|
| CysteineCrossLinkRestraint (IMP::isd) |
| ParticleIndexPairsAdaptor (IMP::kernel) | SettingsData (IMP::multifit) |
|
| ParticleInputs (IMP::kernel) | SGEPESlaveArray (IMP.parallel) |
| AddBoolFlag (IMP::base) | Image (IMP::em2d) | ParticleOutputs (IMP::kernel) | SGEQsubSlaveArray (IMP.parallel) |
| AddFloatFlag (IMP::base) | Database2 (IMP.EMageFit.database) | ImageHeader (IMP::em) | ParticlesAdaptor (IMP::domino) | Shift (IMP::score_functor) |
| AddIntFlag (IMP::base) | DataObject (IMP::core) | ImageReaderWriter (IMP::em2d) | ParticlesDummyRestraint (IMP::em2d) | Showable (IMP::base) |
| AddScores (IMP::score_functor) | DataPointsAssignment (IMP::multifit) | IMPRestraints (IMP.modeller) | ParticleStates (IMP::domino) | SigmoidRestraintSphere (IMP::pmi) |
| AddStringFlag (IMP::base) | DecayPairContainerOptimizerState (IMP::misc) | ImproperSingletonScore (IMP::atom) | ParticleStatesTable (IMP::domino) | SimpleAssignmentsTable (IMP::domino) |
| AdvancedFlag (IMP::base) | Decorator (IMP::kernel) | InBoundingBox3DSingletonPredicate (IMP::core) | PartitionalClustering (IMP::statistics) | SimpleLoadLink (IMP::rmf) |
| Alignment (IMP.pmi.analysis) | DefaultEmbeddingD (IMP::algebra) | InContainerPairFilter (IMP::container) | PartitionalClusteringWithCenter (IMP::statistics) | SimpleSaveLink (IMP::rmf) |
| AlignmentClustering (IMP.multifit.cluster) | DeltaDistributionFunction (IMP::saxs) | InContainerQuadFilter (IMP::container) | PathLocalPlanner (IMP::kinematics) | Simplex (IMP::gsl) |
| AlignSymmetric (IMP::cnmultifit) | Demuxer (IMP.isd.demux_trajs) | InContainerSingletonFilter (IMP::container) | PCAAligner (IMP::em) | Simulator (IMP::atom) |
| AllBipartitePairContainer (IMP::container) | DenseFloatLogGridKD (IMP::algebra) | InContainerTripletFilter (IMP::container) | PCAFitRestraint (IMP::em) | SingleLinkage (IMP::em2d) |
| AllMol2Selector (IMP::atom) | DenseGrid3D (IMP::algebra) | IncrementalScoringFunction (IMP::core) | PCAFitRestraint (IMP::em2d) | SingletonConstraint (IMP::core) |
| AllPairContainer (IMP::container) | DenseGridStorageD (IMP::algebra) | Index (IMP::base) | PDBSelector (IMP::atom) | SingletonContainer (IMP::kernel) |
| AllPDBSelector (IMP::atom) | DenseIntLogGrid3D (IMP::algebra) | IndexException (IMP::base) | PermutationStates (IMP::domino) | SingletonContainerAdaptor (IMP::kernel) |
| AllSamePairPredicate (IMP::core) | DensityDataPoints (IMP::multifit) | IndexStates (IMP::domino) | Pipe (IMP.isd.utils) | SingletonContainerSet (IMP::container) |
| AllSameQuadPredicate (IMP::core) | DensityFillingRestraint (IMP::em) | IndexVector (IMP::base) | PivyWriter (IMP::display) | SingletonContainerStatistics (IMP::container) |
| AllSameSingletonPredicate (IMP::core) | DensityHeader (IMP::em) | InitialDockingFromXlinks (IMP.EMageFit.buildxlinks) | Plane3D (IMP::algebra) | SingletonGeometry (IMP::display) |
| AllSameTripletPredicate (IMP::core) | DensityMap (IMP::em) | InputAdaptor (IMP::base) | PlaneGeometry (IMP::display) | SingletonModifier (IMP::kernel) |
| AmbiguousCompositeRestraint (IMP.pmi.restraints.proteomics) | DependencyScoreState (IMP::domino) | InternalException (IMP::base) | Pointer (IMP::base) | SingletonPredicate (IMP::kernel) |
| AmbiguousNOERestraint (IMP::isd) | DerivativeAccumulator (IMP::kernel) | IntsOrder (IMP::em2d) | PointerMember (IMP::base) | SingletonRestraint (IMP::core) |
