IMP
2.0.0
The Integrative Modeling Platform
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- d -
decorate_particle() :
IMP::atom::Hierarchy
Decorator() :
IMP::kernel::Decorator
DeltaDistributionFunction() :
IMP::saxs::DeltaDistributionFunction
DensityFillingRestraint() :
IMP::em::DensityFillingRestraint
DensityMap() :
IMP::em::DensityMap
DerivativeAccumulator() :
IMP::kernel::DerivativeAccumulator
DerivativesFromRefined() :
IMP::core::DerivativesFromRefined
DerivativesToRefined() :
IMP::core::DerivativesToRefined
destroy() :
IMP::atom::Hierarchy
destroy_bond() :
IMP::atom::Bonded
destroyed_msg() :
IMP::em2d::Image
determine_grid_size() :
IMP::em::SampledDensityMap
DiameterRestraint() :
IMP::core::DiameterRestraint
DihedralRestraint() :
IMP::core::DihedralRestraint
DistanceRestraint() :
IMP::core::DistanceRestraint
Distribution() :
IMP::saxs::Distribution< ValueT >
distribution_2_profile() :
IMP::saxs::Profile
do_accept() :
IMP::core::MonteCarloMover
,
IMP::core::SerialMover
do_accept_or_reject_move() :
IMP::core::MonteCarlo
do_add_score_and_derivatives() :
IMP::container::PredicatePairsRestraint
,
IMP::container::PredicateQuadsRestraint
,
IMP::container::PredicateSingletonsRestraint
,
IMP::container::PredicateTripletsRestraint
,
IMP::core::IncrementalScoringFunction
,
IMP::example::ExampleRestraint
,
IMP::kernel::Restraint
,
IMP::kernel::ScoringFunction
do_after_evaluate() :
IMP::kernel::Container
do_close() :
IMP::display::Writer
do_clustering() :
IMP.multifit.cluster.AlignmentClustering
do_create_current_decomposition() :
IMP::core::ConnectivityRestraint
,
IMP::core::ExcludedVolumeRestraint
,
IMP::core::MSConnectivityRestraint
,
IMP::kernel::Restraint
,
IMP::kernel::PairScore
,
IMP::kernel::QuadScore
,
IMP::kernel::SingletonScore
,
IMP::kernel::TripletScore
do_create_decomposition() :
IMP::core::ExcludedVolumeRestraint
,
IMP::kernel::Restraint
do_evaluate() :
IMP::core::MonteCarlo
,
IMP::isd::HybridMonteCarlo
do_get_inputs() :
IMP::container::SingletonsRestraint
,
IMP::container::TripletsConstraint
,
IMP::container::TripletsRestraint
,
IMP::core::BallMover
,
IMP::core::ClosePairsFinder
,
IMP::core::ConnectivityRestraint
,
IMP::core::ExcludedVolumeRestraint
,
IMP::core::MinimumRestraint
,
IMP::core::Mover
,
IMP::core::MSConnectivityRestraint
,
IMP::core::NormalMover
,
IMP::core::PairConstraint
,
IMP::core::PairRestraint
,
IMP::core::QuadConstraint
,
IMP::core::QuadRestraint
,
IMP::core::RigidBodyMover
,
IMP::core::SerialMover
,
IMP::core::SingletonConstraint
,
IMP::core::SingletonRestraint
,
IMP::core::TripletConstraint
,
IMP::core::TripletRestraint
,
IMP::domino::DependencyScoreState
,
IMP::em::EnvelopeFitRestraint
,
IMP::example::ExampleRestraint
,
IMP::isd::GaussianProcessInterpolationRestraint
,
IMP::kernel::Particle
,
IMP::kernel::ScoringFunction
,
IMP::kernel::ModelObject
,
IMP::atom::BondPairContainer
,
IMP::kernel::PairModifier
,
IMP::kernel::PairPredicate
,
IMP::container::DistributePairsScoreState
,
IMP::kernel::PairScore
,
IMP::kernel::TripletPredicate
,
IMP::kernel::TripletModifier
,
IMP::kernel::SingletonScore
,
IMP::kernel::QuadModifier
,
IMP::kernel::SingletonModifier
,
IMP::container::DistributeQuadsScoreState
,
IMP::kernel::QuadPredicate
,
IMP::kernel::QuadScore
,
IMP::container::DistributeSingletonsScoreState
,
IMP::kernel::Refiner
,
IMP::container::DistributeTripletsScoreState
,
IMP::kernel::SingletonPredicate
,
IMP::container::MinimumPairRestraint
,
IMP::container::MinimumQuadRestraint
,
IMP::kernel::TripletScore
,
IMP::multifit::WeightedExcludedVolumeRestraint
,
IMP::container::MinimumSingletonRestraint
,
IMP::container::MinimumTripletRestraint
,
IMP::container::PairsConstraint
,
IMP::container::PairsRestraint
,
IMP::container::PredicatePairsRestraint
,
IMP::container::PredicateQuadsRestraint
,
IMP::container::PredicateSingletonsRestraint
,
IMP::container::PredicateTripletsRestraint
,
IMP::container::QuadsConstraint
,
IMP::container::QuadsRestraint
,
IMP::container::SingletonsConstraint
do_get_interactions() :
IMP::kernel::ModelObject
do_get_outputs() :
IMP::kernel::SingletonModifier
,
IMP::kernel::TripletModifier
,
IMP::kernel::Restraint
,
IMP::kernel::QuadModifier
,
IMP::kernel::ModelObject
,
IMP::core::MonteCarloMover
,
IMP::kernel::Container
,
IMP::core::TripletConstraint
,
IMP::core::QuadConstraint
,
IMP::container::DistributeTripletsScoreState
,
IMP::container::PairsConstraint
,
IMP::container::DistributePairsScoreState
,
IMP::container::DistributeSingletonsScoreState
,
IMP::core::SingletonConstraint
,
IMP::kernel::Particle
,
IMP::container::DistributeQuadsScoreState
,
IMP::container::QuadsConstraint
,
IMP::container::SingletonsConstraint
,
IMP::container::TripletsConstraint
,
IMP::core::PairConstraint
,
IMP::kernel::PairModifier
,
IMP::domino::DependencyScoreState
,
IMP::kernel::ScoringFunction
do_md_protein_statistics() :
IMP.isd.shared_functions.sfo_common
do_move() :
IMP::core::MoverBase
do_open() :
IMP::display::Writer
do_optimize() :
IMP::core::MonteCarlo
,
IMP::kernel::Optimizer
do_preprocess_for_fast_coarse_registration() :
IMP::em2d::ProjectionFinder
do_propose() :
IMP::core::BallMover
,
IMP::core::MonteCarloMover
,
IMP::core::Mover
,
IMP::core::SerialMover
,
IMP::core::RigidBodyMover
,
IMP::core::NormalMover
do_reject() :
IMP::core::RigidBodyMover
,
IMP::core::NormalMover
,
IMP::core::Mover
,
IMP::core::BallMover
,
IMP::core::MonteCarloMover
,
IMP::core::SerialMover
do_sampling() :
IMP.em2d.DominoModel.DominoModel
do_set_frame() :
IMP::display::Writer
,
IMP::display::TextWriter
do_show() :
IMP::isd::AmbiguousNOERestraint
,
IMP::isd::vonMisesKappaConjugateRestraint
,
IMP::isd::JeffreysRestraint
,
IMP::isd::vonMisesKappaJeffreysRestraint
,
IMP::isd::SlidingPriorRestraint
,
IMP::isd::AmbiguousRestraint
,
IMP::isd::MarginalNOERestraint
,
IMP::isd::MarginalHBondRestraint
,
IMP::em2d::CenteredMat
,
IMP::isd::NOERestraint
,
IMP::isd::LogicalORRestraint
do_step() :
IMP::core::MonteCarloWithLocalOptimization
,
IMP::atom::Simulator
,
IMP::core::MonteCarloWithBasinHopping
,
IMP::isd::HybridMonteCarlo
,
IMP::core::MonteCarlo
do_update() :
IMP::rmf::SaveOptimizerState
,
IMP::core::WriteRestraintScoresOptimizerState
,
IMP::core::PeriodicOptimizerState
,
IMP::misc::DecayPairContainerOptimizerState
do_update_dependencies() :
IMP::kernel::ScoringFunction
,
IMP::kernel::ScoreState
,
IMP::kernel::Particle
,
IMP::kernel::ModelObject
,
IMP::kernel::Restraint
,
IMP::core::MonteCarloMover
drop_table() :
IMP.em2d.Database.Database2
drop_view() :
IMP.em2d.Database.Database2
DummyRestraint() :
IMP::em2d::DummyRestraint
dump() :
IMP.isd.Analysis.Analysis