossLinkMSRestraint (IMP::isd) | DopePairScore (IMP::atom) | ListQuadContainer (IMP::container) |
| Stopwatch (IMP.pmi1.tools) |
| ATOMPDBSelector (IMP::atom) | DummyRestraint (IMP::em2d) | ListSingletonContainer (IMP::container) | StructureProvenance (IMP::core) |
| AtomType (IMP::atom) | DummyRestraint (IMP::multifit) | ListSubsetFilterTable (IMP::domino) | QuadConstraint (IMP::core) | StructureSource (IMP::atom) |
| AtomTypePDBSelector (IMP::atom) | DynamicListPairContainer (IMP::container) | ListTripletContainer (IMP::container) | QuadContainer (IMP) | StructureWarning (IMP.pmi) |
| AttributeDistancePairScore (IMP::spb) | DynamicListQuadContainer (IMP::container) | LoadLink (IMP::rmf) | QuadContainerAdaptor (IMP) | StudentTRestraint (IMP::isd) |
| AttributeOptimizer (IMP) | DynamicListSingletonContainer (IMP::container) | LocalPlanner (IMP::kinematics) | QuadContainerSet (IMP::container) | Subset (IMP::domino) |
| AttributeSingletonPredicate (IMP::core) | DynamicListTripletContainer (IMP::container) | LocalWorker (IMP.parallel) | QuadContainerStatistics (IMP::container) | SubsetFilter (IMP::domino) |
| AverageDistanceLinkage (IMP::em2d) | DynamicNearestNeighbor3D (IMP::algebra) | LogEmbeddingD (IMP::algebra) | QuadModifier (IMP) | SubsetFilterTable (IMP::domino) |
|
|
| LogHolder (IMP.isd.demux_trajs) | QuadPredicate (IMP) | SubsetMover (IMP::core) |
| LognormalAmbiguousRestraint (IMP::isd) | QuadraticClosePairsFinder (IMP::core) | Surface (IMP::core) |
| BackbonePDBSelector (IMP::atom) | EdgePairGeometry (IMP::core) | LogNormalMover (IMP::core) | QuadRestraint (IMP::core) | SurfaceDepthPairScore (IMP::score_functor) |
| BallMover (IMP::symmetry) | EdgePairsGeometry (IMP::core) | LognormalRestraint (IMP::isd) | QuadsConstraint (IMP::container) | SurfaceDepthPairScore (IMP::core) |
| BallMover (IMP::core) | ElasticNetworkRestraint (IMP.pmi.restraints.stereochemistry) | LogPairScore (IMP::misc) | QuadScore (IMP) | SurfaceDistancePairScore (IMP::core) |
| BerendsenThermostatOptimizerState (IMP::atom) | ElasticNetworkRestraint (IMP.pmi1.restraints.stereochemistry) | LogWrapper (IMP::isd) | QuadsOptimizerState (IMP::container) | SurfaceDistancePairScore (IMP::score_functor) |
| BinormalTerm (IMP::core) | ElectronMicroscopy2D (IMP.pmi.restraints.em2d) | LoopStatistical (IMP::score_functor) | QuadsRestraint (IMP::container) | SurfaceGeometry (IMP::core) |
| BipartitePairsStatisticsOptimizerState (IMP::npctransport) | ElectronMicroscopy2D (IMP.pmi1.restraints.em2d) | LoopStatisticalPairScore (IMP::atom) | QuasiNewton (IMP::gsl) | SurfaceGeometryConstraint (IMP::core) |
| BiStableDistanceRestraint (IMP.pmi.restraints.basic) | ElectronMicroscopy2D_FFT (IMP.pmi.restraints.em2d) | LowestRefinedPairScore (IMP::misc) |
| SurfaceHeightPairScore (IMP::core) |
| BiStableDistanceRestraint (IMP.pmi1.restraints.basic) | ElectronMicroscopy2D_FFT (IMP.pmi1.restraints.em2d) | LRUCache (IMP) | SurfaceHeightPairScore (IMP::score_functor) |
| BivariateFunction (IMP::isd) | ElementTable (IMP::atom) |
| RadialDistributionFunction (IMP::saxs) | SurfaceMeshGeometry (IMP::display) |
| BodyStatisticsOptimizerState (IMP::npctransport) | Ellipsoid3D (IMP::algebra) | RadiusDependentDistanceMask (IMP::em) | SurfaceMover (IMP::core) |
| Bond (IMP::atom) | EllipsoidGeometry (IMP::display) | Manager (IMP.parallel) | RadiusOfGyrationRestraint (IMP::saxs) | SurfacesGeometry |
| ForceFieldParameters::Bond (IMP::atom) | EM2DRestraint (IMP::spb) | ManagerCommunicator (IMP.parallel.manager_communicator) | RadiusOfGyrationRestraint (IMP::multifit) | SurfaceShellDensityMap (IMP::em) |
| BondAngleRevoluteJoint (IMP::kinematics) | Em2DRestraint (IMP::em2d) | MapCrossLinkDataBaseOnStructure (IMP.pmi.io.crosslink) | RAII (IMP) | SurfaceSymmetryConstraint (IMP::core) |
| Bonded (IMP::atom) | Em2DRestraintParameters (IMP::em2d) | MapCrossLinkDataBaseOnStructure (IMP.pmi1.io.crosslink) | RangeViewAssignmentContainer (IMP::domino) | SurfaceTetheredChain (IMP::core) |
| BondedPairFilter (IMP::atom) | EM2DScore (IMP::em2d) | MapDistanceTransform (IMP::em) | RatioVolatilityScore (IMP::saxs) | Switching (IMP::isd) |
| BondEndpointsRefiner (IMP::atom) | Embedding (IMP::statistics) | MapReaderWriter (IMP::em) | ReadAssignmentContainer (IMP::domino) | Symmetric (IMP::pmi1) |
| BondGeometry (IMP::atom) | EMReaderWriter (IMP::em) | MarginalHBondRestraint (IMP::isd) | ReadHDF5AssignmentContainer (IMP::domino) | Symmetric (IMP::pmi) |
