A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X

A

CysteineCrossLinkRestraint (IMP::isd)

I

ParticleIndexPairsAdaptor (IMP::kernel)

SettingsData (IMP::multifit)

D

ParticleInputs (IMP::kernel)

SGEPESlaveArray (IMP.parallel)

AddBoolFlag (IMP::base)

Image (IMP::em2d)

ParticleOutputs (IMP::kernel)

SGEQsubSlaveArray (IMP.parallel)

AddFloatFlag (IMP::base)

Database2 (IMP.EMageFit.database)

ImageHeader (IMP::em)

ParticlesAdaptor (IMP::domino)

Shift (IMP::score_functor)

AddIntFlag (IMP::base)

DataObject (IMP::core)

ImageReaderWriter (IMP::em2d)

ParticlesDummyRestraint (IMP::em2d)

Showable (IMP::base)

AddScores (IMP::score_functor)

DataPointsAssignment (IMP::multifit)

IMPRestraints (IMP.modeller)

ParticleStates (IMP::domino)

SigmoidRestraintSphere (IMP::pmi)

AddStringFlag (IMP::base)

DecayPairContainerOptimizerState (IMP::misc)

ImproperSingletonScore (IMP::atom)

ParticleStatesTable (IMP::domino)

SimpleAssignmentsTable (IMP::domino)

AdvancedFlag (IMP::base)

Decorator (IMP::kernel)

InBoundingBox3DSingletonPredicate (IMP::core)

PartitionalClustering (IMP::statistics)

SimpleLoadLink (IMP::rmf)

Alignment (IMP.pmi.analysis)

DefaultEmbeddingD (IMP::algebra)

InContainerPairFilter (IMP::container)

PartitionalClusteringWithCenter (IMP::statistics)

SimpleSaveLink (IMP::rmf)

AlignmentClustering (IMP.multifit.cluster)

DeltaDistributionFunction (IMP::saxs)

InContainerQuadFilter (IMP::container)

PathLocalPlanner (IMP::kinematics)

Simplex (IMP::gsl)

AlignSymmetric (IMP::cnmultifit)

Demuxer (IMP.isd.demux_trajs)

InContainerSingletonFilter (IMP::container)

PCAAligner (IMP::em)

Simulator (IMP::atom)

AllBipartitePairContainer (IMP::container)

DenseFloatLogGridKD (IMP::algebra)

InContainerTripletFilter (IMP::container)

PCAFitRestraint (IMP::em)

SingleLinkage (IMP::em2d)

AllMol2Selector (IMP::atom)

DenseGrid3D (IMP::algebra)

IncrementalScoringFunction (IMP::core)

PCAFitRestraint (IMP::em2d)

SingletonConstraint (IMP::core)

AllPairContainer (IMP::container)

DenseGridStorageD (IMP::algebra)

Index (IMP::base)

PDBSelector (IMP::atom)

SingletonContainer (IMP::kernel)

AllPDBSelector (IMP::atom)

DenseIntLogGrid3D (IMP::algebra)

IndexException (IMP::base)

PermutationStates (IMP::domino)

SingletonContainerAdaptor (IMP::kernel)

AllSamePairPredicate (IMP::core)

DensityDataPoints (IMP::multifit)

IndexStates (IMP::domino)

Pipe (IMP.isd.utils)

SingletonContainerSet (IMP::container)

AllSameQuadPredicate (IMP::core)

DensityFillingRestraint (IMP::em)

IndexVector (IMP::base)

PivyWriter (IMP::display)

SingletonContainerStatistics (IMP::container)

AllSameSingletonPredicate (IMP::core)

DensityHeader (IMP::em)

InitialDockingFromXlinks (IMP.EMageFit.buildxlinks)

Plane3D (IMP::algebra)

SingletonGeometry (IMP::display)

AllSameTripletPredicate (IMP::core)

DensityMap (IMP::em)

InputAdaptor (IMP::base)

PlaneGeometry (IMP::display)

SingletonModifier (IMP::kernel)

AmbiguousCompositeRestraint (IMP.pmi.restraints.proteomics)

DependencyScoreState (IMP::domino)

InternalException (IMP::base)

Pointer (IMP::base)

SingletonPredicate (IMP::kernel)

AmbiguousNOERestraint (IMP::isd)

DerivativeAccumulator (IMP::kernel)

IntsOrder (IMP::em2d)

PointerMember (IMP::base)

SingletonRestraint (IMP::core)

AmbiguousRestraint (IMP::isd)

DerivativeCalculator (IMP::saxs)

IOException (IMP::base)

PointGeometry (IMP::display)

SingletonsConstraint (IMP::container)

Analysis (IMP.isd.Analysis)

DerivativesFromRefined (IMP::core)

IsCollisionPairPredicate (IMP::core)

PolarResamplingParameters (IMP::em2d)

SingletonScore (IMP::kernel)

AnalysisReplicaExchange0 (IMP.pmi.macros)

DerivativesToRefined (IMP::core)

IsosurfaceGeometry (IMP::display)

PolygonGeometry (IMP::display)

SingletonsGeometry (IMP::display)

AnchorsData (IMP::multifit)

DiameterRestraint (IMP::core)

J

PPDBSelector (IMP::atom)

SingletonsOptimizerState (IMP::container)

AndPDBSelector (IMP::atom)

Diffusion (IMP::atom)

Precision (IMP.pmi.analysis)

SingletonsRestraint (IMP::container)

Angle (IMP::atom)

Dihedral (IMP::atom)

JeffreysRestraint (IMP::isd)

PredicatePairsRestraint (IMP::container)

SingletonStatistical (IMP::score_functor)

AngleRestraint (IMP::core)

DihedralAngleRevoluteJoint (IMP::kinematics)

Joint (IMP::kinematics)

PredicateQuadsRestraint (IMP::container)

SkinSurfaceGeometry (IMP::display)

AngleSingletonScore (IMP::atom)

DihedralRestraint (IMP::core)

JPGImageReaderWriter (IMP::em2d)

PredicateSingletonScore (IMP::core)

Slave (IMP.parallel)

AngleTripletScore (IMP::core)

DihedralSingletonScore (IMP::atom)

K

PredicateSingletonsRestraint (IMP::container)

SlaveArray (IMP.parallel)

AngularVelocity (IMP::atom)

DirectorObjectChecker (IMP.test)

PredicateTripletsRestraint (IMP::container)

Slice (IMP::domino)

ApplicationTestCase (IMP.test)

DiscreteSampler (IMP::domino)

KClosePairsPairScore (IMP::core)

PrincipalComponentAnalysisD (IMP::algebra)

SmoothingFunction (IMP::atom)

Array (IMP::base)

DisjointSetsSubsetFilterTable (IMP::domino)

KernelParameters (IMP::em)

PrismaticJoint (IMP::kinematics)

Soap (IMP::score_functor)

AssemblyHeader (IMP::multifit)

DistanceFilter (IMP::em2d)

Key (IMP::kernel)

ProbabilisticAnchorGraph (IMP::multifit)

SoapPairFilter (IMP::atom)

Assignment (IMP::domino)

DistanceFilterTable (IMP::em2d)

KinematicForest (IMP::kinematics)

ProbabilisticSubsetFilterTable (IMP::domino)

SoftCylinderPairScore (IMP::misc)

AssignmentContainer (IMP::domino)

DistanceMask (IMP::em)

KinematicForestScoreState (IMP::kinematics)

ProcessOutput (IMP.pmi.output)

SoftSpherePairScore (IMP::core)

AssignmentsTable (IMP::domino)

DistancePairScore (IMP::core)

KinematicNode (IMP::kinematics)

Profile (IMP::saxs)

SolventAccessibleSurface (IMP::saxs)

Atom (IMP::atom)

DistancePairScore (IMP::score_functor)

KMeans (IMP::kmeans)

ProfileClustering (IMP::saxs)

SparseGrid3D (IMP::algebra)

AtomicCrossLinkMSRestraint (IMP::isd)

DistanceRestraint (IMP::core)

L

ProfileFitter (IMP::saxs)

SparseGridStorageD (IMP::algebra)

ATOMPDBSelector (IMP::atom)

DistributePairsScoreState (IMP::container)

Profiler (IMP::benchmark)

SparseSymmetricPairMemoizer (IMP::base)

AtomType (IMP::atom)

DistributeQuadsScoreState (IMP::container)

LabelGeometry (IMP::display)

ProjectingOptions (IMP::em2d)

SparseUnboundedGrid3D (IMP::algebra)

AttributeOptimizer (IMP::kernel)

DistributeSingletonsScoreState (IMP::container)

LangevinThermostatOptimizerState (IMP::atom)

ProjectingParameters (IMP::em2d)

SparseUnboundedGridD (IMP::algebra)

AttributeSingletonPredicate (IMP::core)

DistributeTripletsScoreState (IMP::container)

LeavesRefiner (IMP::core)

ProjectionFinder (IMP::em2d)

SphereD (IMP::algebra)

AverageDistanceLinkage (IMP::em2d)

Distribution (IMP::saxs)

LennardJones (IMP::atom)

ProjectionMask (IMP::em2d)

SphereDistance (IMP::score_functor)

B

DockOrder (IMP.EMageFit.buildxlinks)

LennardJonesPairScore (IMP::atom)

ProjectionParameters (IMP::em2d)

SphereDistancePairScore (IMP::core)

DOF (IMP::kinematics)

LessPairBySecond (IMP::em2d)

ProjectionParametersScoreState (IMP::em2d)

SphereDistanceToSingletonScore (IMP::core)

BackbonePDBSelector (IMP::atom)

DOFsSampler (IMP::kinematics)

Linear (IMP::core)

ProjectionStates (IMP::em2d)

SphereGeometry (IMP::display)

BallMover (IMP::core)

Domain (IMP::atom)

Linear1DFunction (IMP::isd)

ProteinKinematics (IMP::kinematics)

SpherePatch3D (IMP::algebra)

BallMover (IMP::symmetry)

DominoModel (IMP.EMageFit.domino_model)

LinearFit2D (IMP::algebra)

ProteinLigandAtomPairScore (IMP::atom)

SphericalVector3D (IMP::algebra)

BerendsenThermostatOptimizerState (IMP::atom)

DominoSampler (IMP::domino)

LinearLowerBound (IMP::score_functor)

ProteinLigandRestraint (IMP::atom)

SpiderHeader (IMP::em)

BinormalTerm (IMP::modeller)

Dope (IMP::score_functor)

LinearVelocity (IMP::atom)

ProteinsAnchorsSamplingSpace (IMP::multifit)

SpiderImageReaderWriter (IMP::em2d)

BivariateFunction (IMP::isd)

DopePairScore (IMP::atom)

ListAssignmentContainer (IMP::domino)

ProteomicsData (IMP::multifit)

SpiderMapReaderWriter (IMP::em)

Bond (IMP::atom)

DummyRestraint (IMP::em2d)

ListAssignmentsTable (IMP::domino)

ProteomicsEMAlignmentAtomic (IMP::multifit)

State (IMP::atom)

ForceFieldParameters::Bond (IMP::atom)

DummyRestraint (IMP::multifit)

ListPairContainer (IMP::container)

PseudoAtomicRestraint (IMP.pmi.restraints.stereochemistry)

StateAdaptor (IMP::misc)

BondAngleRevoluteJoint (IMP::kinematics)

DynamicListPairContainer (IMP::container)

ListQuadContainer (IMP::container)

PymolWriter (IMP::display)

Statistical (IMP::score_functor)

Bonded (IMP::atom)

DynamicListQuadContainer (IMP::container)

ListSingletonContainer (IMP::container)

PythonDirectedGraph (IMP::kernel)

StatisticalPairScore (IMP::core)

BondedPairFilter (IMP::atom)

DynamicListSingletonContainer (IMP::container)

ListSubsetFilterTable (IMP::domino)

Q

Statistics (IMP.isd.Statistics)

BondEndpointsRefiner (IMP::atom)

DynamicListTripletContainer (IMP::container)

ListTripletContainer (IMP::container)

SteepestDescent (IMP::core)

BondGeometry (IMP::atom)

DynamicNearestNeighbor3D (IMP::algebra)

LoadLink (IMP::rmf)

QuadConstraint (IMP::core)

StereochemistryPairFilter (IMP::atom)

BondGraph (IMP::atom)

E

LocalPlanner (IMP::kinematics)

QuadContainer (IMP::kernel)

Subsequence (IMP.pmi.io)

BondPairContainer (IMP::atom)

LocalSlave (IMP.parallel)

QuadContainerAdaptor (IMP::kernel)

SubsequenceData (IMP.pmi.io)

BondsGeometry (IMP::atom)

EdgePairGeometry (IMP::core)

LogEmbeddingD (IMP::algebra)

QuadContainerSet (IMP::container)

Subset (IMP::domino)

BondSingletonScore (IMP::atom)

EdgePairsGeometry (IMP::core)

LogHolder (IMP.isd.demux_trajs)

QuadContainerStatistics (IMP::container)

SubsetFilter (IMP::domino)

BoundedGridRangeD (IMP::algebra)

ElasticNetworkRestraint (IMP.pmi.restraints.stereochemistry)

LognormalRestraint (IMP::isd)

QuadModifier (IMP::kernel)

SubsetFilterTable (IMP::domino)

BoundingBoxD (IMP::algebra)

ElementTable (IMP::atom)

LogPairScore (IMP::misc)

QuadPredicate (IMP::kernel)

SurfaceMeshGeometry (IMP::display)

BoundingBoxGeometry (IMP::display)

Ellipsoid3D (IMP::algebra)

LogWrapper (IMP::isd)

QuadraticClosePairsFinder (IMP::core)

SurfaceShellDensityMap (IMP::em)

BoxSweepClosePairsFinder (IMP::core)

EllipsoidGeometry (IMP::display)

LowestRefinedPairScore (IMP::misc)

QuadRestraint (IMP::core)

Switching (IMP::isd)

BranchAndBoundAssignmentsTable (IMP::domino)

Em2DRestraint (IMP::em2d)

LRUCache (IMP::base)

QuadsConstraint (IMP::container)

Symmetric (IMP::pmi)

BranchAndBoundSampler (IMP::domino)

Em2DRestraintParameters (IMP::em2d)

M

QuadScore (IMP::kernel)

System (IMP.pmi.topology)

BrownianDynamics (IMP::atom)

EM2DScore (IMP::em2d)

QuadsOptimizerState (IMP::container)

SystemBase (IMP.pmi.topology)

BuildModel (IMP.pmi.macros)

Embedding (IMP::statistics)

Manager (IMP.parallel)

QuadsRestraint (IMP::container)

T

BuildModel1 (IMP.pmi.macros)

EMReaderWriter (IMP::em)

MapDistanceTransform (IMP::em)

QuasiNewton (IMP::gsl)

C

Ensemble (IMP::multifit)

MapReaderWriter (IMP::em)

R

TableRefiner (IMP::core)

Entry (IMP.isd.Entry)

MarginalHBondRestraint (IMP::isd)

TALOSReader (IMP.isd.TALOSReader)

CAlphaPDBSelector (IMP::atom)

EnvelopeFitRestraint (IMP::em)

MarginalNOERestraint (IMP::isd)

RadialDistributionFunction (IMP::saxs)

TALOSRestraint (IMP::isd)

CappedAssignmentContainer (IMP::domino)

EnvelopePenetrationRestraint (IMP::em)

MasksManager (IMP::em2d)

RadiusDependentDistanceMask (IMP::em)

TempDir (IMP.test)

CBetaPDBSelector (IMP::atom)

EnvelopeScore (IMP::em)

Mass (IMP::atom)

RadiusDependentKernelParameters (IMP::em)

TestCase (IMP.test)

CenteredMat (IMP::em2d)

EqualitySubsetFilterTable (IMP::domino)

MasterCommunicator (IMP.parallel.master_communicator)

RadiusOfGyrationRestraint (IMP::multifit)

TextInput (IMP::base)

CenterOfMass (IMP::atom)

EquivalenceAndExclusionSubsetFilterTable (IMP::domino)

MatchTemplateResult (IMP::em2d)

RadiusOfGyrationRestraint (IMP::saxs)

TextOutput (IMP::base)

Centroid (IMP::core)

EquivalenceSubsetFilterTable (IMP::domino)

MaxVectorKDMetric (IMP::algebra)

RAII (IMP::base)

TextWriter (IMP::display)

CentroidOfRefined (IMP::core)

Error (IMP.parallel)

MCCGSampler (IMP::core)

RangeViewAssignmentContainer (IMP::domino)

TIFFImageReaderWriter (IMP::em2d)

Chain (IMP::atom)

EuclideanMetric (IMP::statistics)

MeanAbsoluteDifference (IMP::em2d)

ReadAssignmentContainer (IMP::domino)

Timer (IMP::base)

ChainPDBSelector (IMP::atom)

EuclideanVectorKDMetric (IMP::algebra)

Memoizer (IMP::base)

ReadHDF5AssignmentContainer (IMP::domino)

TopologyPlot (IMP.pmi.plotting.topology)

Charged (IMP::atom)

EvaluationState (IMP::kernel)

MergeTreeBuilder (IMP::multifit)

RecursiveAssignmentsTable (IMP::domino)

TopologyReader (IMP.pmi.topology)

CHARMMAtom (IMP::atom)

EventException (IMP::base)

Metric (IMP::statistics)

RecursivePartitionalClusteringEmbedding (IMP::statistics)

Transform (IMP::core)

CHARMMAtomTopology (IMP::atom)

EventPairsOptimizerState (IMP::container)

MetricClosePairsFinder (IMP::misc)

RecursivePartitionalClusteringMetric (IMP::statistics)

Transformation2D (IMP::algebra)

CHARMMBondEndpoint (IMP::atom)

EventQuadsOptimizerState (IMP::container)

MinimumPairRestraint (IMP::container)

RecursiveStates (IMP::domino)

Transformation3D (IMP::algebra)

CHARMMBondParameters (IMP::atom)

EventSingletonsOptimizerState (IMP::container)

MinimumPairScore (IMP::container)

RefCountChecker (IMP.test)

Transformation3DToText (IMP.EMageFit.imp_general.io)

CHARMMConnection (IMP::atom)

EventTripletsOptimizerState (IMP::container)

MinimumQuadRestraint (IMP::container)

Reference (IMP::core)

TransformationAndReflectionSymmetry (IMP::core)

CHARMMDihedralParameters (IMP::atom)

ExampleComplexRestraint (IMP::example)

MinimumQuadScore (IMP::container)

ReferenceFrame3D (IMP::algebra)

TransformationJoint (IMP::kinematics)

CharmmForceFieldRestraint (IMP.pmi.restraints.stereochemistry)

ExampleConstraint (IMP::example)

MinimumRestraint (IMP::core)

ReferenceFrameGeometry (IMP::display)

TransformationSymmetry (IMP::core)

CharmmForceFieldRestraint (IMP.pmi.restraints_new.stereochemistry)

ExampleDecorator (IMP::example)

MinimumRestraintScoreSubsetFilterTable (IMP::domino)

ReferenceFrameToText (IMP.EMageFit.imp_general.io)

TransformedDistancePairScore (IMP::core)

CHARMMIdealResidueTopology (IMP::atom)

ExampleObject (IMP::example)

MinimumSingletonRestraint (IMP::container)

RefinedPairsPairScore (IMP::core)

TransformMover (IMP::pmi)

CHARMMInternalCoordinate (IMP::atom)

ExamplePairScore (IMP::example)

MinimumSingletonScore (IMP::container)

Refiner (IMP::kernel)

Triangle3D (IMP::algebra)

CHARMMParameters (IMP::atom)

ExampleRestraint (IMP::example)

MinimumTripletRestraint (IMP::container)

Reflection3D (IMP::algebra)

TriangleGeometry (IMP::display)

CHARMMPatch (IMP::atom)

ExampleSingletonModifier (IMP::example)

MinimumTripletScore (IMP::container)

RegistrationResult (IMP::em2d)

TripletConstraint (IMP::core)

CHARMMResidueTopology (IMP::atom)

ExampleSubsetFilterTable (IMP::example)

Model (IMP::kernel)

RelativePositionMover (IMP::em2d)

TripletContainer (IMP::kernel)

CHARMMResidueTopologyBase (IMP::atom)

ExampleTemplateClassD (IMP::example)

ModelException (IMP::base)

RemoteError (IMP.parallel)

TripletContainerAdaptor (IMP::kernel)

CHARMMSegmentTopology (IMP::atom)

ExampleUnaryFunction (IMP::example)

ModellerRestraints (IMP.modeller)

RemoveRigidMotionOptimizerState (IMP::atom)

TripletContainerSet (IMP::container)

CHARMMStereochemistryRestraint (IMP::atom)

Exception (IMP::base)

ModelLoader (IMP.modeller)

RemoveTranslationOptimizerState (IMP::atom)

TripletContainerStatistics (IMP::container)

CHARMMTopology (IMP::atom)

ExcludedVolumeRestraint (IMP::core)

ModelObject (IMP::kernel)

ReplicaExchange (IMP.pmi.samplers)

TripletModifier (IMP::kernel)

ChecksScoreState (IMP::core)

ExcludedVolumeSphere (IMP.pmi.restraints.stereochemistry)

ModifierVisitor (IMP::core)

ReplicaExchange (IMP::mpi)

TripletPredicate (IMP::kernel)

ChiFreeScore (IMP::saxs)

ExclusionSubsetFilterTable (IMP::domino)

Mol2Selector (IMP::atom)

ReplicaExchange0 (IMP.pmi.macros)

TripletRestraint (IMP::core)

ChildrenRefiner (IMP::core)

ExclusiveConsecutivePairContainer (IMP::container)

MolCnSymmAxisDetector (IMP::cnmultifit)

Representation (IMP.pmi.representation)

TripletsConstraint (IMP::container)

ChimeraWriter (IMP::display)

ExclusiveConsecutivePairFilter (IMP::container)

MolecularDynamics (IMP::atom)

Representation (IMP::atom)

TripletScore (IMP::kernel)

ChiScore (IMP::saxs)

ExtendedGridIndexD (IMP::algebra)

MolecularDynamics (IMP.pmi.samplers)

RepulsiveDistancePairScore (IMP::isd)

TripletsOptimizerState (IMP::container)

ChiScoreLog (IMP::saxs)

EzRestraint (IMP::atom)

MolecularDynamics (IMP::isd)

Residue (IMP::atom)

TripletsRestraint (IMP::container)

ChiSquaredScore (IMP::em2d)

F

MolecularDynamicsMover (IMP::isd)

ResidueAngleRestraint (IMP.pmi.restraints.stereochemistry)

TruncatedHarmonic (IMP::core)

ChiSquareMetric (IMP::statistics)

Molecule (IMP::atom)

ResidueBondRestraint (IMP.pmi.restraints.stereochemistry)

Typed (IMP::core)

CloseBipartitePairContainer (IMP::container)

FFTFitting (IMP::multifit)

MonteCarlo (IMP.pmi.samplers)

ResidueDihedralRestraint (IMP.pmi.restraints.stereochemistry)

TypedPairScore (IMP::core)

ClosedCubicSpline (IMP::core)

FFTFittingOutput (IMP::multifit)

MonteCarlo (IMP::core)

ResidueRotamer (IMP::rotamer)

U

ClosePairContainer (IMP::container)

FilterGeometry (IMP::display)

MonteCarloMover (IMP::core)

ResidueType (IMP::atom)

ClosePairsFinder (IMP::core)

Fine2DRegistrationRestraint (IMP::em2d)

MonteCarloMoverResult (IMP::core)

Resolution (IMP::pmi)

UnaryFunction (IMP::kernel)

ClosePairsPairScore (IMP::core)

FitRestraint (IMP::em)

MonteCarloRelativeMoves (IMP.EMageFit.monte_carlo)

Restraint (IMP::kernel)

UnaryFunctionEvaluate (IMP::score_functor)

Clustering (IMP.pmi.analysis)

FittingSolutionRecord (IMP::multifit)

MonteCarloWithBasinHopping (IMP::core)

Restraint (IMP::saxs)

UnboundedGridRangeD (IMP::algebra)

ClusterSet (IMP::em2d)

FittingSolutions (IMP::em)

MonteCarloWithLocalOptimization (IMP::core)

RestraintCache (IMP::domino)

Uncertainty (IMP::pmi)

CnSymmAxisDetector (IMP::cnmultifit)

FittingStates (IMP::multifit)

MoveStatisticsScoreState (IMP::core)

RestraintGeometry (IMP::display)

UncheckedWeakPointer (IMP::base)

CoarseCARestraint (IMP.pmi.restraints_new.stereochemistry)

FixedRefiner (IMP::core)

MRCReaderWriter (IMP::em)

RestraintsAdaptor (IMP::kernel)

Undecorator (IMP::kernel)

CoarseCC (IMP::em)

FixedXYZ (IMP::algebra)

MSConnectivityRestraint (IMP::core)

RestraintScoreSubsetFilterTable (IMP::domino)

UniformBackboneSampler (IMP::kinematics)

CoarseCCatIntervals (IMP::em)

Flag (IMP::base)

MultipleBinormalRestraint (IMP::modeller)

RestraintSet (IMP::kernel)

UniformPrior (IMP::isd)

CoarseConvolution (IMP::em)

FloatIndex (IMP::kernel)

MultivariateFNormalSufficient (IMP::isd)

RestraintSetGeometry (IMP::display)

UnivariateFunction (IMP::isd)

CoinFlipPairPredicate (IMP::core)

FNormal (IMP::isd)

MyMetric (write_a_metric)

RestraintsScoringFunction (IMP::core)

UnorderedTypePairPredicate (IMP::core)

CoinFlipQuadPredicate (IMP::core)

ForceFieldParameters (IMP::atom)

N

ResultsDB (IMP.EMageFit.solutions_io)

UnorderedTypeQuadPredicate (IMP::core)

CoinFlipSingletonPredicate (IMP::core)

ForceSwitch (IMP::atom)

RevoluteJoint (IMP::kinematics)

UnorderedTypeSingletonPredicate (IMP::core)

CoinFlipTripletPredicate (IMP::core)

FormFactorTable (IMP::saxs)

NearestNeighborD (IMP::algebra)

RigidBodiesImageFitRestraint (IMP::em2d)

UnorderedTypeTripletPredicate (IMP::core)

CollisionCrossSection (IMP::em2d)

Fragment (IMP::atom)

NearestNeighborsClosePairsFinder (IMP::core)

RigidBodiesProfileHandler (IMP::saxs)

UsageException (IMP::base)

Color (IMP::display)

FretData (IMP::isd)

NeighborsTable (IMP::core)

RigidBody (IMP::core)

V

ColorChange (IMP.pmi.tools)

FretRestraint (IMP::isd)

NestedRigidBodyStates (IMP::domino)

RigidBodyDerivativeGeometry (IMP::core)

Colored (IMP::display)

G

NetworkError (IMP.parallel)

RigidBodyDerivativesGeometry (IMP::core)

Value (IMP::base)

CommandDispatcher (IMP.kernel)

NOERestraint (IMP::isd)

RigidBodyDiffusion (IMP::atom)

ValueException (IMP::base)

CommonEndpointPairFilter (IMP::misc)

Gaussian (IMP::core)

NoMoreSlavesError (IMP.parallel)

RigidBodyDistancePairScore (IMP::core)

Vector (IMP::base)

ComplementarityRestraint (IMP::multifit)

Gaussian3D (IMP::algebra)

NonAlternativePDBSelector (IMP::atom)

RigidBodyFrameGeometry (IMP::core)

VectorBaseD (IMP::algebra)

CompleteLinkage (IMP::em2d)

GaussianEMRestraint (IMP::isd)

NonCopyable (IMP::base)

RigidBodyFramesGeometry (IMP::core)

VectorD (IMP::algebra)

ComponentHeader (IMP::multifit)

GaussianProcessInterpolation (IMP::isd)

NonHydrogenMol2Selector (IMP::atom)

RigidBodyHierarchyGeometry (IMP::core)

VectorDEmbedding (IMP::statistics)

ComponentTopology (IMP.pmi.topology)

GaussianProcessInterpolationRestraint (IMP::isd)

NonRigidMember (IMP::core)

RigidBodyMember (IMP::core)

VectorKDMetric (IMP::algebra)

CompositeJoint (IMP::kinematics)

GaussianRestraint (IMP::isd)

NonWaterNonHydrogenPDBSelector (IMP::atom)

RigidBodyMover (IMP::symmetry)

VelocityScalingOptimizerState (IMP::atom)

CompositeRestraint (IMP.pmi.restraints.proteomics)

GeneralizedGuinierPorodFunction (IMP::isd)

NonWaterPDBSelector (IMP::atom)

RigidBodyMover (IMP::core)

VersionInfo (IMP::base)

CompositeRestraint (IMP::pmi)

GenericAttributeSingletonScore (IMP::core)

NormalizedSphereDistancePairScore (IMP::core)

RigidBodyStates (IMP::domino)

VolumeRestraint (IMP::core)

CompoundStates (IMP::domino)

GenericBoundingBox3DSingletonScore (IMP::core)

NormalMover (IMP::core)

RigidBodyTorque (IMP::core)

Voxel (IMP::em)

Cone3D (IMP::algebra)

GenericDistanceToSingletonScore (IMP::core)

NotPDBSelector (IMP::atom)

RigidBodyTunneler (IMP::core)

W

Configuration (IMP::kernel)

GeometricHash (IMP::multifit)

NPDBSelector (IMP::atom)

RigidBodyUmbrella (IMP::core)

ConfigurationSet (IMP::kernel)

GeometricPrimitiveD (IMP::algebra)

Nuisance (IMP::isd)

RigidClosePairsFinder (IMP::core)

WarningContext (IMP::base)

ConfigurationSetRMSDMetric (IMP::statistics)

Geometry (IMP::display)

O

RigidMember (IMP::core)

WaterPDBSelector (IMP::atom)

ConfigurationSetXYZEmbedding (IMP::statistics)

GeometryProcessor (IMP::display)

RotamerAngleTuple (IMP::rotamer)

WeakPointer (IMP::base)

ConjugateGradients (IMP.pmi.samplers)

GeometrySet (IMP::display)

Object (IMP::base)

RotamerCalculator (IMP::rotamer)

Weight (IMP::isd)

ConjugateGradients (IMP::gsl)

GetModelDensity (IMP.pmi.analysis)

OpenCubicSpline (IMP::core)

RotamerLibrary (IMP::rotamer)

WeightedDerivativesToRefined (IMP::core)

ConjugateGradients (IMP::core)

GridClosePairsFinder (IMP::core)

OpenCubicSpline (IMP::score_functor)

Rotation2D (IMP::algebra)

WeightedExcludedVolumeRestraint (IMP::multifit)

ConnectingPairContainer (IMP::container)

GridD (IMP::algebra)

Optimizer (IMP::kernel)

Rotation3D (IMP::algebra)

WeightedProfileFitter (IMP::saxs)

ConnectivityCrossLinkMS (IMP.pmi.restraints.crosslinking)

GridIndexD (IMP::algebra)

OptimizerState (IMP::kernel)

RRT (IMP::kinematics)

WeightedSphereDistancePairScore (IMP::core)

ConnectivityRestraint (IMP.pmi.restraints.proteomics)

GridStates (IMP::em2d)

OptionParser (IMP.kernel)

RunInTempDir (IMP.test)

WeightMover (IMP::isd)

ConnectivityRestraint (IMP::core)

GSLOptimizer (IMP::gsl)

Order (IMP::domino)

S

WeightRestraint (IMP::isd)

ConnollySurfacePoint (IMP::algebra)

H

OrderedTypePairPredicate (IMP::core)

WeightScore (IMP::score_functor)

ConsecutivePairContainer (IMP::container)

OrderedTypeQuadPredicate (IMP::core)

SameResiduePairFilter (IMP::atom)

WormLikeChain (IMP::misc)

ConsecutivePairFilter (IMP::container)

Harmonic (IMP::core)

OrderedTypeSingletonPredicate (IMP::core)

SampleAssignmentContainer (IMP::domino)

WriteAssignmentContainer (IMP::domino)

ConstantPairPredicate (IMP::core)

Harmonic (IMP::score_functor)

OrderedTypeTripletPredicate (IMP::core)

SampledDensityMap (IMP::em)

WriteHDF5AssignmentContainer (IMP::domino)

ConstantQuadPredicate (IMP::core)

HarmonicDistancePairScore (IMP::core)

OrientedSoap (IMP::score_functor)

SampleObjects (IMP.pmi.sampling_tools)

WriteOptimizerState (IMP::display)

ConstantRestraint (IMP::core)

HarmonicLowerBound (IMP::core)

OrientedSoapPairScore (IMP::atom)

Sampler (IMP::kernel)

WritePDBOptimizerState (IMP::atom)

ConstantSingletonPredicate (IMP::core)

HarmonicLowerBound (IMP::score_functor)

OrPDBSelector (IMP::atom)

SaveLink (IMP::rmf)

Writer (IMP::display)

ConstantTripletPredicate (IMP::core)

HarmonicSphereDistancePairScore (IMP::core)

Output (IMP.pmi.output)

SaveOptimizerState (IMP::rmf)

WriterAdaptor (IMP::display)

Constraint (IMP::kernel)

HarmonicUpperBound (IMP::core)

P

SaveToConfigurationSetOptimizerState (IMP::kernel)

WriteRestraintScoresOptimizerState (IMP::core)

ConstVector (IMP::base)

HarmonicUpperBound (IMP::score_functor)

SAXSMultiStateModelScore (IMP::multi_state)

X

Container (IMP::kernel)

HarmonicUpperBoundSphereDiameterPairScore (IMP::core)

PackedAssignmentContainer (IMP::domino)

Scale (IMP::isd)

Context (IMP.parallel)

HarmonicUpperBoundSphereDistancePairScore (IMP::core)

PairConstraint (IMP::core)

ScopedAddCacheAttribute (IMP::kernel)

Xlink (IMP.EMageFit.buildxlinks)

Copy (IMP::atom)

HarmonicWell (IMP::core)

PairContainer (IMP::kernel)

ScopedSetAttribute (IMP::kernel)

XlinksDict (IMP.EMageFit.buildxlinks)

Cosine (IMP::core)

HasHigherCCC (IMP::em2d)

PairContainerAdaptor (IMP::kernel)

Score (IMP::score_functor)

XplorReaderWriter (IMP::em)

CoulombPairScore (IMP::atom)

HasLowerScore (IMP::em2d)

PairContainerSet (IMP::container)

ScoreAccumulator (IMP::kernel)

XYZ (IMP::core)

Covariance1DFunction (IMP::isd)

HeapAssignmentContainer (IMP::domino)

PairContainerStatistics (IMP::container)

ScoreFunction (IMP::em2d)

XYZDerivativeGeometry (IMP::core)

Cover (IMP::core)

HeapRecord (IMP.EMageFit.solutions_io)

PairGeometry (IMP::display)

ScoreState (IMP::kernel)

XYZDerivativesGeometry (IMP::core)

CoverBond (IMP::atom)

HierarchiesGeometry (IMP::atom)

PairListSubsetFilterTable (IMP::domino)

ScoreUnaryFunction (IMP::score_functor)

XYZR (IMP::core)

CoverRefined (IMP::core)

Hierarchy (IMP::core)

PairModifier (IMP::kernel)

ScoringFunction (IMP::kernel)

XYZRGeometry (IMP::core)

CPDBSelector (IMP::atom)

Hierarchy (IMP::atom)

PairPredicate (IMP::kernel)

ScoringFunctionAdaptor (IMP::kernel)

XYZRsGeometry (IMP::core)

CreateLogContext (IMP::base)

HierarchyCounter (IMP::core)

PairRestraint (IMP::core)

SecondaryStructureResidue (IMP::atom)

XYZStates (IMP::domino)

CrossLink (IMP.pmi.io)

HierarchyDatabase (IMP.pmi.tools)

PairsConstraint (IMP::container)

Segment3D (IMP::algebra)

d

CrossLinkData (IMP.pmi.io)

HierarchyGeometry (IMP::atom)

PairScore (IMP::kernel)

SegmentationParameters (IMP::em2d)

CrossLinkData (IMP::isd)

HierarchyLoadLink (IMP::rmf)

PairsGeometry (IMP::display)

SegmentGeometry (IMP::display)

dof (IMP.pmi.dof)

CrossLinkMS (IMP.pmi.nonmantained)

HierarchySaveLink (IMP::rmf)

PairsOptimizerState (IMP::container)

Selection (IMP::atom)

m

CrossLinkMSRestraint (IMP::isd)

HierarchyTraits (IMP::core)

PairsRestraint (IMP::container)

SelectionGeometry (IMP::atom)

CrossLinkTable (IMP.pmi.analysis)

HierarchyVisitor (IMP::core)

ParabolicFit2D (IMP::algebra)

Sequences (IMP.pmi.topology)

map (IMP::base)

CustomXYZR (IMP::misc)

HighDensityEmbedding (IMP::em)

Particle (IMP::kernel)

SerialMover (IMP::core)

p

CvEstimator (IMP.isd.TuneRex)

HistogramD (IMP::statistics)

ParticleAdaptor (IMP::kernel)

SetCheckState (IMP::base)

Cylinder3D (IMP::algebra)

History (IMP.isd.History)

ParticleEmbedding (IMP::statistics)

SetLogState (IMP::base)

piecewise_linear_distribution (IMP::base)

CylinderGeometry (IMP::display)

HybridMonteCarlo (IMP::isd)

ParticleIndexAdaptor (IMP::kernel)

SetLogTarget (IMP::base)

s

CysteineCrossLinkData (IMP::isd)

HydrogenPDBSelector (IMP::atom)

ParticleIndexesAdaptor (IMP::kernel)

SetNumberOfThreads (IMP::base)

set (IMP::base)

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