IMP
2.0.0
The Integrative Modeling Platform
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- c -
calc_all_voxel2loc() :
IMP::em::DensityMap
calc_score() :
IMP::em::CoarseCC
calcRMS() :
IMP::em::DensityMap
calculate_derivative_distribution() :
IMP::saxs::DeltaDistributionFunction
calculate_I0() :
IMP::saxs::Profile
calculate_particles_bounding_box() :
IMP::em::SampledDensityMap
calculate_profile() :
IMP::saxs::Profile
calculate_profile_constant_form_factor() :
IMP::saxs::Profile
calculate_profile_partial() :
IMP::saxs::Profile
cap_velocity_component() :
IMP::atom::MolecularDynamics
CenteredMat() :
IMP::em2d::CenteredMat
CentroidOfRefined() :
IMP::core::CentroidOfRefined
ChainPDBSelector() :
IMP::atom::ChainPDBSelector
CHARMMParameters() :
IMP::atom::CHARMMParameters
CHARMMPatch() :
IMP::atom::CHARMMPatch
CHARMMResidueTopology() :
IMP::atom::CHARMMResidueTopology
check_if_is_connected() :
IMP.em2d.Database.Database2
check_runnable_python_module() :
IMP.test.TestCase
check_unary_function_deriv() :
IMP.test.TestCase
check_unary_function_min() :
IMP.test.TestCase
ChildrenRefiner() :
IMP::core::ChildrenRefiner
clean() :
IMP::multifit::RMSDClustering< TransT >
clear() :
IMP::em::ImageHeader
,
IMP::misc::LogPairScore
clear_caches() :
IMP::kernel::ScoringFunction
,
IMP::base::Object
,
IMP::core::ExcludedVolumeRestraint
,
IMP::core::MinimumRestraint
clear_data() :
IMP::kmeans::KMeans
clear_particle_caches() :
IMP::kernel::Model
clear_range_cache() :
IMP::kernel::Optimizer
close() :
IMP.em2d.Database.Database2
CloseBipartitePairContainer() :
IMP::container::CloseBipartitePairContainer
ClosedCubicSpline() :
IMP::core::ClosedCubicSpline
ClosePairContainer() :
IMP::container::ClosePairContainer
ClosePairsPairScore() :
IMP::core::ClosePairsPairScore
cluster() :
IMP::multifit::RMSDClustering< TransT >
Color() :
IMP::display::Color
compare() :
IMP::algebra::VectorD< D >
compose() :
IMP::algebra::Transformation2D
,
IMP::algebra::Transformation3D
compute_xyz_top() :
IMP::em::DensityHeader
Configuration() :
IMP::kernel::Configuration
ConfigurationSetRMSDMetric() :
IMP::statistics::ConfigurationSetRMSDMetric
ConfigurationSetXYZEmbedding() :
IMP::statistics::ConfigurationSetXYZEmbedding
connect() :
IMP.em2d.Database.Database2
ConnectingPairContainer() :
IMP::container::ConnectingPairContainer
ConnectivityRestraint() :
IMP::core::ConnectivityRestraint
ConsecutivePairContainer() :
IMP::container::ConsecutivePairContainer
ConstantRestraint() :
IMP::core::ConstantRestraint
convolution() :
IMP::em::CoarseConvolution
copy_files() :
IMP.isd.AbstractGrid.AbstractGrid
copy_map() :
IMP::em::DensityMap
Cosine() :
IMP::core::Cosine
CoverRefined() :
IMP::core::CoverRefined
create() :
IMP.em2d.Database.Database2
,
IMP::em2d::ProjectionMask
create_angles() :
IMP::atom::CHARMMParameters
create_bond() :
IMP::atom::Bonded
create_clone() :
IMP::atom::Hierarchy
create_clone_one() :
IMP::atom::Hierarchy
create_coarse_assembly() :
IMP.em2d.DominoModel.DominoModel
create_compatible_rigid_body() :
IMP::core::RigidBody
create_connectivity_restraint() :
IMP::atom::Selection
create_cover() :
IMP::atom::Selection
create_current_decomposition() :
IMP::kernel::Restraint
,
IMP::kernel::QuadScore
,
IMP::kernel::SingletonScore
,
IMP::kernel::TripletScore
,
IMP::kernel::PairScore
create_custom_bond() :
IMP::atom::Bonded
create_decomposition() :
IMP::kernel::Restraint
create_density_header() :
IMP::em::DensityHeader
create_dihedrals() :
IMP::atom::CHARMMParameters
create_distance_restraint() :
IMP::atom::Selection
create_entry() :
IMP.isd.Analysis.Analysis
create_excluded_volume_restraint() :
IMP::atom::Hierarchy
create_fragment() :
IMP::atom::Hierarchy
create_hierarchy() :
IMP::atom::CHARMMTopology
create_internal_connectivity_restraint() :
IMP::atom::Selection
create_log() :
IMP.restrainer.Display
create_maps_for_resampling() :
IMP::em2d::PolarResamplingParameters
create_mask() :
IMP::em2d::MasksManager
create_masks() :
IMP::em2d::MasksManager
create_merge_tree() :
IMP.em2d.DominoModel.DominoModel
create_model_scoring_function() :
IMP::kernel::Model
create_particles_in_box() :
IMP.test.TestCase
create_point_particle() :
IMP.test.TestCase
create_protein() :
IMP::atom::Hierarchy
create_restraints() :
IMP::core::IncrementalScoringFunction
,
IMP::kernel::ScoringFunction
create_rigid_body() :
IMP::core::RigidBody
create_scoring_function() :
IMP::kernel::Restraint
create_simple_connectivity_on_molecules() :
IMP::restrainer::SimpleConnectivity
create_simple_diameter() :
IMP::restrainer::SimpleDiameter
create_simple_distance() :
IMP::restrainer::SimpleDistance
create_simple_em_fit() :
IMP::restrainer::SimpleEMFit
create_simple_excluded_volume_on_molecules() :
IMP::restrainer::SimpleExcludedVolume
create_simple_excluded_volume_on_rigid_bodies() :
IMP::restrainer::SimpleExcludedVolume
create_table() :
IMP.em2d.Database.Database2
create_topology() :
IMP::atom::CHARMMParameters
create_view() :
IMP.em2d.Database.Database2
create_xyzr_particles() :
IMP::core::XYZR
cross_correlation_coefficient() :
IMP::em::CoarseCC