| BondGraph (IMP::atom) | Ensemble (IMP::multifit) | MarginalNOERestraint (IMP::isd) | RecursiveAssignmentsTable (IMP::domino) | SymmetryRestraint (IMP.pmi1.restraints.stereochemistry) |
| BondPairContainer (IMP::atom) | EnsembleGenerator (IMP::multi_state) | MasksManager (IMP::em2d) | RecursivePartitionalClusteringEmbedding (IMP::statistics) | SymmetryRestraint (IMP.pmi.restraints.stereochemistry) |
| BondsGeometry (IMP::atom) | Entity (IMP.pmi.mmcif) | Mass (IMP::atom) | RecursivePartitionalClusteringMetric (IMP::statistics) | System (IMP.pmi.topology) |
| BondSingletonScore (IMP::atom) | Entity (IMP.pmi1.mmcif) | MatchTemplateResult (IMP::em2d) | RecursiveStates (IMP::domino) |
|
| BoundedGridRangeD (IMP::algebra) | Entry (IMP.isd.Entry) | MaxVectorKDMetric (IMP::algebra) | RefCountChecker (IMP.test) |
| BoundingBoxD (IMP::algebra) | EnvelopeFitRestraint (IMP::em) | MCCGSampler (IMP::core) | Reference (IMP::core) | TableRefiner (IMP::core) |
| BoundingBoxGeometry (IMP::display) | EnvelopePenetrationRestraint (IMP::em) | MeanAbsoluteDifference (IMP::em2d) | ReferenceFrame3D (IMP::algebra) | TALOSReader (IMP.isd.TALOSReader) |
| BoxedMover (IMP::spb) | EnvelopeScore (IMP::em) | MembraneExclusionRestraint (IMP.pmi.restraints.npc) | ReferenceFrameGeometry (IMP::display) | TALOSRestraint (IMP::isd) |
| BoxSweepClosePairsFinder (IMP::core) | EqualitySubsetFilterTable (IMP::domino) | MembraneExclusionRestraint (IMP.pmi1.restraints.npc) | ReferenceFrameToText (IMP.EMageFit.imp_general.io) | TAMDCentroid (IMP::atom) |
| BranchAndBoundAssignmentsTable (IMP::domino) | EquivalenceAndExclusionSubsetFilterTable (IMP::domino) | MembraneExclusionRestraint (IMP::npc) | RefinedPairsPairScore (IMP::core) | TAMDParticle (IMP::atom) |
| BranchAndBoundSampler (IMP::domino) | EquivalenceSubsetFilterTable (IMP::domino) | MembraneRestraint (IMP.pmi.restraints.basic) | Refiner (IMP) | TempResidue (IMP.pmi.topology) |
| BrownianDynamics (IMP::atom) | Error (IMP.parallel) | MembraneRestraint (IMP::pmi) | Reflection3D (IMP::algebra) | TestCase (IMP.test) |
| BrownianDynamicsTAMD (IMP::atom) | EuclideanMetric (IMP::statistics) | MembraneRestraint (IMP::pmi1) | RegistrationResult (IMP::em2d) | TextInput (IMP) |
| BrownianDynamicsTAMDWithSlabSupport (IMP::npctransport) | EuclideanVectorKDMetric (IMP::algebra) | MembraneSurfaceLocationConditionalRestraint (IMP.pmi.restraints.npc) | RelativePositionMover (IMP::em2d) | TextOutput (IMP) |
| BuildModel (IMP.pmi1.macros) | LinearInteractionPairScore::EvaluationCache (IMP::npctransport) | MembraneSurfaceLocationConditionalRestraint (IMP.pmi1.restraints.npc) | RelaxingSpring (IMP::npctransport) | TextWriter (IMP::display) |
| BuildModel1 (IMP.pmi1.macros) | EvaluationState (IMP) | MembraneSurfaceLocationConditionalRestraint (IMP::npc) | RemoteError (IMP.parallel) | ThreeToOneConverter (IMP.pmi1.tools) |
| BuildSystem (IMP.pmi.macros) | EventException (IMP) | MembraneSurfaceLocationRestraint (IMP.pmi.restraints.npc) | RemoveRigidMotionOptimizerState (IMP::atom) | TIFFImageReaderWriter (IMP::em2d) |
|
| EventPairsOptimizerState (IMP::container) | MembraneSurfaceLocationRestraint (IMP.pmi1.restraints.npc) | RemoveTranslationOptimizerState (IMP::atom) | TiltSingletonScore (IMP::spb) |
| EventQuadsOptimizerState (IMP::container) | MembraneSurfaceLocationRestraint (IMP::npc) | ReplicaExchange (IMP.pmi.samplers) | TopologyPlot (IMP.pmi.plotting.topology) |
| CAAngleRestraint (IMP::atom) | EventSingletonsOptimizerState (IMP::container) | Memoizer (IMP) | ReplicaExchange (IMP.pmi1.samplers) | TopologyPlot (IMP.pmi1.plotting.topology) |
| CADihedralRestraint (IMP::atom) | EventTripletsOptimizerState (IMP::container) | MergeTreeBuilder (IMP::multifit) | ReplicaExchange (IMP::mpi) | TopologyReader (IMP.pmi1.topology) |
| CAlphaPDBSelector (IMP::atom) | ExampleComplexRestraint (IMP::example) | Metric (IMP::statistics) | ReplicaExchange (IMP.pmi.macros) | TopologyReader (IMP.pmi.topology) |
| CappedAssignmentContainer (IMP::domino) | ExampleConstraint (IMP::example) | MetricClosePairsFinder (IMP::misc) | ReplicaExchange0 (IMP.pmi1.macros) | ToroidalPoreSurfaceDepthPairScore (IMP::npc) |
| CBetaPDBSelector (IMP::atom) | ExampleDecorator (IMP::example) | MinimumPairRestraint (IMP::container) | Representation (IMP.pmi1.representation) | Torus3D (IMP::algebra) |