| AmbiguousRestraint (IMP::isd) | DerivativeCalculator (IMP::saxs) | IOException (IMP::base) | PointGeometry (IMP::display) | SingletonsConstraint (IMP::container) |
| Analysis (IMP.isd.Analysis) | DerivativesFromRefined (IMP::core) | IsCollisionPairPredicate (IMP::core) | PolarResamplingParameters (IMP::em2d) | SingletonScore (IMP::kernel) |
| AnalysisReplicaExchange0 (IMP.pmi.macros) | DerivativesToRefined (IMP::core) | IsosurfaceGeometry (IMP::display) | PolygonGeometry (IMP::display) | SingletonsGeometry (IMP::display) |
| AnchorsData (IMP::multifit) | DiameterRestraint (IMP::core) |
| PPDBSelector (IMP::atom) | SingletonsOptimizerState (IMP::container) |
| AndPDBSelector (IMP::atom) | Diffusion (IMP::atom) | Precision (IMP.pmi.analysis) | SingletonsRestraint (IMP::container) |
| Angle (IMP::atom) | Dihedral (IMP::atom) | JeffreysRestraint (IMP::isd) | PredicatePairsRestraint (IMP::container) | SingletonStatistical (IMP::score_functor) |
| AngleRestraint (IMP::core) | DihedralAngleRevoluteJoint (IMP::kinematics) | Joint (IMP::kinematics) | PredicateQuadsRestraint (IMP::container) | SkinSurfaceGeometry (IMP::display) |
| AngleSingletonScore (IMP::atom) | DihedralRestraint (IMP::core) | JPGImageReaderWriter (IMP::em2d) | PredicateSingletonScore (IMP::core) | Slave (IMP.parallel) |
| AngleTripletScore (IMP::core) | DihedralSingletonScore (IMP::atom) |
| PredicateSingletonsRestraint (IMP::container) | SlaveArray (IMP.parallel) |
| AngularVelocity (IMP::atom) | DirectorObjectChecker (IMP.test) | PredicateTripletsRestraint (IMP::container) | Slice (IMP::domino) |
| ApplicationTestCase (IMP.test) | DiscreteSampler (IMP::domino) | KClosePairsPairScore (IMP::core) | PrincipalComponentAnalysisD (IMP::algebra) | SmoothingFunction (IMP::atom) |
| Array (IMP::base) | DisjointSetsSubsetFilterTable (IMP::domino) | KernelParameters (IMP::em) | PrismaticJoint (IMP::kinematics) | Soap (IMP::score_functor) |
| AssemblyHeader (IMP::multifit) | DistanceFilter (IMP::em2d) | Key (IMP::kernel) | ProbabilisticAnchorGraph (IMP::multifit) | SoapPairFilter (IMP::atom) |
| Assignment (IMP::domino) | DistanceFilterTable (IMP::em2d) | KinematicForest (IMP::kinematics) | ProbabilisticSubsetFilterTable (IMP::domino) | SoftCylinderPairScore (IMP::misc) |
| AssignmentContainer (IMP::domino) | DistanceMask (IMP::em) | KinematicForestScoreState (IMP::kinematics) | ProcessOutput (IMP.pmi.output) | SoftSpherePairScore (IMP::core) |
| AssignmentsTable (IMP::domino) | DistancePairScore (IMP::core) | KinematicNode (IMP::kinematics) | Profile (IMP::saxs) | SolventAccessibleSurface (IMP::saxs) |
| Atom (IMP::atom) | DistancePairScore (IMP::score_functor) | KMeans (IMP::kmeans) | ProfileClustering (IMP::saxs) | SparseGrid3D (IMP::algebra) |
| AtomicCrossLinkMSRestraint (IMP::isd) | DistanceRestraint (IMP::core) |
| ProfileFitter (IMP::saxs) | SparseGridStorageD (IMP::algebra) |
| ATOMPDBSelector (IMP::atom) | DistributePairsScoreState (IMP::container) | Profiler (IMP::benchmark) | SparseSymmetricPairMemoizer (IMP::base) |
| AtomType (IMP::atom) | DistributeQuadsScoreState (IMP::container) | LabelGeometry (IMP::display) | ProjectingOptions (IMP::em2d) | SparseUnboundedGrid3D (IMP::algebra) |
| AttributeOptimizer (IMP::kernel) | DistributeSingletonsScoreState (IMP::container) | LangevinThermostatOptimizerState (IMP::atom) | ProjectingParameters (IMP::em2d) | SparseUnboundedGridD (IMP::algebra) |
| AttributeSingletonPredicate (IMP::core) | DistributeTripletsScoreState (IMP::container) | LeavesRefiner (IMP::core) | ProjectionFinder (IMP::em2d) | SphereD (IMP::algebra) |
| AverageDistanceLinkage (IMP::em2d) | Distribution (IMP::saxs) | LennardJones (IMP::atom) | ProjectionMask (IMP::em2d) | SphereDistance (IMP::score_functor) |
|
| DockOrder (IMP.EMageFit.buildxlinks) | LennardJonesPairScore (IMP::atom) | ProjectionParameters (IMP::em2d) | SphereDistancePairScore (IMP::core) |
| DOF (IMP::kinematics) | LessPairBySecond (IMP::em2d) | ProjectionParametersScoreState (IMP::em2d) | SphereDistanceToSingletonScore (IMP::core) |
| BackbonePDBSelector (IMP::atom) | DOFsSampler (IMP::kinematics) | Linear (IMP::core) | ProjectionStates (IMP::em2d) | SphereGeometry (IMP::display) |
| BallMover (IMP::core) | Domain (IMP::atom) | Linear1DFunction (IMP::isd) | ProteinKinematics (IMP::kinematics) | SpherePatch3D (IMP::algebra) |
| BallMover (IMP::symmetry) | DominoModel (IMP.EMageFit.domino_model) | LinearFit2D (IMP::algebra) | ProteinLigandAtomPairScore (IMP::atom) | SphericalVector3D (IMP::algebra) |
| BerendsenThermostatOptimizerState (IMP::atom) | DominoSampler (IMP::domino) | LinearLowerBound (IMP::score_functor) | ProteinLigandRestraint (IMP::atom) | SpiderHeader (IMP::em) |
| BinormalTerm (IMP::modeller) | Dope (IMP::score_functor) | LinearVelocity (IMP::atom) | ProteinsAnchorsSamplingSpace (IMP::multifit) | SpiderImageReaderWriter (IMP::em2d) |
| BivariateFunction (IMP::isd) | DopePairScore (IMP::atom) | ListAssignmentContainer (IMP::domino) | ProteomicsData (IMP::multifit) | SpiderMapReaderWriter (IMP::em) |
| Bond (IMP::atom) | DummyRestraint (IMP::em2d) | ListAssignmentsTable (IMP::domino) | ProteomicsEMAlignmentAtomic (IMP::multifit) | State (IMP::atom) |
| ForceFieldParameters::Bond (IMP::atom) | DummyRestraint (IMP::multifit) | ListPairContainer (IMP::container) | PseudoAtomicRestraint (IMP.pmi.restraints.stereochemistry) | StateAdaptor (IMP::misc) |
| BondAngleRevoluteJoint (IMP::kinematics) | DynamicListPairContainer (IMP::container) | ListQuadContainer (IMP::container) | PymolWriter (IMP::display) | Statistical (IMP::score_functor) |
| Bonded (IMP::atom) | DynamicListQuadContainer (IMP::container) | ListSingletonContainer (IMP::container) | PythonDirectedGraph (IMP::kernel) | StatisticalPairScore (IMP::core) |
| BondedPairFilter (IMP::atom) | DynamicListSingletonContainer (IMP::container) | ListSubsetFilterTable (IMP::domino) |
| Statistics (IMP.isd.Statistics) |
| BondEndpointsRefiner (IMP::atom) | DynamicListTripletContainer (IMP::container) | ListTripletContainer (IMP::container) | SteepestDescent (IMP::core) |
| BondGeometry (IMP::atom) | DynamicNearestNeighbor3D (IMP::algebra) | LoadLink (IMP::rmf) | QuadConstraint (IMP::core) | StereochemistryPairFilter (IMP::atom) |
| BondGraph (IMP::atom) |
| LocalPlanner (IMP::kinematics) | QuadContainer (IMP::kernel) | Subsequence (IMP.pmi.io) |
| BondPairContainer (IMP::atom) | LocalSlave (IMP.parallel) | QuadContainerAdaptor (IMP::kernel) | SubsequenceData (IMP.pmi.io) |
| BondsGeometry (IMP::atom) | EdgePairGeometry (IMP::core) | LogEmbeddingD (IMP::algebra) | QuadContainerSet (IMP::container) | Subset (IMP::domino) |
| BondSingletonScore (IMP::atom) | EdgePairsGeometry (IMP::core) | LogHolder (IMP.isd.demux_trajs) | QuadContainerStatistics (IMP::container) | SubsetFilter (IMP::domino) |
| BoundedGridRangeD (IMP::algebra) | ElasticNetworkRestraint (IMP.pmi.restraints.stereochemistry) | LognormalRestraint (IMP::isd) | QuadModifier (IMP::kernel) | SubsetFilterTable (IMP::domino) |
