IMP
2.0.0
The Integrative Modeling Platform
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IMP
IMP Documentation
Application Index
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Modeling of GroEL with cnmultifit
Modeling of 3sfd with EMageFit
EMageFit protocol
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Determination of a Nup133 structure with FoXS
Function Examples
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Multithreaded evaluation using OpenMP
Integrative docking utility programs
Docking of PCSK9 with idock
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Modeling of 3sfd with multifit
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Related Functions
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Examples
- a -
AllBipartitePairContainersTemp :
IMP::container::AllBipartitePairContainer
AllPairContainersTemp :
IMP::container::AllPairContainer
AngleSingletonScoresTemp :
IMP::atom::AngleSingletonScore
AssignmentContainersTemp :
IMP::domino::AssignmentContainer
AssignmentsTablesTemp :
IMP::domino::AssignmentsTable
- b -
BerendsenThermostatOptimizerStatesTemp :
IMP::atom::BerendsenThermostatOptimizerState
BondedPairFiltersTemp :
IMP::atom::BondedPairFilter
BondEndpointsRefinersTemp :
IMP::atom::BondEndpointsRefiner
BondPairContainersTemp :
IMP::atom::BondPairContainer
BondSingletonScoresTemp :
IMP::atom::BondSingletonScore
BranchAndBoundSamplersTemp :
IMP::domino::BranchAndBoundSampler
- c -
CHARMMIdealResidueTopologiesTemp :
IMP::atom::CHARMMIdealResidueTopology
CHARMMParametersListTemp :
IMP::atom::CHARMMParameters
CHARMMPatchesTemp :
IMP::atom::CHARMMPatch
CHARMMResidueTopologiesTemp :
IMP::atom::CHARMMResidueTopology
CHARMMResidueTopologyBasesTemp :
IMP::atom::CHARMMResidueTopologyBase
CHARMMSegmentTopologiesTemp :
IMP::atom::CHARMMSegmentTopology
CHARMMTopologiesTemp :
IMP::atom::CHARMMTopology
ChiSquaredScoresTemp :
IMP::em2d::ChiSquaredScore
ClosePairContainersTemp :
IMP::container::ClosePairContainer
ComponentHeadersTemp :
IMP::multifit::ComponentHeader
ConfigurationSetsTemp :
IMP::kernel::ConfigurationSet
ConfigurationsTemp :
IMP::kernel::Configuration
ConnectingPairContainersTemp :
IMP::container::ConnectingPairContainer
ConsecutivePairContainersTemp :
IMP::container::ConsecutivePairContainer
ConstraintsTemp :
IMP::kernel::Constraint
ContainersTemp :
IMP::kernel::Container
CoulombPairScoresTemp :
IMP::atom::CoulombPairScore
CoverBondsTemp :
IMP::atom::CoverBond
- d -
DensityDataPointsListTemp :
IMP::multifit::DensityDataPoints
DensityMapsTemp :
IMP::em::DensityMap
DihedralSingletonScoresTemp :
IMP::atom::DihedralSingletonScore
DiscreteSamplersTemp :
IMP::domino::DiscreteSampler
DistanceFilterTablesTemp :
IMP::em2d::DistanceFilterTable
DominoSamplersTemp :
IMP::domino::DominoSampler
DummyRestraintsTemp :
IMP::em2d::DummyRestraint
- e -
Em2DRestraintsTemp :
IMP::em2d::Em2DRestraint
EM2DScoresTemp :
IMP::em2d::EM2DScore
EmbeddingsTemp :
IMP::statistics::Embedding
EqualitySubsetFilterTablesTemp :
IMP::domino::EqualitySubsetFilterTable
EquivalenceAndExclusionSubsetFilterTablesTemp :
IMP::domino::EquivalenceAndExclusionSubsetFilterTable
EquivalenceSubsetFilterTablesTemp :
IMP::domino::EquivalenceSubsetFilterTable
ExamplePairScoresTemp :
IMP::example::ExamplePairScore
ExclusionSubsetFilterTablesTemp :
IMP::domino::ExclusionSubsetFilterTable
- f -
Fine2DRegistrationRestraintsTemp :
IMP::em2d::Fine2DRegistrationRestraint
- g -
GeometriesTemp :
IMP::display::Geometry
GridStatesListTemp :
IMP::em2d::GridStates
GSLOptimizersTemp :
IMP::gsl::GSLOptimizer
- h -
HarmonicUpperBoundSphereDiameterPairScoresTemp :
IMP::core::HarmonicUpperBoundSphereDiameterPairScore
HarmonicWellsTemp :
IMP::core::HarmonicWell
- i -
ImagesTemp :
IMP::em2d::Image
ImproperSingletonScoresTemp :
IMP::atom::ImproperSingletonScore
InContainerPairFiltersTemp :
IMP::container::InContainerPairFilter
InContainerQuadFiltersTemp :
IMP::container::InContainerQuadFilter
InContainerSingletonFiltersTemp :
IMP::container::InContainerSingletonFilter
InContainerTripletFiltersTemp :
IMP::container::InContainerTripletFilter
- l -
LangevinThermostatOptimizerStatesTemp :
IMP::atom::LangevinThermostatOptimizerState
LennardJonesPairScoresTemp :
IMP::atom::LennardJonesPairScore
ListSubsetFilterTablesTemp :
IMP::domino::ListSubsetFilterTable
LoadLinksTemp :
IMP::rmf::LoadLink
- m -
MetricsTemp :
IMP::statistics::Metric
MinimumPairScoresTemp :
IMP::container::MinimumPairScore
MinimumQuadScoresTemp :
IMP::container::MinimumQuadScore
MinimumRestraintScoreSubsetFilterTablesTemp :
IMP::domino::MinimumRestraintScoreSubsetFilterTable
MinimumSingletonScoresTemp :
IMP::container::MinimumSingletonScore
MinimumTripletScoresTemp :
IMP::container::MinimumTripletScore
ModelObjectsTemp :
IMP::kernel::ModelObject
ModelsTemp :
IMP::kernel::Model
MonteCarloMoversTemp :
IMP::core::MonteCarloMover
MoverBasesTemp :
IMP::core::MoverBase
- o -
ObjectsTemp :
IMP::base::Object
OptimizerStatesTemp :
IMP::kernel::OptimizerState
OptimizersTemp :
IMP::kernel::Optimizer
- p -
PairContainersTemp :
IMP::kernel::PairContainer
PairListSubsetFilterTablesTemp :
IMP::domino::PairListSubsetFilterTable
PairModifiersTemp :
IMP::kernel::PairModifier
PairPredicatesTemp :
IMP::kernel::PairPredicate
PairsConstraintsTemp :
IMP::container::PairsConstraint
PairScoresTemp :
IMP::kernel::PairScore
PairsOptimizerStatesTemp :
IMP::container::PairsOptimizerState
ParticlesDummyRestraintsTemp :
IMP::em2d::ParticlesDummyRestraint
ParticleStatesListTemp :
IMP::domino::ParticleStates
ParticleStatesTablesTemp :
IMP::domino::ParticleStatesTable
PDBSelectorsTemp :
IMP::atom::PDBSelector
PeriodicOptimizerStatesTemp :
IMP::core::PeriodicOptimizerState
ProjectionFindersTemp :
IMP::em2d::ProjectionFinder
ProjectionStatesListTemp :
IMP::em2d::ProjectionStates
ProteinLigandAtomPairScoresTemp :
IMP::atom::ProteinLigandAtomPairScore
ProteinLigandRestraintsTemp :
IMP::atom::ProteinLigandRestraint
- q -
QuadContainersTemp :
IMP::kernel::QuadContainer
QuadModifiersTemp :
IMP::kernel::QuadModifier
QuadPredicatesTemp :
IMP::kernel::QuadPredicate
QuadsConstraintsTemp :
IMP::container::QuadsConstraint
QuadScoresTemp :
IMP::kernel::QuadScore
QuadsOptimizerStatesTemp :
IMP::container::QuadsOptimizerState
- r -
RefinersTemp :
IMP::kernel::Refiner
RemoveRigidMotionOptimizerStatesTemp :
IMP::atom::RemoveRigidMotionOptimizerState
RemoveTranslationOptimizerStatesTemp :
IMP::atom::RemoveTranslationOptimizerState
RepulsiveDistancePairScoresTemp :
IMP::isd::RepulsiveDistancePairScore
RestraintScoreSubsetFilterTablesTemp :
IMP::domino::RestraintScoreSubsetFilterTable
RestraintSetsTemp :
IMP::kernel::RestraintSet
RestraintsTemp :
IMP::kernel::Restraint
- s -
SampledDensityMapsTemp :
IMP::em::SampledDensityMap
SamplersTemp :
IMP::kernel::Sampler
SaveLinksTemp :
IMP::rmf::SaveLink
ScoreFunctionsTemp :
IMP::em2d::ScoreFunction
ScoreStatesTemp :
IMP::kernel::ScoreState
ScoringFunctionsTemp :
IMP::kernel::ScoringFunction
SimulatorsTemp :
IMP::atom::Simulator
SingletonContainersTemp :
IMP::kernel::SingletonContainer
SingletonModifiersTemp :
IMP::kernel::SingletonModifier
SingletonPredicatesTemp :
IMP::kernel::SingletonPredicate
SingletonsConstraintsTemp :
IMP::container::SingletonsConstraint
SingletonScoresTemp :
IMP::kernel::SingletonScore
SingletonsOptimizerStatesTemp :
IMP::container::SingletonsOptimizerState
SubsetFiltersTemp :
IMP::domino::SubsetFilter
SubsetFilterTablesTemp :
IMP::domino::SubsetFilterTable
SurfaceShellDensityMapsTemp :
IMP::em::SurfaceShellDensityMap
- t -
TextWritersTemp :
IMP::display::TextWriter
TripletContainersTemp :
IMP::kernel::TripletContainer
TripletModifiersTemp :
IMP::kernel::TripletModifier
TripletPredicatesTemp :
IMP::kernel::TripletPredicate
TripletsConstraintsTemp :
IMP::container::TripletsConstraint
TripletScoresTemp :
IMP::kernel::TripletScore
TripletsOptimizerStatesTemp :
IMP::container::TripletsOptimizerState
- u -
UnaryFunctionsTemp :
IMP::kernel::UnaryFunction
UndecoratorsTemp :
IMP::kernel::Undecorator
- v -
VectorKDMetricsTemp :
IMP::algebra::VectorKDMetric
VelocityScalingOptimizerStatesTemp :
IMP::atom::VelocityScalingOptimizerState
- w -
WriteOptimizerStatesTemp :
IMP::display::WriteOptimizerState
WritePDBOptimizerStatesTemp :
IMP::atom::WritePDBOptimizerState
WritersTemp :
IMP::display::Writer