| CCDLoopClosure (IMP::kinematics) | ExampleObject (IMP::example) | MinimumPairScore (IMP::container) | Representation (IMP::atom) | TotalScoreOutput (IMP.pmi.io) |
| CellMover (IMP::spb) | ExamplePairScore (IMP::example) | MinimumQuadRestraint (IMP::container) | RepulsiveDistancePairScore (IMP::isd) | TotalScoreOutput (IMP.pmi1.io) |
| CenterOfMass (IMP::atom) | ExampleRestraint (IMP::example) | MinimumQuadScore (IMP::container) | Residue (IMP::atom) | Transform (IMP::core) |
| Centroid (IMP::core) | ExampleSingletonModifier (IMP::example) | MinimumRestraint (IMP::core) | ResidueAlphabet (IMP.pmi.alphabets) | Transformation2D (IMP::algebra) |
| CentroidOfRefined (IMP::core) | ExampleSubsetFilterTable (IMP::example) | MinimumRestraintScoreSubsetFilterTable (IMP::domino) | ResidueAngleRestraint (IMP.pmi.restraints.stereochemistry) | Transformation3D (IMP::algebra) |
| Chain (IMP::atom) | ExampleTemplateClassD (IMP::example) | MinimumSingletonRestraint (IMP::container) | ResidueAngleRestraint (IMP.pmi1.restraints.stereochemistry) | Transformation3DToText (IMP.EMageFit.imp_general.io) |
| ChainPDBSelector (IMP::atom) | ExampleUnaryFunction (IMP::example) | MinimumSingletonScore (IMP::container) | ResidueBondRestraint (IMP.pmi.restraints.stereochemistry) | TransformationAndReflectionSymmetry (IMP::core) |
| ChainStatisticsOptimizerState (IMP::npctransport) | Exception (IMP) | MinimumSphereDistancePairScore (IMP::npc) | ResidueBondRestraint (IMP.pmi1.restraints.stereochemistry) | TransformationJoint (IMP::kinematics) |
| ChainType (IMP::atom) | ExcludedVolumeRestraint (IMP::core) | MinimumTripletRestraint (IMP::container) | ResidueDihedralRestraint (IMP.pmi.restraints.stereochemistry) | TransformationSymmetry (IMP::spb) |
| Charged (IMP::atom) | ExcludedVolumeSphere (IMP.pmi.restraints.stereochemistry) | MinimumTripletScore (IMP::container) | ResidueDihedralRestraint (IMP.pmi1.restraints.stereochemistry) | TransformationSymmetry (IMP::core) |
| CHARMMAtom (IMP::atom) | ExcludedVolumeSphere (IMP.pmi1.restraints.stereochemistry) | MissingFileWarning (IMP.pmi) | ResiduePairListParser (IMP.pmi.io.crosslink) | TransformationSymmetryMover (IMP::core) |
| CHARMMAtomTopology (IMP::atom) | ExcludeZRangeSingletonScore (IMP::npctransport) | Model (IMP) | ResiduePairListParser (IMP.pmi1.io.crosslink) | TransformedDistancePairScore (IMP::core) |
| CHARMMBondEndpoint (IMP::atom) | ExclusionSubsetFilterTable (IMP::domino) | ModelException (IMP) | ResidueProteinProximityRestraint (IMP.pmi.restraints.basic) | TransformMover (IMP::pmi) |
| CHARMMBondParameters (IMP::atom) | ExclusiveConsecutivePairContainer (IMP::container) | ModellerRestraints (IMP.modeller) | ResidueProteinProximityRestraint (IMP::isd) | TransformMover (IMP::pmi1) |
| CHARMMConnection (IMP::atom) | ExclusiveConsecutivePairFilter (IMP::container) | ModelLoader (IMP.modeller) | ResidueRotamer (IMP::rotamer) | Transporting (IMP::npctransport) |
| CHARMMDihedralParameters (IMP::atom) | ExtendedGridIndexD (IMP::algebra) | ModelObject (IMP) | ResidueType (IMP::atom) | Triangle3D (IMP::algebra) |
| CharmmForceFieldRestraint (IMP.pmi.restraints.stereochemistry) | ExternalBarrier (IMP.pmi.restraints.basic) | ModifierVisitor (IMP::core) | ResidueTypePDBSelector (IMP::atom) | TriangleGeometry (IMP::display) |
| CharmmForceFieldRestraint (IMP.pmi1.restraints.stereochemistry) | ExternalBarrier (IMP.pmi1.restraints.basic) | Mol2Selector (IMP::atom) | Resolution (IMP::pmi) | TripletConstraint (IMP::core) |
| CHARMMIdealResidueTopology (IMP::atom) | EzRestraint (IMP::atom) | MolCnSymmAxisDetector (IMP::cnmultifit) | Resolution (IMP::pmi1) | TripletContainer (IMP) |
| CHARMMInternalCoordinate (IMP::atom) |
| MolecularDynamics (IMP::atom) | Restraint (IMP) | TripletContainerAdaptor (IMP) |
| CHARMMParameters (IMP::atom) | MolecularDynamics (IMP.pmi.samplers) | Restraint (IMP::saxs) | TripletContainerSet (IMP::container) |
| CHARMMPatch (IMP::atom) | FFTFitting (IMP::multifit) | MolecularDynamics (IMP.pmi1.samplers) | RestraintBase (IMP.pmi1.restraints) | TripletContainerStatistics (IMP::container) |
| CHARMMResidueTopology (IMP::atom) | FFTFittingOutput (IMP::multifit) | MolecularDynamics (IMP::isd) | RestraintCache (IMP::domino) | TripletModifier (IMP) |
| CHARMMResidueTopologyBase (IMP::atom) | FGChain (IMP::npctransport) | MolecularDynamicsMover (IMP::isd) | RestraintGeometry (IMP::display) | TripletPredicate (IMP) |
| CHARMMSegmentTopology (IMP::atom) | FibrilSampler (IMP::kinematics) | MolecularDynamicsWithWte (IMP::spb) | RestraintInfo (IMP) | TripletRestraint (IMP::core) |
| CHARMMStereochemistryRestraint (IMP::atom) | FilterGeometry (IMP::display) | Molecule (IMP::atom) | RestraintsAdaptor (IMP) | TripletsConstraint (IMP::container) |
| CHARMMTopology (IMP::atom) | FilterOperator (IMP.pmi.io.crosslink) | Molecule (IMP.pmi.topology) | RestraintScoreSubsetFilterTable (IMP::domino) | TripletScore (IMP) |
| ChecksScoreState (IMP::core) | FilterOperator (IMP.pmi1.io.crosslink) | MonteCarlo (IMP.pmi.samplers) | RestraintSet (IMP) | TripletsOptimizerState (IMP::container) |
| ChiFreeScore (IMP::saxs) | FilterProvenance (IMP::core) | MonteCarlo (IMP.pmi1.samplers) | RestraintSetGeometry (IMP::display) | TripletsRestraint (IMP::container) |
| ChildrenRefiner (IMP::core) | FitParameters (IMP::saxs) | MonteCarlo (IMP::core) | RestraintsScoringFunction (IMP::core) | TruncatedHarmonic (IMP::core) |
| ChimeraFormatter (IMP.multifit.transforms) | FitRestraint (IMP::em) | MonteCarloMover (IMP::core) | ResultsDB (IMP.EMageFit.solutions_io) | TwoStateGoModelRestraint (IMP::spb) |
| ChiScore (IMP::saxs) | FitRestraintBayesEM3D (IMP::em) | MonteCarloMoverResult (IMP::core) | RevoluteJoint (IMP::kinematics) | Typed (IMP::core) |
| ChiScoreLog (IMP::saxs) | FittingSolutionRecord (IMP::multifit) | MonteCarloRelativeMoves (IMP.EMageFit.monte_carlo) | RevoluteJointMover (IMP::kinematics) | TypedPairScore (IMP::core) |
| ChiSquaredScore (IMP::em2d) | FittingSolutions (IMP::em) | MonteCarloWithBasinHopping (IMP::core) | RigidBodiesImageFitRestraint (IMP::em2d) | TypedSitesGeometry (IMP::npctransport) |
| ChiSquareMetric (IMP::spb) | FittingStates (IMP::multifit) | MonteCarloWithLocalOptimization (IMP::core) | RigidBodiesProfileHandler (IMP::saxs) | TypeException (IMP) |
| ChiSquareMetric (IMP::statistics) | FixedFormatParser (IMP.pmi.io.crosslink) | MonteCarloWithWte (IMP::spb) | RigidBody (IMP::core) |
|
| CloseBipartitePairContainer (IMP::container) | FixedFormatParser (IMP.pmi1.io.crosslink) | MoveStatisticsScoreState (IMP::core) | RigidBodyAnglePairScore (IMP::core) |
| ClosedCubicSpline (IMP::core) | FixedRefiner (IMP::core) | MRCReaderWriter (IMP::em) | RigidBodyDerivativeGeometry (IMP::core) | UnaryFunction (IMP) |
| ClosePairContainer (IMP::container) | FixedXYZ (IMP::algebra) | MSConnectivityRestraint (IMP::core) | RigidBodyDerivativesGeometry (IMP::core) | UnaryFunctionEvaluate (IMP::score_functor) |
| ClosePairsFinder (IMP::core) | Flag (IMP) | MultipleBinormalRestraint (IMP::core) | RigidBodyDiffusion (IMP::atom) | UnboundedGridRangeD (IMP::algebra) |
| ClosePairsPairScore (IMP::core) | FloatIndex (IMP) | MultiStateModel (IMP::multi_state) | RigidBodyDistancePairScore (IMP::core) | Uncertainty (IMP::pmi1) |
| Cluster (IMP.pmi.output) | FNormal (IMP::isd) | MultiStateModelScore (IMP::multi_state) | RigidBodyFrameGeometry (IMP::core) | Uncertainty (IMP::pmi) |
| Cluster (IMP.pmi1.output) | ForceFieldParameters (IMP::atom) | MultivariateFNormalSufficient (IMP::isd) | RigidBodyFramesGeometry (IMP::core) | UncheckedWeakPointer (IMP) |
| Clustering (IMP.pmi.analysis) | ForceSwitch (IMP::atom) | MyMetric (write_a_metric) | RigidBodyHierarchyGeometry (IMP::core) | Undecorator (IMP) |
| Clustering (IMP.pmi1.analysis) | FormFactorTable (IMP::saxs) |
| RigidBodyMember (IMP::core) | UniformBackboneSampler (IMP::kinematics) |
| ClusterProvenance (IMP::core) | Fragment (IMP::atom) | RigidBodyMover (IMP::symmetry) | UniformBoundedRestraint (IMP::spb) |
| ClusterSet (IMP::em2d) | FreelyJointedChain (IMP::misc) | NearestNeighborD (IMP::algebra) | RigidBodyMover (IMP::core) | UniformPrior (IMP::isd) |
| CnSymmAxisDetector (IMP::cnmultifit) | FretData (IMP::isd) | NearestNeighborsClosePairsFinder (IMP::core) | RigidBodyNewMover (IMP::spb) | UnitSimplexBaseD (IMP::algebra) |
| CoarseCCatIntervals (IMP::em) | FretRestraint (IMP::isd) | NeighborsTable (IMP::core) | RigidBodyPackingScore (IMP::spb) | UnitSimplexD (IMP::algebra) |
| CoarseConvolution (IMP::em) | FStudentT (IMP::isd) | NestedRigidBodyStates (IMP::domino) | RigidBodyStates (IMP::domino) | UnitSimplexD<-1 > (IMP::algebra) |
| CoinFlipPairPredicate (IMP::core) | FunctorLinearInteractionPairScore (IMP::npctransport) | NetworkError (IMP.parallel) | RigidBodyTorque (IMP::core) | UnivariateFunction (IMP::isd) |
| CoinFlipQuadPredicate (IMP::core) | FunctorLinearSoftSpherePairScore (IMP::npctransport) | NOERestraint (IMP::isd) | RigidBodyTunneler (IMP::core) | UnorderedTypePairPredicate (IMP::core) |
| CoinFlipSingletonPredicate (IMP::core) | FusionRestraint (IMP.pmi.restraints.stereochemistry) | NoMoreWorkersError (IMP.parallel) | RigidBodyUmbrella (IMP::core) | UnorderedTypeQuadPredicate (IMP::core) |
| CoinFlipTripletPredicate (IMP::core) | FusionRestraint (IMP.pmi1.restraints.stereochemistry) | NonAlternativePDBSelector (IMP::atom) | RigidClosePairsFinder (IMP::core) | UnorderedTypeSingletonPredicate (IMP::core) |
| CollisionCrossSection (IMP::em2d) | FuzzyBoolean (IMP.pmi.restraints.proteomics) | NonCopyable (IMP) | RigidLeavesRefiner (IMP::multifit) | UnorderedTypeTripletPredicate (IMP::core) |
| Color (IMP::display) | FuzzyBoolean (IMP.pmi1.restraints.proteomics) | NonHydrogenMol2Selector (IMP::atom) | RigidMember (IMP::core) | UsageException (IMP) |
| ColorChange (IMP.pmi.tools) | FuzzyRestraint (IMP.pmi.restraints.proteomics) | NonHydrogenPDBSelector (IMP::atom) | RMFHierarchyHandler (IMP.pmi1.output) |
|
| ColorChange (IMP.pmi1.tools) | FuzzyRestraint (IMP.pmi1.restraints.proteomics) | NonRigidMember (IMP::core) | RMFHierarchyHandler (IMP.pmi.output) |
| Colored (IMP::display) |
| NonWaterNonHydrogenPDBSelector (IMP::atom) | RMSD (IMP.pmi1.analysis) | Value (IMP) |
| CombineProvenance (IMP::core) | NonWaterPDBSelector (IMP::atom) | RMSD (IMP.pmi.analysis) | ValueException (IMP) |
| CommandDispatcher (IMP) | GammaPrior (IMP::isd) | NormalizedSphereDistancePairScore (IMP::core) | RMSDMetric (IMP::spb) | Vector (IMP) |
| CommonEndpointPairFilter (IMP::misc) | Gaussian (IMP::spb) | NormalMover (IMP::core) | RMSDOutput (IMP.pmi1.io) | VectorBaseD (IMP::algebra) |
| CompareMultiStateModels (IMP::multi_state) | Gaussian (IMP::core) | NormalSigmaPCRestraint (IMP::isd) | RotamerAngleTuple (IMP::rotamer) | VectorD (IMP::algebra) |
| ComplementarityRestraint (IMP::multifit) | Gaussian3D (IMP::algebra) | NotPDBSelector (IMP::atom) | RotamerCalculator (IMP::rotamer) | VectorDEmbedding (IMP::statistics) |
| CompleteLinkage (IMP::em2d) | GaussianAnchorEMRestraint (IMP::isd) | NPDBSelector (IMP::atom) | RotamerLibrary (IMP::rotamer) | VectorKDMetric (IMP::algebra) |
| ComponentHeader (IMP::multifit) | GaussianEMRestraint (IMP::bayesianem) | Nuisance (IMP::isd) | Rotation2D (IMP::algebra) | VelocityScalingOptimizerState (IMP::atom) |
| CompositeJoint (IMP::kinematics) | GaussianEMRestraint (IMP.pmi.restraints.em) | NuisanceRangeModifier (IMP::spb) | Rotation3D (IMP::algebra) | VersionInfo (IMP) |
| CompositeRestraint (IMP.pmi.restraints.proteomics) | GaussianEMRestraint (IMP.pmi1.restraints.em) |
| RRT (IMP::kinematics) | VolumeRestraint (IMP::core) |
| CompositeRestraint (IMP.pmi1.restraints.proteomics) | GaussianEMRestraint (IMP::isd) | RRT::RRTNode (IMP::kinematics) | Voxel (IMP::em) |
| CompositeRestraint (IMP::npc) | GaussianEMRestraintWrapper (IMP.bayesianem.restraint) | Object (IMP) |
|
|
| CompositeRestraint (IMP::pmi) | GaussianProcessInterpolation (IMP::isd) | OneDimensionalDistribution (IMP::isd) |
| CompositeRestraint (IMP::pmi1) | GaussianProcessInterpolationRestraint (IMP::isd) | OneDimensionalSufficientDistribution (IMP::isd) | SameParticlePairFilter (IMP::spb) | WarningContext (IMP) |
| CompoundStates (IMP::domino) | GaussianRestraint (IMP::isd) | OpenCubicSpline (IMP::score_functor) | SameResiduePairFilter (IMP::atom) | WaterPDBSelector (IMP::atom) |
| Cone3D (IMP::algebra) | GeneralizedGuinierPorodFunction (IMP::isd) | OpenCubicSpline (IMP::core) | SameRigidBodyPairFilter (IMP::spb) | WeakPointer (IMP) |
| Configuration (IMP) | GenericAttributeSingletonScore (IMP::core) | Optimizer (IMP) | SampleAssignmentContainer (IMP::domino) | Weight (IMP::isd) |
| ConfigurationSet (IMP) | GenericBoundingBox3DSingletonScore (IMP::core) | OptimizerState (IMP) | SampledDensityMap (IMP::em) | WeightedDerivativesToRefined (IMP::core) |
| ConfigurationSetRMSDMetric (IMP::statistics) | GenericBoundingSphere3DSingletonScore (IMP::core) | Order (IMP::domino) | SampleProvenance (IMP::core) | WeightedExcludedVolumeRestraint (IMP::multifit) |
| ConfigurationSetXYZEmbedding (IMP::statistics) | GenericDistanceToSingletonScore (IMP::core) | OrderedDefaultDict (IMP.pmi.tools) | Sampler (IMP) | WeightedFitParameters (IMP::saxs) |
| ConjugateGradients (IMP.pmi.samplers) | GeometricHash (IMP::multifit) | OrderedDefaultDict (IMP.pmi1.tools) | SaveLink (IMP::rmf) | WeightedProfileFitter (IMP::saxs) |
| ConjugateGradients (IMP.pmi1.samplers) | GeometricPrimitiveD (IMP::algebra) | OrderedTypePairPredicate (IMP::core) | SaveOptimizerState (IMP::rmf) | WeightedSphereDistancePairScore (IMP::core) |
| ConjugateGradients (IMP::gsl) | Geometry (IMP::display) | OrderedTypeQuadPredicate (IMP::core) | SaveToConfigurationSetOptimizerState (IMP) | WeightedSum (IMP::core) |
| ConjugateGradients (IMP::core) | GeometryProcessor (IMP::display) | OrderedTypeSingletonPredicate (IMP::core) | SAXSISDRestraint (IMP.pmi.restraints.saxs) | WeightedSumOfExponential (IMP::core) |
| ConnectingPairContainer (IMP::container) | GeometrySet (IMP::display) | OrderedTypeTripletPredicate (IMP::core) | SAXSISDRestraint (IMP.pmi1.restraints.saxs) | WeightMover (IMP::isd) |
| ConnectivityCrossLinkMS (IMP.pmi1.restraints.crosslinking) | GetModelDensity (IMP.pmi.analysis) | OrientedSoap (IMP::score_functor) | SAXSMultiCombinationScore (IMP::multi_state) | WeightRestraint (IMP.pmi.restraints.parameters) |
| ConnectivityNetworkRestraint (IMP.pmi.restraints.proteomics) | GetModelDensity (IMP.pmi1.analysis) | OrientedSoapPairScore (IMP::atom) | SAXSMultiStateModelScore (IMP::multi_state) | WeightRestraint (IMP.pmi1.restraints.parameters) |
| ConnectivityNetworkRestraint (IMP.pmi1.restraints.proteomics) | GetModelDensity (IMP.sampcon.precision_rmsd) | OrPDBSelector (IMP::atom) | SAXSRestraint (IMP.pmi.restraints.saxs) | WeightRestraint (IMP::isd) |
| ConnectivityRestraint (IMP.pmi.restraints.proteomics) | GlobalStatisticsOptimizerState (IMP::npctransport) | Output (IMP.pmi.output) | SAXSRestraint (IMP.pmi1.restraints.saxs) | WeightScore (IMP::score_functor) |
| ConnectivityRestraint (IMP.pmi.restraints.stereochemistry) | GMMParser (IMP.pmi.mmcif) | Output (IMP.pmi1.output) | Scale (IMP::isd) | Worker (IMP.parallel) |
| ConnectivityRestraint (IMP.pmi1.restraints.proteomics) | GoodScoringModelSelector (IMP.sampcon.good_scoring_model_selector) | OutputStatistics (IMP.pmi.output) | ScopedAddCacheAttribute (IMP) | WorkerArray (IMP.parallel) |
| ConnectivityRestraint (IMP.pmi1.restraints.stereochemistry) | GridClosePairsFinder (IMP::core) | OutputStatistics (IMP.pmi1.output) | ScopedSetAttribute (IMP) | WormLikeChain (IMP::misc) |
| ConnectivityRestraint (IMP::core) | GridD (IMP::algebra) | OverallPositionRestraint (IMP::npc) | Score (IMP::score_functor) | WriteAssignmentContainer (IMP::domino) |
| ConnollySurfacePoint (IMP::algebra) | GridIndexD (IMP::algebra) |
| ScoreAccumulator (IMP) | WriteHDF5AssignmentContainer (IMP::domino) |
| ConsecutivePairContainer (IMP::container) | GridStates (IMP::em2d) | ScoreFunction (IMP::em2d) | WriteOptimizerState (IMP::display) |
| ConsecutivePairFilter (IMP::container) | GSLOptimizer (IMP::gsl) | PackedAssignmentContainer (IMP::domino) | ScoreState (IMP) | WritePDBOptimizerState (IMP::atom) |
| ConstantPairPredicate (IMP::core) |
| PairConstraint (IMP::core) | ScoreUnaryFunction (IMP::score_functor) | Writer (IMP.mmcif.util) |
| ConstantQuadPredicate (IMP::core) | PairContainer (IMP) | ScoreWithCache (IMP::score_functor) | Writer (IMP::display) |
| ConstantRestraint (IMP::core) | Harmonic (IMP::score_functor) | PairContainerAdaptor (IMP) | Scoring (IMP::npctransport) | WriterAdaptor (IMP::display) |
| ConstantSingletonPredicate (IMP::core) | Harmonic (IMP::core) | PairContainerSet (IMP::container) | ScoringFunction (IMP) | WriteRestraintScoresOptimizerState (IMP::core) |
| ConstantTripletPredicate (IMP::core) | HarmonicDistancePairScore (IMP::core) | PairContainerStatistics (IMP::container) | ScoringFunctionAdaptor (IMP) |
|
| Constraint (IMP) | HarmonicLowerBound (IMP::score_functor) | PairGeometry (IMP::display) | ScriptProvenance (IMP::core) |
| ConstVector (IMP) | HarmonicLowerBound (IMP::core) | PairListSubsetFilterTable (IMP::domino) | SecondaryStructure (IMP.pmi1.restraints.stereochemistry) | XAxialPositionLowerRestraint (IMP::npc) |
| ContactMapMetric (IMP::spb) | HarmonicSphereDistancePairScore (IMP::core) | PairModifier (IMP) | SecondaryStructureResidue (IMP::atom) | XAxialPositionRestraint (IMP::npc) |
| Container (IMP) | HarmonicSpringSingletonScore (IMP::npctransport) | PairPredicate (IMP) | Segment3D (IMP::algebra) | XAxialPositionUpperRestraint (IMP::npc) |