| BoundingBoxD (IMP::algebra) | ElementTable (IMP::atom) | LogPairScore (IMP::misc) | QuadPredicate (IMP::kernel) | SurfaceMeshGeometry (IMP::display) |
| BoundingBoxGeometry (IMP::display) | Ellipsoid3D (IMP::algebra) | LogWrapper (IMP::isd) | QuadraticClosePairsFinder (IMP::core) | SurfaceShellDensityMap (IMP::em) |
| BoxSweepClosePairsFinder (IMP::core) | EllipsoidGeometry (IMP::display) | LowestRefinedPairScore (IMP::misc) | QuadRestraint (IMP::core) | Switching (IMP::isd) |
| BranchAndBoundAssignmentsTable (IMP::domino) | Em2DRestraint (IMP::em2d) | LRUCache (IMP::base) | QuadsConstraint (IMP::container) | Symmetric (IMP::pmi) |
| BranchAndBoundSampler (IMP::domino) | Em2DRestraintParameters (IMP::em2d) |
| QuadScore (IMP::kernel) | System (IMP.pmi.topology) |
| BrownianDynamics (IMP::atom) | EM2DScore (IMP::em2d) | QuadsOptimizerState (IMP::container) | SystemBase (IMP.pmi.topology) |
| BuildModel (IMP.pmi.macros) | Embedding (IMP::statistics) | Manager (IMP.parallel) | QuadsRestraint (IMP::container) |
|
| BuildModel1 (IMP.pmi.macros) | EMReaderWriter (IMP::em) | MapDistanceTransform (IMP::em) | QuasiNewton (IMP::gsl) |
|
| Ensemble (IMP::multifit) | MapReaderWriter (IMP::em) |
| TableRefiner (IMP::core) |
| Entry (IMP.isd.Entry) | MarginalHBondRestraint (IMP::isd) | TALOSReader (IMP.isd.TALOSReader) |
| CAlphaPDBSelector (IMP::atom) | EnvelopeFitRestraint (IMP::em) | MarginalNOERestraint (IMP::isd) | RadialDistributionFunction (IMP::saxs) | TALOSRestraint (IMP::isd) |
| CappedAssignmentContainer (IMP::domino) | EnvelopePenetrationRestraint (IMP::em) | MasksManager (IMP::em2d) | RadiusDependentDistanceMask (IMP::em) | TempDir (IMP.test) |
| CBetaPDBSelector (IMP::atom) | EnvelopeScore (IMP::em) | Mass (IMP::atom) | RadiusDependentKernelParameters (IMP::em) | TestCase (IMP.test) |
| CenteredMat (IMP::em2d) | EqualitySubsetFilterTable (IMP::domino) | MasterCommunicator (IMP.parallel.master_communicator) | RadiusOfGyrationRestraint (IMP::multifit) | TextInput (IMP::base) |
| CenterOfMass (IMP::atom) | EquivalenceAndExclusionSubsetFilterTable (IMP::domino) | MatchTemplateResult (IMP::em2d) | RadiusOfGyrationRestraint (IMP::saxs) | TextOutput (IMP::base) |
| Centroid (IMP::core) | EquivalenceSubsetFilterTable (IMP::domino) | MaxVectorKDMetric (IMP::algebra) | RAII (IMP::base) | TextWriter (IMP::display) |
| CentroidOfRefined (IMP::core) | Error (IMP.parallel) | MCCGSampler (IMP::core) | RangeViewAssignmentContainer (IMP::domino) | TIFFImageReaderWriter (IMP::em2d) |
| Chain (IMP::atom) | EuclideanMetric (IMP::statistics) | MeanAbsoluteDifference (IMP::em2d) | ReadAssignmentContainer (IMP::domino) | Timer (IMP::base) |
| ChainPDBSelector (IMP::atom) | EuclideanVectorKDMetric (IMP::algebra) | Memoizer (IMP::base) | ReadHDF5AssignmentContainer (IMP::domino) | TopologyPlot (IMP.pmi.plotting.topology) |
| Charged (IMP::atom) | EvaluationState (IMP::kernel) | MergeTreeBuilder (IMP::multifit) | RecursiveAssignmentsTable (IMP::domino) | TopologyReader (IMP.pmi.topology) |
| CHARMMAtom (IMP::atom) | EventException (IMP::base) | Metric (IMP::statistics) | RecursivePartitionalClusteringEmbedding (IMP::statistics) | Transform (IMP::core) |
| CHARMMAtomTopology (IMP::atom) | EventPairsOptimizerState (IMP::container) | MetricClosePairsFinder (IMP::misc) | RecursivePartitionalClusteringMetric (IMP::statistics) | Transformation2D (IMP::algebra) |
