IMP.pmi.alphabets.ResidueAlphabet Class Reference

Map between FASTA codes and residue types. More...

Inherits object.

Detailed Description

Map between FASTA codes and residue types.

Typically one would use the amino_acid, rna, or dna objects.

Note

This class is only available in Python.

Definition at line 9 of file alphabets.py.

Public Member Functions
def	get_chain_type
	Get the IMP.atom.ChainType for this alphabet. More...
def	get_one_letter_code_from_residue_type
	Given a residue type, return a one-letter code. More...
def	get_residue_type_from_one_letter_code
	Given a one-letter code, return an IMP.atom.ResidueType. More...

Member Function Documentation

def IMP.pmi.alphabets.ResidueAlphabet.get_chain_type

(

self

)

Get the IMP.atom.ChainType for this alphabet.

Definition at line 29 of file alphabets.py.

def IMP.pmi.alphabets.ResidueAlphabet.get_one_letter_code_from_residue_type	(		self,
			rt
	)

Given a residue type, return a one-letter code.

Definition at line 23 of file alphabets.py.

def IMP.pmi.alphabets.ResidueAlphabet.get_residue_type_from_one_letter_code	(		self,
			code
	)

Given a one-letter code, return an IMP.atom.ResidueType.

Definition at line 19 of file alphabets.py.

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The documentation for this class was generated from the following file:

• alphabets.py