| Context (IMP.parallel) | HarmonicSurfaceDepthPairScore (IMP::core) | PairRestraint (IMP::core) | SegmentationParameters (IMP::em2d) | Xlink (IMP.EMageFit.buildxlinks) |
| Copy (IMP::atom) | HarmonicSurfaceDistancePairScore (IMP::core) | PairsConstraint (IMP::container) | SegmentGeometry (IMP::display) | XlinksDict (IMP.EMageFit.buildxlinks) |
| Cosine (IMP::core) | HarmonicSurfaceHeightPairScore (IMP::core) | PairScore (IMP) | Segments (IMP.pmi.tools) | XLTable (IMP.pmi1.io.xltable) |
| CoulombPairScore (IMP::atom) | HarmonicUpperBound (IMP::score_functor) | PairsGeometry (IMP::display) | Segments (IMP.pmi1.tools) | XorPDBSelector (IMP::atom) |
| Covariance1DFunction (IMP::isd) | HarmonicUpperBound (IMP::core) | PairsOptimizerState (IMP::container) | Selection (IMP::atom) | XplorReaderWriter (IMP::em) |
| Cover (IMP::core) | HarmonicUpperBoundSphereDiameterPairScore (IMP::core) | PairsRestraint (IMP::container) | SelectionGeometry (IMP::atom) | XYRadialPositionLowerRestraint (IMP.pmi1.restraints.npc) |
| CoverBond (IMP::atom) | HarmonicUpperBoundSphereDistancePairScore (IMP::core) | ParabolicFit2D (IMP::algebra) | Sequences (IMP.pmi1.topology) | XYRadialPositionLowerRestraint (IMP.pmi.restraints.npc) |
| CoverRefined (IMP::core) | HarmonicWell (IMP::core) | ParameterWarning (IMP.pmi) | Sequences (IMP.pmi.topology) | XYRadialPositionLowerRestraint (IMP::npc) |
| CPDBSelector (IMP::atom) | HarmonicWellPairScore (IMP::npctransport) | Particle (IMP) | SerialMover (IMP::core) | XYRadialPositionRestraint (IMP.pmi1.restraints.npc) |
| CreateLogContext (IMP) | HasHigherCCC (IMP::em2d) | ParticleAdaptor (IMP) | SetCheckState (IMP) | XYRadialPositionRestraint (IMP.pmi.restraints.npc) |
| CrossCorrelationRestraint (IMP.pmi1.restraints.em) | HasLowerScore (IMP::em2d) | ParticleEmbedding (IMP::statistics) | SetLogState (IMP) | XYRadialPositionRestraint (IMP::npc) |
| CrossLinkData (IMP::isd) | HeapAssignmentContainer (IMP::domino) | ParticleFactory (IMP::npctransport) | SetLogTarget (IMP) | XYRadialPositionUpperRestraint (IMP.pmi1.restraints.npc) |
| CrossLinkDataBase (IMP.pmi.io.crosslink) | HeapRecord (IMP.EMageFit.solutions_io) | ParticleIndexAdaptor (IMP) | SetNumberOfThreads (IMP) | XYRadialPositionUpperRestraint (IMP::npc) |
| CrossLinkDataBaseFromStructure (IMP.pmi.io.crosslink) | HelixDecorator (IMP::spb) | ParticleIndexesAdaptor (IMP) | SettingsData (IMP::multifit) | XYRadialPositionUpperRestraint (IMP.pmi.restraints.npc) |
| CrossLinkDataBaseFromStructure (IMP.pmi1.io.crosslink) | HelixRestraint (IMP.pmi.restraints.stereochemistry) | ParticleIndexPairsAdaptor (IMP) | SetupConnectivityNetworkRestraint (IMP.pmi.restraints.proteomics) | XYZ (IMP::core) |
| CrossLinkDataBaseKeywordsConverter (IMP.pmi.io.crosslink) | HelixRestraint (IMP.pmi1.restraints.stereochemistry) | ParticleInputs (IMP) | SetupConnectivityNetworkRestraint (IMP.pmi1.restraints.proteomics) | XYZDerivativeGeometry (IMP::core) |
| CrossLinkDataBaseKeywordsConverter (IMP.pmi1.io.crosslink) | HelixRestraint (IMP::atom) | ParticleOutputs (IMP) | SetupMembraneRestraint (IMP.pmi1.restraints.proteomics) | XYZDerivativesGeometry (IMP::core) |
| CrossLinkingMassSpectrometryRestraint (IMP.pmi.restraints.crosslinking) | HierarchiesGeometry (IMP::atom) | ParticlesAdaptor (IMP::domino) | SGEPEWorkerArray (IMP.parallel) | XYZR (IMP::core) |
| CrossLinkingMassSpectrometryRestraint (IMP.pmi1.restraints.crosslinking) | Hierarchy (IMP::core) | ParticlesDummyRestraint (IMP::em2d) | SGEQsubWorkerArray (IMP.parallel) | XYZRGeometry (IMP::core) |
| CrossLinkMS (IMP.pmi1.nonmantained) | Hierarchy (IMP::atom) | ParticleStates (IMP::domino) | Shift (IMP::score_functor) | XYZRsGeometry (IMP::core) |
| CrossLinkMSRestraint (IMP::isd) | HierarchyCounter (IMP::core) | ParticleStatesTable (IMP::domino) | Showable (IMP) | XYZStates (IMP::domino) |
| CrossLinkRestraintSet (IMP::pmi) | HierarchyDatabase (IMP.pmi1.tools) | ParticleTransportStatisticsOptimizerState (IMP::npctransport) | SigmoidRestraintSphere (IMP::pmi1) |
|
| CrossLinkTable (IMP.pmi.analysis) | HierarchyGeometry (IMP::atom) | PartitionalClustering (IMP::statistics) | SimpleAssignmentsTable (IMP::domino) |
| CrossLinkTable (IMP.pmi1.analysis) | HierarchyLoadLink (IMP::rmf) | PartitionalClusteringWithCenter (IMP::statistics) | SimpleLoadLink (IMP::rmf) | YAxialPositionLowerRestraint (IMP::npc) |
| CustomXYZR (IMP::misc) | HierarchySaveLink (IMP::rmf) | PathLocalPlanner (IMP::kinematics) | SimpleSaveLink (IMP::rmf) | YAxialPositionLowerRestraint (IMP.pmi.restraints.npc) |
| CvEstimator (IMP.isd.TuneRex) | HierarchyTraits (IMP::core) | PbcBoxedMover (IMP::spb) | Simplex (IMP::gsl) | YAxialPositionLowerRestraint (IMP.pmi1.restraints.npc) |
| Cylinder3D (IMP::algebra) | HierarchyVisitor (IMP::core) | PbcBoxedRigidBodyMover (IMP::spb) | SimulationData (IMP::npctransport) | YAxialPositionRestraint (IMP.pmi.restraints.npc) |
| CylinderGeometry (IMP::display) | HierarchyWithSitesLoadLink (IMP::npctransport) | PCAAligner (IMP::em) | Simulator (IMP::atom) | YAxialPositionRestraint (IMP::npc) |
| CylinderRestraint (IMP.pmi.restraints.basic) | HierarchyWithSitesSaveLink (IMP::npctransport) | PCAFitRestraint (IMP::em) | SingleLinkage (IMP::em2d) | YAxialPositionRestraint (IMP.pmi1.restraints.npc) |
| CylinderRestraint (IMP.pmi1.restraints.basic) | HighDensityEmbedding (IMP::em) | PCAFitRestraint (IMP::em2d) | SingletonConstraint (IMP::core) | YAxialPositionUpperRestraint (IMP::npc) |
| CysteineCrossLinkData (IMP::isd) | HistogramD (IMP::statistics) | PDBRecord (IMP::atom) | SingletonContainer (IMP) | YAxialPositionUpperRestraint (IMP.pmi.restraints.npc) |
| CysteineCrossLinkRestraint (IMP::isd) | History (IMP.isd.History) | PDBSelector (IMP::atom) | SingletonContainerAdaptor (IMP) | YAxialPositionUpperRestraint (IMP.pmi1.restraints.npc) |
|
| HybridMonteCarlo (IMP::isd) | PDBSequences (IMP.pmi.topology) | SingletonContainerSet (IMP::container) |
|
| HydrogenPDBSelector (IMP::atom) | PenalizedComplexityPrior (IMP::isd) | SingletonContainerStatistics (IMP::container) |
| Database2 (IMP.EMageFit.database) |
| PerinuclearVolumeLocationRestraint (IMP::npc) | SingletonGeometry (IMP::display) | ZAxialPositionLowerRestraint (IMP.pmi.restraints.npc) |
| DataEntry (IMP.pmi.output) | PermutationStates (IMP::domino) | SingletonModifier (IMP) | ZAxialPositionLowerRestraint (IMP::npc) |
| DataEntry (IMP.pmi1.output) | Image (IMP::em2d) | Pipe (IMP.isd.utils) | SingletonPredicate (IMP) | ZAxialPositionLowerRestraint (IMP.pmi1.restraints.npc) |
| DataObject (IMP::core) | ImageHeader (IMP::em) | PivyWriter (IMP::display) | SingletonRestraint (IMP::core) | ZAxialPositionRestraint (IMP.pmi.restraints.npc) |
| DataPointsAssignment (IMP::multifit) | ImageReaderWriter (IMP::em2d) | Plane3D (IMP::algebra) | SingletonsConstraint (IMP::container) | ZAxialPositionRestraint (IMP::npc) |
| DecayPairContainerOptimizerState (IMP::misc) | IMPRestraints (IMP.modeller) | PlaneDihedralRestraint (IMP.pmi.restraints.stereochemistry) | SingletonScore (IMP) | ZAxialPositionRestraint (IMP.pmi1.restraints.npc) |
| Decorator (IMP) | ImproperSingletonScore (IMP::atom) | PlaneDihedralRestraint (IMP.pmi1.restraints.stereochemistry) | SingletonsGeometry (IMP::display) | ZAxialPositionUpperRestraint (IMP::npc) |
| DefaultEmbeddingD (IMP::algebra) | InBoundingBox3DSingletonPredicate (IMP::core) | PlaneGeometry (IMP::display) | SingletonsOptimizerState (IMP::container) | ZAxialPositionUpperRestraint (IMP.pmi1.restraints.npc) |
| DegreesOfFreedom (IMP.pmi.dof) | InContainerPairFilter (IMP::container) | PMIMoleculeHierarchy (IMP.pmi.topology) | SingletonsRestraint (IMP::container) | ZAxialPositionUpperRestraint (IMP.pmi.restraints.npc) |
| DeltaDistributionFunction (IMP::saxs) | InContainerQuadFilter (IMP::container) | PMIMoleculeHierarchy (IMP.pmi1.topology) | SingletonStatistical (IMP::score_functor) | ZBiasSingletonScore (IMP::npctransport) |
| Demuxer (IMP.isd.demux_trajs) | InContainerSingletonFilter (IMP::container) | Pointer (IMP) | SitesGeometry (IMP::npctransport) |
|
| DenseFloatLogGridKD (IMP::algebra) | InContainerTripletFilter (IMP::container) | PointerMember (IMP) | SitesPairScore (IMP::npctransport) |
| DenseGrid3D (IMP::algebra) | Index (IMP) | PointGeometry (IMP::display) | SitesPairScoreParameters (IMP::npctransport) | graphNode (IMP.spatiotemporal.graphNode) |
| DenseGridStorageD (IMP::algebra) | IndexException (IMP) | PointToSphereDistance (IMP::score_functor) | SkinSurfaceGeometry (IMP::display) |
|
| DenseIntLogGrid3D (IMP::algebra) | IndexStates (IMP::domino) | PolarResamplingParameters (IMP::em2d) | SlabWithCylindricalPore (IMP::npctransport) |
| DensityDataPoints (IMP::multifit) | IndexVector (IMP) | PolygonGeometry (IMP::display) | SlabWithCylindricalPorePairScore (IMP::npctransport) | sfo_common (IMP.isd.shared_functions) |
| | | | |
