IMP
2.0.0
The Integrative Modeling Platform
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- r -
R_factor_score() :
IMP::saxs::RadialDistributionFunction
RadialDistributionFunction() :
IMP::saxs::RadialDistributionFunction
RadiusOfGyrationRestraint() :
IMP::multifit::RadiusOfGyrationRestraint
,
IMP::saxs::RadiusOfGyrationRestraint
randomize_particles() :
IMP.test.TestCase
read() :
IMP::em::ImageHeader
,
IMP::em::MRCReaderWriter
,
IMP::em::SpiderMapReaderWriter
,
IMP::em2d::Image
,
IMP::em2d::RegistrationResult
,
IMP.isd.TALOSReader.TALOSReader
,
IMP::em::ImageHeader
read_AMBER_stats() :
IMP.isd.Analysis.Analysis
read_AMBER_variables() :
IMP.isd.Analysis.Analysis
read_from_floats() :
IMP::em2d::SpiderImageReaderWriter
read_from_image() :
IMP::em2d::RegistrationResult
read_from_ints() :
IMP::em2d::JPGImageReaderWriter
read_library_file() :
IMP::rotamer::RotamerLibrary
read_map() :
IMP::em::DensityMap
read_merge_tree() :
IMP.em2d.DominoModel.DominoModel
read_pts() :
IMP::algebra::VectorD< D >
read_SAXS_file() :
IMP::saxs::Profile
read_shell_commands() :
IMP.test.ApplicationTestCase
read_spheres() :
IMP::algebra::SphereD< D >
read_stats() :
IMP.isd.Analysis.Analysis
read_variables() :
IMP.isd.Analysis.Analysis
ReferenceFrame3D() :
IMP::algebra::ReferenceFrame3D
RefinedPairsPairScore() :
IMP::core::RefinedPairsPairScore
reject() :
IMP::core::MonteCarloMover
release_service() :
IMP.isd.AbstractGrid.AbstractGrid
remove() :
IMP::base::SparseSymmetricPairMemoizer< Generator, Checker >
remove_atom() :
IMP::atom::CHARMMIdealResidueTopology
remove_attribute() :
IMP::kernel::Model
remove_particle() :
IMP::core::TableRefiner
,
IMP::kernel::Model
remove_rigid_motion() :
IMP::atom::RemoveRigidMotionOptimizerState
remove_translation() :
IMP::atom::RemoveTranslationOptimizerState
resample() :
IMP::em::SampledDensityMap
,
IMP::em::SurfaceShellDensityMap
rescale_velocities() :
IMP::atom::BerendsenThermostatOptimizerState
,
IMP::atom::LangevinThermostatOptimizerState
,
IMP::atom::VelocityScalingOptimizerState
,
IMP.isd.shared_functions.sfo_common
reset() :
IMP::core::PeriodicOptimizerState
reset_data() :
IMP::em::DensityMap
reset_move() :
IMP::core::Mover
,
IMP::core::MoverBase
reset_moved_particles() :
IMP::core::IncrementalScoringFunction
Restraint() :
IMP::kernel::Restraint
,
IMP::saxs::Restraint
RestraintScoreSubsetFilterTable() :
IMP::domino::RestraintScoreSubsetFilterTable
RestraintSet() :
IMP::kernel::RestraintSet
retrieve_data() :
IMP.em2d.Database.Database2
RigidBodyDistancePairScore() :
IMP::core::RigidBodyDistancePairScore
RMSDCalculator() :
IMP::atom::RMSDCalculator
RMSDClustering() :
IMP::multifit::RMSDClustering< TransT >
RotamerAngleTuple() :
IMP::rotamer::RotamerAngleTuple
RotamerCalculator() :
IMP::rotamer::RotamerCalculator
RotamerLibrary() :
IMP::rotamer::RotamerLibrary
Rotation2D() :
IMP::algebra::Rotation2D
Rotation3D() :
IMP::algebra::Rotation3D
run() :
IMP.restrainer.XMLRestraint
,
IMP.restrainer.XMLRepresentation
,
IMP.restrainer.XMLDisplay
run_application() :
IMP.test.ApplicationTestCase
run_example() :
IMP.test.TestCase
run_monte_carlo() :
IMP.em2d.MonteCarloRelativeMoves.MonteCarloRelativeMoves
run_monte_carlo_with_relative_movers() :
IMP.em2d.MonteCarloRelativeMoves.MonteCarloRelativeMoves
run_python_application() :
IMP.test.ApplicationTestCase
run_python_module() :
IMP.test.TestCase
run_script() :
IMP.test.ApplicationTestCase
run_shell_command() :
IMP.test.ApplicationTestCase