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IMP Reference Guide  2.21.0
The Integrative Modeling Platform
IMP::npctransport::SlabWithCylindricalPore Class Reference

#include <IMP/npctransport/SlabWithCylindricalPore.h>

+ Inheritance diagram for IMP::npctransport::SlabWithCylindricalPore:

Detailed Description

A decorator for a particle that represents a slab containing a cylindrical pore

Definition at line 24 of file SlabWithCylindricalPore.h.

Public Member Functions

 SlabWithCylindricalPore (::IMP::Model *m,::IMP::ParticleIndex id)
 
 SlabWithCylindricalPore (const IMP::ParticleAdaptor &d)
 
void show (std::ostream &out=std::cout) const
 
- Public Member Functions inherited from IMP::npctransport::SlabWithPore
 SlabWithPore (::IMP::Model *m,::IMP::ParticleIndex id)
 
 SlabWithPore (const IMP::ParticleAdaptor &d)
 
void add_to_pore_radius_derivative (double v, DerivativeAccumulator &d)
 
Float get_pore_radius () const
 get cylindrical pore radius More...
 
bool get_pore_radius_is_optimized () const
 
Float get_thickness () const
 returns whether the particle last entered the transport moiety from its More...
 
void set_pore_radius (double r) const
 set cylindrical pore radius More...
 
void set_pore_radius_is_optimized (bool tf) const
 Set whether the coordinates are optimized. More...
 
void set_thickness (double thickness)
 sets slab thickness More...
 
void show (std::ostream &out=std::cout) const
 
- Public Member Functions inherited from IMP::Decorator
bool get_is_valid () const
 Returns true if constructed with a non-default constructor. More...
 
Modelget_model () const
 Returns the Model containing the particle. More...
 
Particleget_particle () const
 Returns the particle decorated by this decorator. More...
 
ParticleIndex get_particle_index () const
 Returns the particle index decorated by this decorator. More...
 
 operator Particle * () const
 
 operator ParticleIndex () const
 
Particleoperator-> () const
 

Static Public Member Functions

static IntKey get_cylindrical_pore_key ()
 Get the decorator key indicating a cylindrical pore. More...
 
static bool get_is_setup (const IMP::ParticleAdaptor &p)
 
static bool get_is_setup (Model *m, ParticleIndex pi)
 Return true if the particle is an instance of SlabWithCylindricalPore. More...
 
static SlabWithCylindricalPore setup_particle (IMP::ParticleAdaptor pa, double thickness, double radius)
 
static SlabWithCylindricalPore setup_particle (Model *m, ParticleIndex pi, double thickness, double radius)
 
- Static Public Member Functions inherited from IMP::npctransport::SlabWithPore
static bool get_is_setup (const IMP::ParticleAdaptor &p)
 
static bool get_is_setup (Model *m, ParticleIndex pi)
 Return true if the particle is an instance of SlabWithPore. More...
 
static FloatKey get_pore_radius_key ()
 Get the key for the pore radius. More...
 
static FloatKey get_thickness_key ()
 Get the decorator key for is_last_entry_from_top. More...
 
static SlabWithPore setup_particle (IMP::ParticleAdaptor pa, double thickness, double pore_radius)
 
static SlabWithPore setup_particle (Model *m, ParticleIndex pi, double thickness, double pore_radius)
 

Additional Inherited Members

- Protected Member Functions inherited from IMP::Decorator
 Decorator (Model *m, ParticleIndex pi)
 
 Decorator (ParticleAdaptor p)
 

Member Function Documentation

static IntKey IMP::npctransport::SlabWithCylindricalPore::get_cylindrical_pore_key ( )
static

Get the decorator key indicating a cylindrical pore.

static bool IMP::npctransport::SlabWithCylindricalPore::get_is_setup ( Model m,
ParticleIndex  pi 
)
static

Return true if the particle is an instance of SlabWithCylindricalPore.

Definition at line 70 of file SlabWithCylindricalPore.h.

+ Here is the call graph for this function:

static SlabWithCylindricalPore IMP::npctransport::SlabWithCylindricalPore::setup_particle ( IMP::ParticleAdaptor  pa,
double  thickness,
double  radius 
)
static
Returns
a SlabWithCylindricalPore object that decorates the particle specified by pa
See Also
setup_particle(m, p, thickness , radius )

Definition at line 67 of file SlabWithCylindricalPore.h.

static SlabWithCylindricalPore IMP::npctransport::SlabWithCylindricalPore::setup_particle ( Model m,
ParticleIndex  pi,
double  thickness,
double  radius 
)
static

Decorate a particle that represents a slab (e.g. nuclear envelope) with specified thickness and a cylindrical pore of specified radius.

The slab is parallel to the x,y plain from z=-0.5*thickness to z=0.5*thickness, and the central axis of the pore lies on the origin.

Parameters
mthe model
pithe particle index
thicknessslab thickness
radiuspore radius
Returns
a SlabWithCylindricalPore object that decorates particle pi

Definition at line 67 of file SlabWithCylindricalPore.h.


The documentation for this class was generated from the following file: