IMP.pmi.topology.PDBSequences Class Reference

Data structure for reading and storing sequence data from PDBs. More...

Inherits object.

Detailed Description

Data structure for reading and storing sequence data from PDBs.

See Also

fasta_pdb_alignments.

Note

This class is only available in Python.

Definition at line 1088 of file pmi/topology/__init__.py.

Public Member Functions
def	__init__
	Read a PDB file and return all sequences for each contiguous fragment. More...

Constructor & Destructor Documentation

def IMP.pmi.topology.PDBSequences.__init__	(		self,
			model,
			pdb_fn,
			name_map = None
	)

Read a PDB file and return all sequences for each contiguous fragment.

Parameters

pdb_fn	file
name_map	dictionary mapping the pdb chain id to final stored name

Definition at line 1094 of file pmi/topology/__init__.py.

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The documentation for this class was generated from the following file:

• pmi/topology/__init__.py