Deprecated List

Member IMP::core::ClosePairsFinder::get_input_containers (Particle *p) const

use get_outputs() instead.

Member IMP::core::ClosePairsFinder::get_input_particles (Particle *p) const

use get_inputs() instead.

Class IMP::display::BildWriter

Use IMP::rmf when interfacing with Chimera.

Class IMP::display::ChimeraWriter

Use IMP::rmf instead when interfacing with Chimera.

Class IMP::display::CMMWriter

Use IMP::rmf for interfacing with Chimera.

Member IMP::kernel::Container::get_all_possible_particles () const

use get_all_possible_indexes() instead

Class IMP::kernel::GenericScopedRemoveRestraint< SS >

{With the advent of the ScoringFunction, this should not be needed.}

Class IMP::kernel::GenericScopedRestraint< SS >

{With the advent of the ScoringFunction, this should not be needed.}

Member IMP::kernel::PairContainer::get_contains_particle_pair (ParticlePair v) const

This is slow and dependent on the order of elements in the tuple.

Member IMP::kernel::PairContainer::get_number_of_particle_pairs () const

This can be very slow and is probably not useful

Member IMP::kernel::PairContainer::get_particle_pair (unsigned int i) const

Use indexes instead and thing about using the IMP_CONTAINER_FOREACH() macro.

Member IMP::kernel::PairModifier::get_input_containers (Particle *p) const

use get_outputs() instead.

Member IMP::kernel::PairModifier::get_input_particles (Particle *p) const

use get_inputs() instead.

Member IMP::kernel::PairModifier::get_output_containers (Particle *p) const

use get_outputs() instead.

Member IMP::kernel::PairModifier::get_output_particles (Particle *p) const

use get_outputs() instead.

Member IMP::kernel::PairPredicate::get_input_containers (Particle *p) const

use get_outputs() instead.

Member IMP::kernel::PairPredicate::get_input_particles (Particle *p) const

use get_inputs() instead.

Member IMP::kernel::PairScore::get_input_containers (Particle *p) const

use get_outputs() instead.

Member IMP::kernel::PairScore::get_input_particles (Particle *p) const

use get_inputs() instead.

Member IMP::kernel::QuadContainer::get_contains_particle_quad (ParticleQuad v) const

This is slow and dependent on the order of elements in the tuple.

Member IMP::kernel::QuadContainer::get_number_of_particle_quads () const

This can be very slow and is probably not useful

Member IMP::kernel::QuadContainer::get_particle_quad (unsigned int i) const

Use indexes instead and thing about using the IMP_CONTAINER_FOREACH() macro.

Member IMP::kernel::QuadModifier::get_input_containers (Particle *p) const

use get_outputs() instead.

Member IMP::kernel::QuadModifier::get_input_particles (Particle *p) const

use get_inputs() instead.

Member IMP::kernel::QuadModifier::get_output_containers (Particle *p) const

use get_outputs() instead.

Member IMP::kernel::QuadModifier::get_output_particles (Particle *p) const

use get_outputs() instead.

Member IMP::kernel::QuadPredicate::get_input_containers (Particle *p) const

use get_outputs() instead.

Member IMP::kernel::QuadPredicate::get_input_particles (Particle *p) const

use get_inputs() instead.

Member IMP::kernel::QuadScore::get_input_containers (Particle *p) const

use get_outputs() instead.

Member IMP::kernel::QuadScore::get_input_particles (Particle *p) const

use get_inputs() instead.

Member IMP::kernel::Refiner::get_input_containers (Particle *p) const

use get_outputs() instead.

Member IMP::kernel::Refiner::get_input_particles (Particle *p) const

use get_inputs() instead.

Member IMP::kernel::Restraint::get_input_containers () const

use get_inputs() instead.

Member IMP::kernel::Restraint::get_input_particles () const

use get_inputs() instead.

Member IMP::kernel::ScoreState::get_input_containers () const

use get_inputs() instead.

Member IMP::kernel::ScoreState::get_input_particles () const

use get_inputs() instead.

Member IMP::kernel::ScoreState::get_output_containers () const

use get_outputs() instead.

Member IMP::kernel::ScoreState::get_output_particles () const

use get_outputs() instead.

Member IMP::kernel::SingletonContainer::get_contains_particle (Particle *v) const

This is slow and dependent on the order of elements in the tuple.

Member IMP::kernel::SingletonContainer::get_number_of_particles () const

This can be very slow and is probably not useful

Member IMP::kernel::SingletonContainer::get_particle (unsigned int i) const

Use indexes instead and thing about using the IMP_CONTAINER_FOREACH() macro.

Member IMP::kernel::SingletonModifier::get_input_containers (Particle *p) const

use get_outputs() instead.

Member IMP::kernel::SingletonModifier::get_input_particles (Particle *p) const

use get_inputs() instead.

Member IMP::kernel::SingletonModifier::get_output_containers (Particle *p) const

use get_outputs() instead.

Member IMP::kernel::SingletonModifier::get_output_particles (Particle *p) const

use get_outputs() instead.

Member IMP::kernel::SingletonPredicate::get_input_containers (Particle *p) const

use get_outputs() instead.

Member IMP::kernel::SingletonPredicate::get_input_particles (Particle *p) const

use get_inputs() instead.

Member IMP::kernel::SingletonScore::get_input_containers (Particle *p) const

use get_outputs() instead.

Member IMP::kernel::SingletonScore::get_input_particles (Particle *p) const

use get_inputs() instead.

Member IMP::kernel::TripletContainer::get_contains_particle_triplet (ParticleTriplet v) const

This is slow and dependent on the order of elements in the tuple.

Member IMP::kernel::TripletContainer::get_number_of_particle_triplets () const

This can be very slow and is probably not useful

Member IMP::kernel::TripletContainer::get_particle_triplet (unsigned int i) const

Use indexes instead and thing about using the IMP_CONTAINER_FOREACH() macro.

Member IMP::kernel::TripletModifier::get_input_containers (Particle *p) const

use get_outputs() instead.

Member IMP::kernel::TripletModifier::get_input_particles (Particle *p) const

use get_inputs() instead.

Member IMP::kernel::TripletModifier::get_output_containers (Particle *p) const

use get_outputs() instead.

Member IMP::kernel::TripletModifier::get_output_particles (Particle *p) const

use get_outputs() instead.

Member IMP::kernel::TripletPredicate::get_input_containers (Particle *p) const

use get_outputs() instead.

Member IMP::kernel::TripletPredicate::get_input_particles (Particle *p) const

use get_inputs() instead.

Member IMP::kernel::TripletScore::get_input_containers (Particle *p) const

use get_outputs() instead.

Member IMP::kernel::TripletScore::get_input_particles (Particle *p) const

use get_inputs() instead.

Member IMP::modeller.load_restraints_file

Use ModelLoader instead.

Member IMP::modeller.read_pdb

Use IMP::atom::read_pdb() instead to read a PDB file, or ModelLoader to read a Modeller model.

Class IMP::statistics::Histogram

{Use HistogramD instead.}

Member IMP_DEPRECATED_OBJECT (replacement_classname)

command in the doxygen documentation.