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IMP Reference Guide  2.21.0
The Integrative Modeling Platform
IMP::npctransport::Transporting Class Reference

A decorator for a particle transporting through a barrier. More...

#include <IMP/npctransport/Transporting.h>

+ Inheritance diagram for IMP::npctransport::Transporting:

Detailed Description

A decorator for a particle transporting through a barrier.

Definition at line 23 of file Transporting.h.

Public Member Functions

 Transporting (::IMP::Model *m,::IMP::ParticleIndex id)
 
 Transporting (const IMP::ParticleAdaptor &d)
 
bool get_is_last_entry_from_top () const
 returns whether the particle last entered the transport moiety from its More...
 
double get_last_tracked_z () const
 
int get_n_entries_bottom () const
 
int get_n_entries_top () const
 
void set_is_last_entry_from_top (bool is_last_entry_from_top)
 sets whether the particle last entered the transport moiety from its top More...
 
void set_last_tracked_z (double last_tracked_z)
 
void set_n_entries_bottom (int n)
 
void set_n_entries_top (int n)
 
void show (std::ostream &out=std::cout) const
 
- Public Member Functions inherited from IMP::Decorator
bool get_is_valid () const
 Returns true if constructed with a non-default constructor. More...
 
Modelget_model () const
 Returns the Model containing the particle. More...
 
Particleget_particle () const
 Returns the particle decorated by this decorator. More...
 
ParticleIndex get_particle_index () const
 Returns the particle index decorated by this decorator. More...
 
 operator Particle * () const
 
 operator ParticleIndex () const
 
Particleoperator-> () const
 

Static Public Member Functions

static IntKey get_is_last_entry_from_top_key ()
 Get the decorator key for is_last_entry_from_top. More...
 
static bool get_is_setup (const IMP::ParticleAdaptor &p)
 
static bool get_is_setup (Model *m, ParticleIndex pi)
 Return true if the particle is an instance of an Transporting. More...
 
static FloatKey get_last_tracked_z_key ()
 Get the decorator key last_tracked_z value. More...
 
static IntKey get_n_entries_bottom_key ()
 Get the decorator key n_entries_bottom value. More...
 
static IntKey get_n_entries_top_key ()
 Get the decorator key n_entries_top value. More...
 
static Transporting setup_particle (IMP::ParticleAdaptor pa, bool is_last_entry_from_top=false)
 
static Transporting setup_particle (Model *m, ParticleIndex pi, bool is_last_entry_from_top=false)
 

Additional Inherited Members

- Protected Member Functions inherited from IMP::Decorator
 Decorator (Model *m, ParticleIndex pi)
 
 Decorator (ParticleAdaptor p)
 

Member Function Documentation

bool IMP::npctransport::Transporting::get_is_last_entry_from_top ( ) const

returns whether the particle last entered the transport moiety from its

Definition at line 81 of file Transporting.h.

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static IntKey IMP::npctransport::Transporting::get_is_last_entry_from_top_key ( )
static

Get the decorator key for is_last_entry_from_top.

static bool IMP::npctransport::Transporting::get_is_setup ( Model m,
ParticleIndex  pi 
)
static

Return true if the particle is an instance of an Transporting.

Definition at line 66 of file Transporting.h.

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double IMP::npctransport::Transporting::get_last_tracked_z ( ) const

returns the Z coordinate of the particle, the last time it was tracked for transport statistics

Definition at line 96 of file Transporting.h.

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static FloatKey IMP::npctransport::Transporting::get_last_tracked_z_key ( )
static

Get the decorator key last_tracked_z value.

int IMP::npctransport::Transporting::get_n_entries_bottom ( ) const

gets the number of times the particle crossed from the bottom of the barrier into its interior

Definition at line 111 of file Transporting.h.

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static IntKey IMP::npctransport::Transporting::get_n_entries_bottom_key ( )
static

Get the decorator key n_entries_bottom value.

int IMP::npctransport::Transporting::get_n_entries_top ( ) const

gets the number of times the particle crossed from the top of the barrier into its interior

Definition at line 126 of file Transporting.h.

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static IntKey IMP::npctransport::Transporting::get_n_entries_top_key ( )
static

Get the decorator key n_entries_top value.

void IMP::npctransport::Transporting::set_is_last_entry_from_top ( bool  is_last_entry_from_top)

sets whether the particle last entered the transport moiety from its top

Definition at line 74 of file Transporting.h.

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void IMP::npctransport::Transporting::set_last_tracked_z ( double  last_tracked_z)

set the Z coordinate of the particle, the last time it was tracked for transport statistics

Definition at line 90 of file Transporting.h.

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void IMP::npctransport::Transporting::set_n_entries_bottom ( int  n)

sets the number of times the particle crossed from the bottom of the barrier into its interior

Definition at line 105 of file Transporting.h.

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void IMP::npctransport::Transporting::set_n_entries_top ( int  n)

sets the number of times the particle crossed from the top of the barrier into its interior

Definition at line 120 of file Transporting.h.

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static Transporting IMP::npctransport::Transporting::setup_particle ( Model m,
ParticleIndex  pi,
bool  is_last_entry_from_top = false 
)
static

Decorate a transporting particle, mainly for tracking transport statistics (number of transports, etc.). It is assumed the transport occurs along a z coordinate, and that the crossed barrier is bounded from top and bottom. The last tracked z is set to the z coordinate of p, initially, and n entries from bottom and top are set to 0

See Also
get_last_tracked_z
get_n_entries_bottom
get_n_entries_top
Parameters
mthe model
piparticle index
is_last_entry_from_tophas particle last entered from top of barrier (rather than bottom or unknown)
Returns
a Transporting object that decorates particle pi

Definition at line 63 of file Transporting.h.

static Transporting IMP::npctransport::Transporting::setup_particle ( IMP::ParticleAdaptor  pa,
bool  is_last_entry_from_top = false 
)
static
Returns
a Transporting object that decorates the particle specified by pa
See Also
setup_particle(m, pi, is_last_entry_from_top = false )

Definition at line 63 of file Transporting.h.


The documentation for this class was generated from the following file: