- g -

• gather() : IMP::core::Hierarchy
• gather_by_attribute() : IMP::core::Hierarchy
• gather_by_attributes() : IMP::core::Hierarchy
• gather_slice() : IMP::core::Hierarchy
• GaussianProcessInterpolation() : IMP::isd::GaussianProcessInterpolation
• GaussianRestraint() : IMP::isd::GaussianRestraint
• GenericAttributeSingletonScore() : IMP::core::GenericAttributeSingletonScore< UF >
• get() : IMP.isd.utils.Pipe
• get_a() : IMP::algebra::LinearFit2D , IMP::algebra::ParabolicFit2D
• get_abort_evaluation() : IMP::kernel::ScoreAccumulator
• get_all_descendants() : IMP::core::Hierarchy
• get_all_possible_indexes() : IMP::container::TripletContainerSet , IMP::kernel::Container , IMP::container::PairContainerSet , IMP::container::QuadContainerSet , IMP::container::SingletonContainerSet
• get_all_possible_particles() : IMP::kernel::Container
• get_all_probabilities() : IMP::atom::SecondaryStructureResidue
• get_all_restraints_by_name() : IMP.restrainer.Restraint
• get_all_rigid_bodies() : IMP.restrainer.Restraint
• get_all_strings() : IMP::kernel::Key< ID, LazyAdd >
• get_angle() : IMP::algebra::Cone3D , IMP::algebra::Rotation2D
• get_angle_parameters() : IMP::atom::CHARMMParameters
• get_angle_step() : IMP::em2d::PolarResamplingParameters
• get_area() : IMP::algebra::Plane3D , IMP::algebra::SpherePatch3D
• get_assignment_and_RFs() : IMP.em2d.DominoModel.DominoModel
• get_assignment_info() : IMP.em2d.DominoModel.DominoModel
• get_assignment_scores() : IMP.em2d.DominoModel.DominoModel
• get_assignment_text() : IMP.em2d.DominoModel.DominoModel
• get_assignments() : IMP::kmeans::KMeans
• get_assignments_with_heap() : IMP.em2d.DominoModel.DominoModel
• get_atom() : IMP::atom::CHARMMBondEndpoint , IMP::atom::Hierarchy
• get_atom_exists() : IMP::rotamer::ResidueRotamer
• get_atoms() : IMP::atom::CHARMMConnection< D >
• get_attribute() : IMP::kernel::Model
• get_axis_and_angle() : IMP::algebra::Rotation3D
• get_b() : IMP::algebra::LinearFit2D , IMP::algebra::ParabolicFit2D
• get_base_plane() : IMP::algebra::Cone3D
• get_basis_vector_d() : IMP::algebra::VectorD< D >
• get_begin_index() : IMP::atom::Domain
• get_best_accepted_energy() : IMP::core::MonteCarlo
• get_bin_size() : IMP::saxs::Distribution< ValueT >
• get_bond() : IMP::atom::Bonded
• get_bond_parameters() : IMP::atom::CHARMMParameters
• get_bonded() : IMP::atom::Bond , IMP::atom::Bonded
• get_bonds() : IMP::atom::Bonded
• get_boundary_point() : IMP::algebra::SpherePatch3D
• get_bounding_box() : IMP::algebra::Cone3D , IMP::algebra::Cylinder3D , IMP::algebra::Ellipsoid3D , IMP::algebra::Plane3D , IMP::algebra::Segment3D , IMP::algebra::SpherePatch3D , IMP::algebra::BoundingBoxD< D >
• get_bounding_sphere() : IMP::atom::Hierarchy
• get_by_type() : IMP::atom::Hierarchy
• get_c() : IMP::algebra::ParabolicFit2D
• get_calls() : IMP::em2d::Fine2DRegistrationRestraint
• get_can_refine() : IMP::atom::BondEndpointsRefiner , IMP::core::ChildrenRefiner , IMP::core::FixedRefiner , IMP::core::LeavesRefiner , IMP::core::TableRefiner , IMP::kernel::Refiner
• get_cartesian_coordinates() : IMP::algebra::SphericalVector3D
• get_cc() : IMP.multifit.cluster.AlignmentClustering
• get_ccc() : IMP::em2d::RegistrationResult , IMP.em2d.solutions_io.ResultsDB
• get_center() : IMP::kmeans::KMeans
• get_centroid() : IMP::em::DensityMap
• get_chi1() : IMP::rotamer::RotamerAngleTuple
• get_chi2() : IMP::rotamer::RotamerAngleTuple
• get_chi3() : IMP::rotamer::RotamerAngleTuple
• get_chi4() : IMP::rotamer::RotamerAngleTuple
• get_child() : IMP::atom::Hierarchy
• get_children() : IMP::atom::Hierarchy
• get_cluster() : IMP::statistics::PartitionalClustering , IMP::statistics::PartitionalClusteringWithCenter
• get_cluster_representative() : IMP::statistics::PartitionalClustering , IMP::statistics::PartitionalClusteringWithCenter
• get_coarse_registration() : IMP::em2d::ProjectionFinder
• get_coarse_registration_time() : IMP::em2d::ProjectionFinder
• get_coarse_registrations_for_subject() : IMP::em2d::ProjectionFinder
• get_complete_registration() : IMP::em2d::ProjectionFinder
• get_components() : IMP::atom::HierarchyGeometry , IMP::atom::HierarchiesGeometry , IMP::atom::SelectionGeometry , IMP::core::RigidBodyHierarchyGeometry , IMP::display::Geometry
• get_condition_string() : IMP.em2d.Database.Database2
• get_cone_3d_geometry() : IMP::algebra::Cone3D
• get_connected_pairs() : IMP::core::ConnectivityRestraint , IMP::core::MSConnectivityRestraint
• get_contains() : IMP::algebra::BoundingBoxD< D > , IMP::algebra::SphereD< D > , IMP::algebra::SpherePatch3D , IMP::misc::LogPairScore
• get_contains_atom() : IMP::atom::CHARMMConnection< D >
• get_contains_particle() : IMP::kernel::SingletonContainer
• get_contains_particle_pair() : IMP::kernel::PairContainer
• get_contains_particle_quad() : IMP::kernel::QuadContainer
• get_contains_particle_triplet() : IMP::kernel::TripletContainer
• get_contains_residue() : IMP::atom::Fragment
• get_context() : IMP.parallel.Manager
• get_coordinate() : IMP::core::XYZ
• get_coordinates() : IMP::core::RigidBody , IMP::core::XYZ , IMP::rotamer::ResidueRotamer
• get_coordinates_are_optimized() : IMP::core::XYZ
• get_corner() : IMP::algebra::BoundingBoxD< D >
• get_count() : IMP::core::HierarchyCounter
• get_cropped() : IMP::em::DensityMap
• get_cube_d() : IMP::algebra::BoundingBoxD< D >
• get_cube_kd() : IMP::algebra::BoundingBoxD< D >
• get_current_file_name() : IMP::display::TextWriter
• get_current_time() : IMP::atom::Simulator
• get_cylinder_3d_geometry() : IMP::algebra::Cylinder3D
• get_data() : IMP::em2d::Image
• get_data_point() : IMP::kmeans::KMeans
• get_data_type() : IMP::em::DensityHeader
• get_decorator_name() : IMP::example::ExampleDecorator
• get_default_radius_key() : IMP::misc::CustomXYZR
• get_default_traits() : IMP::core::Hierarchy
• get_delta_q() : IMP::saxs::Profile
• get_density() : IMP::em::DensityMap
• get_derivative() : IMP::algebra::Rotation3D , IMP::core::XYZ
• get_derivative_matrix() : IMP::isd::BivariateFunction , IMP::isd::Covariance1DFunction , IMP::isd::UnivariateFunction , IMP::isd::Linear1DFunction , IMP::isd::GeneralizedGuinierPorodFunction
• get_derivative_vector() : IMP::isd::UnivariateFunction , IMP::isd::Linear1DFunction , IMP::isd::GeneralizedGuinierPorodFunction
• get_derivatives() : IMP::core::XYZ
• get_diffusion_coefficient_key() : IMP::atom::Diffusion
• get_dihedral() : IMP::core::XYZ
• get_dihedral_parameters() : IMP::atom::CHARMMParameters
• get_dim_index_by_location() : IMP::em::DensityMap
• get_direction() : IMP::algebra::Cone3D , IMP::algebra::Segment3D
• get_distance() : write_a_metric.MyMetric , IMP::algebra::Plane3D , IMP::algebra::Rotation3D , IMP::algebra::Segment3D , IMP::algebra::SphereD< D > , IMP::algebra::VectorD< D > , IMP::core::XYZ , IMP::core::XYZR
• get_distance_from_envelope() : IMP::em::MapDistanceTransform
• get_docking_order() : IMP.em2d.buildxlinks.DockOrder
• get_dummy_form_factor() : IMP::saxs::FormFactorTable
• get_dummy_form_factors() : IMP::saxs::FormFactorTable
• get_dummy_water_form_factor() : IMP::saxs::FormFactorTable
• get_edges() : IMP::algebra::BoundingBoxD< D >
• get_element() : IMP::atom::Atom , IMP::atom::ElementTable
• get_elementwise_product() : IMP::algebra::VectorD< D >
• get_ellipsoid_3d_geometry() : IMP::algebra::Ellipsoid3D
• get_embedding() : IMP::domino::ParticleStates , IMP::domino::XYZStates , IMP::domino::RigidBodyStates , IMP::domino::NestedRigidBodyStates
• get_enclosing_sphere() : IMP::core::XYZR
• get_end() : IMP::em2d::CenteredMat
• get_end_index() : IMP::algebra::BoundedGridRangeD< D > , IMP::atom::Domain
• get_ending_radius() : IMP::em2d::PolarResamplingParameters
• get_epsilon() : IMP::atom::ForceFieldParameters
• get_extended_index() : IMP::algebra::DefaultEmbeddingD< D > , IMP::algebra::LogEmbeddingD< D > , IMP::algebra::GridD< D, Storage, Value, EmbeddingT >
• get_fAngle1() : IMP::em::ImageHeader
• get_fFlag() : IMP::em::ImageHeader
• get_final_registration() : IMP::em2d::Fine2DRegistrationRestraint
• get_fine_registration_time() : IMP::em2d::ProjectionFinder
• get_fit_error() : IMP::algebra::LinearFit2D , IMP::algebra::ParabolicFit2D
• get_fixed_zxz_from_rotation() : IMP::algebra::FixedZXZ
• get_fixed_zyz_from_rotation() : IMP::algebra::FixedZYZ
• get_form_factor() : IMP::saxs::FormFactorTable
• get_form_factors() : IMP::saxs::FormFactorTable
• get_global_coordinates() : IMP::algebra::ReferenceFrame3D
• get_global_reference_frame() : IMP::algebra::ReferenceFrame3D
• get_global_score() : IMP::em2d::ProjectionFinder
• get_gnuplot_color() : IMP::display::Color
• get_grey_color() : IMP::display::Color
• get_grid_surface_cover() : IMP::algebra::Cylinder3D
• get_had_good_score() : IMP::kernel::ScoringFunction
• get_has_index() : IMP::algebra::BoundedGridRangeD< D > , IMP::algebra::SparseGridStorageD< D, VT, Base, Map >
• get_has_resolution() : IMP::em::DensityHeader
• get_header() : IMP::em2d::Image
• get_header_writable() : IMP::em::DensityMap
• get_hierarchies() : IMP::atom::Selection
• get_hierarchy_tree() : IMP::atom::Hierarchy
• get_hot_color() : IMP::display::Color
• get_id() : IMP::atom::Chain
• get_id_key() : IMP::atom::Chain
• get_identity_rotation_3d() : IMP::algebra::Rotation3D
• get_identity_transformation_2d() : IMP::algebra::Transformation2D
• get_identity_transformation_3d() : IMP::algebra::Transformation3D
• get_image_index() : IMP::em2d::RegistrationResult
• get_imp_hierarchy_by_id() : IMP.restrainer.Representation
• get_improper_parameters() : IMP::atom::CHARMMParameters
• get_in_ball() : IMP::algebra::NearestNeighborD< D >
• get_index() : IMP::algebra::BoundedGridRangeD< D > , IMP::algebra::SparseGridStorageD< D, VT, Base, Map > , IMP::atom::Residue
• get_indexes() : IMP::atom::BondPairContainer , IMP::container::PredicatePairsRestraint , IMP::container::PredicateQuadsRestraint , IMP::container::PredicateSingletonsRestraint , IMP::container::PredicateTripletsRestraint , IMP::kernel::PairContainer , IMP::kernel::QuadContainer , IMP::kernel::SingletonContainer , IMP::kernel::TripletContainer
• get_individual_placement_statistics() : IMP.em2d.solutions_io.ResultsDB
• get_inner_point_at() : IMP::algebra::Cylinder3D
• get_inner_state() : IMP::domino::PermutationStates
• get_input_containers() : IMP::core::ClosePairsFinder , IMP::kernel::Restraint , IMP::kernel::PairModifier , IMP::kernel::PairPredicate , IMP::kernel::PairScore , IMP::kernel::QuadModifier , IMP::kernel::QuadPredicate , IMP::kernel::QuadScore , IMP::kernel::Refiner , IMP::kernel::ScoreState , IMP::kernel::SingletonModifier , IMP::kernel::SingletonPredicate , IMP::kernel::SingletonScore , IMP::kernel::TripletModifier , IMP::kernel::TripletPredicate , IMP::kernel::TripletScore
• get_input_file_name() : IMP.test.TestCase
• get_input_particles() : IMP::isd::Covariance1DFunction , IMP::isd::UnivariateFunction , IMP::isd::Linear1DFunction , IMP::isd::GeneralizedGuinierPorodFunction , IMP::kernel::Restraint , IMP::kernel::PairModifier , IMP::kernel::PairPredicate , IMP::kernel::PairScore , IMP::kernel::QuadModifier , IMP::kernel::QuadPredicate , IMP::kernel::QuadScore , IMP::kernel::Refiner , IMP::kernel::ScoreState , IMP::kernel::SingletonModifier , IMP::kernel::SingletonPredicate , IMP::kernel::SingletonScore , IMP::kernel::TripletModifier , IMP::kernel::TripletPredicate , IMP::kernel::TripletScore , IMP::core::ClosePairsFinder , IMP::isd::BivariateFunction
• get_inputs() : IMP::core::ClosePairsFinder , IMP::kernel::ModelObject , IMP::kernel::PairModifier , IMP::kernel::PairPredicate , IMP::kernel::PairScore , IMP::kernel::QuadModifier , IMP::kernel::QuadPredicate , IMP::kernel::QuadScore , IMP::kernel::Refiner , IMP::kernel::SingletonModifier , IMP::kernel::SingletonPredicate , IMP::kernel::SingletonScore , IMP::kernel::TripletModifier , IMP::kernel::TripletPredicate , IMP::kernel::TripletScore , IMP::score_functor::Score
• get_interactions() : IMP::kernel::ModelObject
• get_interiors_intersect() : IMP::algebra::BoundingBoxD< D > , IMP::algebra::SphereD< D >
• get_internal() : IMP::core::Hierarchy
• get_internal_bonds() : IMP::atom::Bond
• get_internal_coordinates() : IMP::core::RigidMember , IMP::core::NonRigidMember
• get_interp() : IMP.isd.TuneRex.CvEstimator
• get_interpolated() : IMP::algebra::Rotation3D
• get_interpolated_rgb() : IMP::display::Color
• get_intersection() : IMP::algebra::BoundingBoxD< D >
• get_inv_rsigsq() : IMP::em::KernelParameters
• get_inv_sigsq() : IMP::em::RadiusDependentKernelParameters
• get_inverse() : IMP::algebra::Rotation2D , IMP::algebra::Rotation3D , IMP::algebra::Transformation2D
• get_is_changed() : IMP::kernel::Container
• get_is_decomposable() : IMP::kernel::Container
• get_is_evaluate_if_below() : IMP::kernel::ScoreAccumulator
• get_is_evaluate_if_good() : IMP::kernel::ScoreAccumulator
• get_is_in_range() : IMP::em2d::CenteredMat
• get_is_ok() : IMP::domino::SubsetFilter
• get_is_selected() : IMP::atom::PDBSelector , IMP::atom::NonAlternativePDBSelector , IMP::atom::ATOMPDBSelector , IMP::atom::CAlphaPDBSelector , IMP::atom::CBetaPDBSelector , IMP::atom::CPDBSelector , IMP::atom::NPDBSelector , IMP::atom::AllPDBSelector , IMP::atom::ChainPDBSelector , IMP::atom::WaterPDBSelector , IMP::atom::HydrogenPDBSelector , IMP::atom::NonWaterNonHydrogenPDBSelector , IMP::atom::NonWaterPDBSelector , IMP::atom::PPDBSelector , IMP::atom::AndPDBSelector , IMP::atom::OrPDBSelector , IMP::atom::NotPDBSelector
• get_is_simulation_particle() : IMP::atom::Simulator , IMP::isd::MolecularDynamics
• get_is_trivially_zero() : IMP::score_functor::Score
• get_is_valid() : IMP::atom::Hierarchy
• get_jet_color() : IMP::display::Color
• get_k() : IMP::core::Harmonic
• get_k_from_standard_deviation() : IMP::core::Harmonic
• get_kdist() : IMP::em::RadiusDependentKernelParameters
• get_key_exists() : IMP::kernel::Key< ID, LazyAdd >
• get_keys() : IMP::em2d::ProjectionParameters
• get_kinetic_energy() : IMP::atom::MolecularDynamics , IMP::isd::MolecularDynamics
• get_kinetic_temperature() : IMP::atom::MolecularDynamics
• get_largest_triangle() : IMP::algebra::Triangle3D
• get_last_accepted_energy() : IMP::core::MonteCarlo
• get_last_score() : IMP::kernel::Restraint , IMP::kernel::ScoringFunction , IMP::kernel::Optimizer
• get_leaves() : IMP::atom::Hierarchy , IMP::core::Hierarchy
• get_left_join_command() : IMP.em2d.solutions_io.ResultsDB
• get_lim() : IMP::em::KernelParameters
• get_local_coordinates() : IMP::algebra::ReferenceFrame3D
• get_local_reference_frame() : IMP::algebra::ReferenceFrame3D
• get_location_by_voxel() : IMP::em::DensityMap
• get_location_in_dim_by_voxel() : IMP::em::DensityMap
• get_locations_string() : IMP::em::DensityMap
• get_mass() : IMP::atom::ElementTable , IMP::atom::Selection
• get_max_distance() : IMP::saxs::Distribution< ValueT >
• get_max_q() : IMP::saxs::Profile
• get_max_value() : IMP::em::DensityMap
• get_maximum() : IMP::kernel::ScoreAccumulator
• get_maximum_extended_index() : IMP::algebra::BoundedGridRangeD< D > , IMP::algebra::SparseGridStorageD< D, VT, Base, Map >
• get_maximum_length() : IMP::algebra::BoundingBoxD< D >
• get_maximum_range() : IMP::score_functor::AddScores< BaseDistanceScore0, BaseDistanceScore1 > , IMP::score_functor::Score
• get_maximum_value_in_xy_plane() : IMP::em::DensityMap
• get_maximum_value_in_xz_plane() : IMP::em::DensityMap
• get_maximum_value_in_yz_plane() : IMP::em::DensityMap
• get_mbar() : IMP.isd.TuneRex.CvEstimator
• get_mean() : IMP::core::Harmonic
• get_member_particle_indexes() : IMP::core::RigidBody
• get_min_and_max_values() : IMP::em2d::Image
• get_min_q() : IMP::saxs::Profile
• get_min_value() : IMP::em::DensityMap
• get_minimum_extended_index() : IMP::algebra::BoundedGridRangeD< D > , IMP::algebra::SparseGridStorageD< D, VT, Base, Map >
• get_minimum_resampled_value() : IMP::em::SampledDensityMap
• get_model() : IMP::kernel::Optimizer , IMP::kernel::Decorator , IMP.restrainer.Representation
• get_model_dens_map() : IMP::em::FitRestraint
• get_model_objects() : IMP::kernel::Model
• get_movable_particles() : IMP::core::MonteCarlo
• get_name() : IMP.em2d.buildxlinks.Xlink , IMP::atom::ElementTable , IMP::em2d::Image , IMP::em2d::RegistrationResult
• get_native_rank() : IMP.em2d.solutions_io.ResultsDB
• get_native_solution() : IMP.em2d.solutions_io.ResultsDB
• get_ndims_x() : IMP::isd::Linear1DFunction , IMP::isd::UnivariateFunction , IMP::isd::GeneralizedGuinierPorodFunction
• get_ndims_x1() : IMP::isd::BivariateFunction , IMP::isd::Covariance1DFunction
• get_ndims_y() : IMP::isd::BivariateFunction , IMP::isd::Covariance1DFunction , IMP::isd::UnivariateFunction , IMP::isd::Linear1DFunction , IMP::isd::GeneralizedGuinierPorodFunction
• get_nearest_neighbor() : IMP::algebra::NearestNeighborD< D >
• get_nearest_neighbors() : IMP::algebra::NearestNeighborD< D >
• get_nearest_state() : IMP::domino::XYZStates , IMP::domino::ParticleStates , IMP::domino::RigidBodyStates , IMP::domino::NestedRigidBodyStates
• get_next_residue() : IMP::atom::Residue
• get_next_state() : IMP::domino::SubsetFilter
• get_non_sets_and_sets() : IMP::kernel::RestraintSet
• get_normfac() : IMP::em::RadiusDependentKernelParameters
• get_nth_largest_cluster() : IMP.em2d.solutions_io.ResultsDB
• get_number_of_angles() : IMP::em2d::PolarResamplingParameters
• get_number_of_assignments_for_vertex() : IMP::domino::DominoSampler
• get_number_of_cases() : IMP::rotamer::ResidueRotamer
• get_number_of_centers() : IMP::kmeans::KMeans
• get_number_of_data_points() : IMP::kmeans::KMeans
• get_number_of_entries() : IMP::domino::RestraintCache
• get_number_of_forward_steps() : IMP::core::MonteCarlo
• get_number_of_optimized_particles() : IMP::isd::Covariance1DFunction , IMP::isd::BivariateFunction , IMP::isd::UnivariateFunction , IMP::isd::Linear1DFunction , IMP::isd::GeneralizedGuinierPorodFunction
• get_number_of_particle_pairs() : IMP::kernel::PairContainer
• get_number_of_particle_quads() : IMP::kernel::QuadContainer
• get_number_of_particle_triplets() : IMP::kernel::TripletContainer
• get_number_of_particles() : IMP::isd::Covariance1DFunction , IMP::isd::BivariateFunction , IMP::isd::UnivariateFunction , IMP::isd::Linear1DFunction , IMP::isd::GeneralizedGuinierPorodFunction , IMP::kernel::SingletonContainer
• get_number_of_refined() : IMP::core::LeavesRefiner , IMP::atom::BondEndpointsRefiner , IMP::core::ChildrenRefiner , IMP::core::FixedRefiner , IMP::core::TableRefiner , IMP::kernel::Refiner
• get_number_of_rings() : IMP::em2d::PolarResamplingParameters
• get_number_of_solutions() : IMP::em::FittingSolutions
• get_number_of_updates() : IMP::core::PeriodicOptimizerState
• get_number_of_upward_steps() : IMP::core::MonteCarlo
• get_number_of_voxels() : IMP::em::DensityMap , IMP::algebra::BoundedGridRangeD< D >
• get_number_unique() : IMP::kernel::Key< ID, LazyAdd >
• get_nx() : IMP::em::DensityHeader
• get_ny() : IMP::em::DensityHeader
• get_nz() : IMP::em::DensityHeader
• get_old_rot() : IMP::em::ImageHeader
• get_opposite() : IMP::algebra::Plane3D
• get_orientation() : IMP::em2d::GridStates
• get_origin() : IMP::em::DensityHeader
• get_output_containers() : IMP::kernel::SingletonModifier , IMP::kernel::PairModifier , IMP::kernel::QuadModifier , IMP::kernel::ScoreState , IMP::kernel::TripletModifier
• get_output_particles() : IMP::kernel::PairModifier , IMP::core::Mover , IMP::core::MoverBase , IMP::kernel::QuadModifier , IMP::kernel::ScoreState , IMP::kernel::SingletonModifier , IMP::kernel::TripletModifier
• get_outputs() : IMP::kernel::SingletonModifier , IMP::kernel::ModelObject , IMP::kernel::PairModifier , IMP::kernel::QuadModifier , IMP::kernel::TripletModifier
• get_pair_filter() : IMP::atom::CHARMMStereochemistryRestraint
• get_pair_score() : IMP::core::MSConnectivityRestraint , IMP::core::ConnectivityRestraint
• get_parameter() : IMP.isd.AbstractGrid.AbstractService
• get_parameters_optimized() : IMP::em2d::ProjectionParameters
• get_params() : IMP::em::KernelParameters
• get_parent() : IMP::atom::Hierarchy , IMP::core::Hierarchy
• get_particle() : IMP::atom::Angle , IMP::atom::Dihedral , IMP::kernel::SingletonContainer , IMP::kernel::Decorator
• get_particle_assignments() : IMP::domino::AssignmentContainer
• get_particle_is_optimized() : IMP::isd::Covariance1DFunction , IMP::isd::BivariateFunction , IMP::isd::UnivariateFunction , IMP::isd::Linear1DFunction , IMP::isd::GeneralizedGuinierPorodFunction
• get_particle_pair() : IMP::kernel::PairContainer
• get_particle_pairs() : IMP::kernel::PairContainer , IMP::misc::LogPairScore
• get_particle_quad() : IMP::kernel::QuadContainer
• get_particle_quads() : IMP::kernel::QuadContainer
• get_particle_triplet() : IMP::kernel::TripletContainer
• get_particle_triplets() : IMP::kernel::TripletContainer
• get_particles() : IMP::kernel::SingletonContainer
• get_pdb() : IMP.isd.shared_functions.sfo_common
• get_phi_dihedral_atoms() : IMP::atom::Residue
• get_placement_fields() : IMP.em2d.solutions_io.ResultsDB
• get_placement_score_from_coordinates() : IMP.multifit.cluster.AlignmentClustering
• get_placement_statistics() : IMP.em2d.solutions_io.ResultsDB
• get_plane_3d_geometry() : IMP::algebra::Plane3D
• get_point() : IMP::example::ExampleTemplateClassD< D > , IMP::algebra::Triangle3D , IMP::algebra::Segment3D
• get_position() : IMP::em2d::GridStates
• get_posterior_mean() : IMP::isd::GaussianProcessInterpolation
• get_power_distance() : IMP::algebra::SphereD< D >
• get_preprocessing_time() : IMP::em2d::ProjectionFinder
• get_previous_residue() : IMP::atom::Residue
• get_probability() : IMP::isd::SlidingPriorRestraint , IMP::isd::TALOSRestraint , IMP::rotamer::RotamerAngleTuple , IMP::rotamer::ResidueRotamer
• get_probability_distribution_function() : IMP::statistics::HistogramD< D, Grid >
• get_projected() : IMP::algebra::Plane3D
• get_projection() : IMP::em2d::ProjectionStates
• get_projection_index() : IMP::em2d::RegistrationResult
• get_psi_dihedral_atoms() : IMP::atom::Residue
• get_quaternion() : IMP::algebra::Rotation3D
• get_quaternion_1() : IMP::em2d::ProjectionParameters
• get_radius() : IMP::algebra::Cone3D , IMP::atom::ForceFieldParameters , IMP::em2d::PolarResamplingParameters , IMP::saxs::FormFactorTable
• get_radius_key() : IMP::core::XYZR
• get_radius_of_gyration() : IMP::multifit::RadiusOfGyrationRestraint
• get_radius_step() : IMP::em2d::PolarResamplingParameters
• get_random_rotation_3d() : IMP::algebra::Rotation3D
• get_random_vector_in() : IMP::algebra::Cylinder3D , IMP::algebra::VectorD< D > , IMP::algebra::SphereD< D >
• get_random_vector_on() : IMP::algebra::SphereD< D > , IMP::algebra::VectorD< D >
• get_range_indexes() : IMP::kernel::PairContainer , IMP::kernel::QuadContainer , IMP::kernel::SingletonContainer , IMP::kernel::TripletContainer , IMP::atom::BondPairContainer
• get_reference_frame() : IMP::core::RigidBody
• get_refined() : IMP::atom::BondEndpointsRefiner , IMP::core::ChildrenRefiner , IMP::core::LeavesRefiner , IMP::core::TableRefiner , IMP::kernel::Refiner , IMP::core::FixedRefiner , IMP::core::TableRefiner , IMP::kernel::Refiner , IMP::core::LeavesRefiner , IMP::core::ChildrenRefiner , IMP::core::FixedRefiner
• get_registration_results() : IMP::em2d::Em2DRestraint , IMP::em2d::ProjectionFinder
• get_required_score_states() : IMP::kernel::ScoringFunction , IMP::core::IncrementalScoringFunction
• get_resampled() : IMP::em::DensityMap
• get_resampling_map() : IMP::em2d::PolarResamplingParameters
• get_resampling_maps() : IMP::em2d::PolarResamplingParameters
• get_residue() : IMP::atom::Hierarchy
• get_residue_coordinates() : IMP.em2d.buildxlinks.InitialDockingFromXlinks
• get_residue_particle() : IMP.em2d.buildxlinks.InitialDockingFromXlinks
• get_resolution() : IMP::em::DensityHeader
• get_restraint_by_name() : IMP.restrainer.Restraint
• get_restraint_value_for_assignment() : IMP.em2d.DominoModel.DominoModel
• get_restraints() : IMP::domino::RestraintCache
• get_restraints_for_native() : IMP.em2d.DominoModel.DominoModel
• get_restraints_names_used() : IMP.em2d.DominoModel.DominoModel
• get_results_unordered() : IMP.parallel.Context
• get_reversed() : IMP::em::ImageHeader
• get_rgb_color() : IMP::display::Color
• get_rigid_body_by_id() : IMP.restrainer.Restraint
• get_rkdist() : IMP::em::KernelParameters
• get_rmsd() : IMP::atom::RMSDCalculator
• get_rnormfac() : IMP::em::KernelParameters
• get_root() : IMP::core::Hierarchy , IMP::atom::Hierarchy
• get_root_imp_hierarchy() : IMP.restrainer.Representation
• get_rotamer() : IMP::rotamer::RotamerCalculator
• get_rotamers() : IMP::rotamer::RotamerLibrary
• get_rotamers_fast() : IMP::rotamer::RotamerLibrary
• get_rotated() : IMP::algebra::Rotation2D , IMP::algebra::Rotation3D
• get_rotated_one_coordinate() : IMP::algebra::Rotation3D
• get_rotation() : IMP::em2d::RegistrationResult , IMP::algebra::Transformation2D
• get_rotation_about_axis() : IMP::algebra::Rotation3D
• get_rotation_about_point() : IMP::algebra::Transformation3D , IMP::algebra::Transformation2D
• get_rotation_from_fixed_xyz() : IMP::algebra::FixedXYZ
• get_rotation_from_fixed_zxz() : IMP::algebra::Rotation3D
• get_rotation_from_fixed_zyz() : IMP::algebra::FixedZYZ
• get_rotation_from_matrix() : IMP::algebra::Rotation3D
• get_rotation_from_vector4d() : IMP::algebra::Rotation3D
• get_rotation_taking_first_to_second() : IMP::algebra::Rotation3D
• get_rotational_derivatives() : IMP::core::RigidBody
• get_rotational_diffusion_coefficient_key() : IMP::atom::RigidBodyDiffusion
• get_rsig() : IMP::em::KernelParameters
• get_rsigsq() : IMP::em::KernelParameters
• get_sample_assignments() : IMP::domino::DiscreteSampler
• get_sample_assignments_for_vertex() : IMP::domino::DominoSampler
• get_score() : IMP::em2d::ScoreFunction , IMP::domino::RestraintCache , IMP::em2d::RegistrationResult , IMP::kernel::Restraint , IMP::score_functor::Score , IMP::em::FittingSolutions , IMP::domino::RestraintCache
• get_score_and_derivative() : IMP::score_functor::Score
• get_score_states() : IMP::kernel::ScoringFunction
• get_scoring_function() : IMP::kernel::Optimizer
• get_second_derivative_matrix() : IMP::isd::Covariance1DFunction , IMP::isd::BivariateFunction
• get_second_derivative_vector() : IMP::isd::UnivariateFunction , IMP::isd::Linear1DFunction , IMP::isd::GeneralizedGuinierPorodFunction
• get_segment_3d_geometry() : IMP::algebra::Segment3D
• get_selected_particles() : IMP::atom::Selection
• get_sig() : IMP::em::RadiusDependentKernelParameters
• get_simulation_particles() : IMP::atom::Simulator
• get_size() : IMP::rotamer::ResidueRotamer
• get_skip_steps() : IMP::atom::RemoveTranslationOptimizerState , IMP::atom::RemoveRigidMotionOptimizerState
• get_slice() : IMP::domino::RestraintCache
• get_solutions() : IMP.em2d.solutions_io.ResultsDB
• get_solutions_from_list() : IMP.em2d.solutions_io.ResultsDB
• get_solutions_results_table() : IMP.em2d.solutions_io.ResultsDB
• get_solvent_accessibility() : IMP::saxs::SolventAccessibleSurface
• get_spacing() : IMP::em::DensityHeader , IMP::em::DensityMap
• get_sphere() : IMP::core::XYZR , IMP::misc::CustomXYZR
• get_sphere_patch_3d_geometry() : IMP::algebra::SpherePatch3D
• get_sq2pi3() : IMP::em::KernelParameters
• get_squared_distance() : IMP::multifit::RMSDClustering< TransT > , IMP::algebra::VectorD< D >
• get_squared_distance_to_centers() : IMP::kmeans::KMeans
• get_squared_rmsd() : IMP::atom::RMSDCalculator
• get_start() : IMP::em2d::CenteredMat
• get_starting_radius() : IMP::em2d::PolarResamplingParameters
• get_stream() : IMP::display::TextWriter
• get_strength() : IMP::domino::SubsetFilterTable
• get_string() : IMP::kernel::Key< ID, LazyAdd >
• get_subset() : IMP::domino::ParticleStatesTable
• get_subset_filter() : IMP::domino::SubsetFilterTable
• get_sufficient_statistics() : IMP::isd::vonMisesSufficient
• get_surface_area() : IMP::algebra::Cylinder3D , IMP::algebra::Cone3D , IMP::algebra::Ellipsoid3D , IMP::atom::Selection
• get_surface_point_at() : IMP::algebra::Cylinder3D
• get_symm_axis_alignments_from_model_to_density() : IMP::cnmultifit::AlignSymmetric
• get_table() : IMP.em2d.Database.Database2
• get_table_column_names() : IMP.em2d.Database.Database2
• get_table_types() : IMP.em2d.Database.Database2
• get_timessig() : IMP::em::KernelParameters
• get_tip() : IMP::algebra::Cone3D
• get_tmp_file_name() : IMP.test.TestCase
• get_top() : IMP::em::DensityHeader , IMP::statistics::Histogram
• get_torque() : IMP::core::RigidBody
• get_total_count() : IMP::statistics::Histogram , IMP::statistics::HistogramD< D, Grid >
• get_traits() : IMP::atom::Hierarchy
• get_transformation() : IMP::em::FittingSolutions
• get_transformation_aligning_first_to_second() : IMP::algebra::Transformation3D
• get_transformation_from() : IMP::algebra::ReferenceFrame3D
• get_transformation_to() : IMP::algebra::ReferenceFrame3D
• get_transformed() : IMP::em::DensityMap , IMP::algebra::Transformation2D , IMP::algebra::Transformation3D
• get_transformed_into() : IMP::em::DensityMap
• get_translation() : IMP::algebra::Transformation2D
• get_trilinearly_interpolated() : IMP::algebra::GridD< D, Storage, Value, EmbeddingT >
• get_uniform_surface_cover() : IMP::algebra::Cylinder3D , IMP::algebra::SphereD< D > , IMP::algebra::VectorD< D >
• get_union() : IMP::algebra::BoundingBoxD< D >
• get_unit_bounding_box_d() : IMP::algebra::BoundingBoxD< D >
• get_unit_bounding_box_kd() : IMP::algebra::BoundingBoxD< D >
• get_unit_cell() : IMP::algebra::DefaultEmbeddingD< D > , IMP::algebra::LogEmbeddingD< D >
• get_unit_vector() : IMP::algebra::VectorD< D >
• get_vacuum_form_factor() : IMP::saxs::FormFactorTable
• get_vacuum_form_factors() : IMP::saxs::FormFactorTable
• get_vacuum_water_form_factor() : IMP::saxs::FormFactorTable
• get_value() : IMP::kernel::SingletonPredicate , IMP::em::DensityMap , IMP::kernel::TripletPredicate , IMP::kernel::QuadPredicate , IMP::kernel::SingletonPredicate , IMP::kernel::PairPredicate , IMP::kernel::TripletPredicate , IMP::kernel::PairPredicate , IMP::core::MoverBase , IMP::kernel::QuadPredicate
• get_value_index() : IMP::kernel::QuadPredicate , IMP::kernel::SingletonPredicate , IMP::kernel::QuadPredicate , IMP::kernel::TripletPredicate , IMP::kernel::PairPredicate , IMP::kernel::TripletPredicate , IMP::kernel::PairPredicate
• get_vector_d_geometry() : IMP::algebra::VectorD< D >
• get_vector_to() : IMP::core::XYZ
• get_version_info() : IMP::base::Object , IMP::em::EnvelopeScore , IMP::em::PCAAligner
• get_vertex_assignments() : IMP::domino::DominoSampler
• get_vertices() : IMP::algebra::BoundingBoxD< D >
• get_volume() : IMP::algebra::Cylinder3D , IMP::atom::Selection , IMP::algebra::Cone3D , IMP::algebra::Ellipsoid3D , IMP::saxs::FormFactorTable , IMP::algebra::BoundingBoxD< D >
• get_voxel_by_location() : IMP::em::DensityMap
• get_vsig() : IMP::em::RadiusDependentKernelParameters
• get_vsigsq() : IMP::em::RadiusDependentKernelParameters
• get_was_good() : IMP::kernel::Restraint
• get_water_dummy_form_factors() : IMP::saxs::FormFactorTable
• get_water_form_factor() : IMP::saxs::FormFactorTable
• get_water_form_factors() : IMP::saxs::FormFactorTable
• get_water_vacuum_form_factors() : IMP::saxs::FormFactorTable
• get_xlinks_for_pair() : IMP.em2d.buildxlinks.XlinksDict
• get_xorigin() : IMP::em::DensityHeader
• get_xyz_keys() : IMP::core::XYZ
• get_yorigin() : IMP::em::DensityHeader
• get_zorigin() : IMP::em::DensityHeader
• GridD() : IMP::algebra::GridD< D, Storage, Value, EmbeddingT >
• GridStates() : IMP::em2d::GridStates