| CHARMMBondEndpoint (IMP::atom) | EventQuadsOptimizerState (IMP::container) | MinimumPairRestraint (IMP::container) | RecursiveStates (IMP::domino) | Transformation3D (IMP::algebra) |
| CHARMMBondParameters (IMP::atom) | EventSingletonsOptimizerState (IMP::container) | MinimumPairScore (IMP::container) | RefCountChecker (IMP.test) | Transformation3DToText (IMP.EMageFit.imp_general.io) |
| CHARMMConnection (IMP::atom) | EventTripletsOptimizerState (IMP::container) | MinimumQuadRestraint (IMP::container) | Reference (IMP::core) | TransformationAndReflectionSymmetry (IMP::core) |
| CHARMMDihedralParameters (IMP::atom) | ExampleComplexRestraint (IMP::example) | MinimumQuadScore (IMP::container) | ReferenceFrame3D (IMP::algebra) | TransformationJoint (IMP::kinematics) |
| CharmmForceFieldRestraint (IMP.pmi.restraints.stereochemistry) | ExampleConstraint (IMP::example) | MinimumRestraint (IMP::core) | ReferenceFrameGeometry (IMP::display) | TransformationSymmetry (IMP::core) |
| CharmmForceFieldRestraint (IMP.pmi.restraints_new.stereochemistry) | ExampleDecorator (IMP::example) | MinimumRestraintScoreSubsetFilterTable (IMP::domino) | ReferenceFrameToText (IMP.EMageFit.imp_general.io) | TransformedDistancePairScore (IMP::core) |
| CHARMMIdealResidueTopology (IMP::atom) | ExampleObject (IMP::example) | MinimumSingletonRestraint (IMP::container) | RefinedPairsPairScore (IMP::core) | TransformMover (IMP::pmi) |
| CHARMMInternalCoordinate (IMP::atom) | ExamplePairScore (IMP::example) | MinimumSingletonScore (IMP::container) | Refiner (IMP::kernel) | Triangle3D (IMP::algebra) |
| CHARMMParameters (IMP::atom) | ExampleRestraint (IMP::example) | MinimumTripletRestraint (IMP::container) | Reflection3D (IMP::algebra) | TriangleGeometry (IMP::display) |
| CHARMMPatch (IMP::atom) | ExampleSingletonModifier (IMP::example) | MinimumTripletScore (IMP::container) | RegistrationResult (IMP::em2d) | TripletConstraint (IMP::core) |
| CHARMMResidueTopology (IMP::atom) | ExampleSubsetFilterTable (IMP::example) | Model (IMP::kernel) | RelativePositionMover (IMP::em2d) | TripletContainer (IMP::kernel) |
| CHARMMResidueTopologyBase (IMP::atom) | ExampleTemplateClassD (IMP::example) | ModelException (IMP::base) | RemoteError (IMP.parallel) | TripletContainerAdaptor (IMP::kernel) |
| CHARMMSegmentTopology (IMP::atom) | ExampleUnaryFunction (IMP::example) | ModellerRestraints (IMP.modeller) | RemoveRigidMotionOptimizerState (IMP::atom) | TripletContainerSet (IMP::container) |
| CHARMMStereochemistryRestraint (IMP::atom) | Exception (IMP::base) | ModelLoader (IMP.modeller) | RemoveTranslationOptimizerState (IMP::atom) | TripletContainerStatistics (IMP::container) |
| CHARMMTopology (IMP::atom) | ExcludedVolumeRestraint (IMP::core) | ModelObject (IMP::kernel) | ReplicaExchange (IMP.pmi.samplers) | TripletModifier (IMP::kernel) |
| ChecksScoreState (IMP::core) | ExcludedVolumeSphere (IMP.pmi.restraints.stereochemistry) | ModifierVisitor (IMP::core) | ReplicaExchange (IMP::mpi) | TripletPredicate (IMP::kernel) |
| ChiFreeScore (IMP::saxs) | ExclusionSubsetFilterTable (IMP::domino) | Mol2Selector (IMP::atom) | ReplicaExchange0 (IMP.pmi.macros) | TripletRestraint (IMP::core) |
| ChildrenRefiner (IMP::core) | ExclusiveConsecutivePairContainer (IMP::container) | MolCnSymmAxisDetector (IMP::cnmultifit) | Representation (IMP.pmi.representation) | TripletsConstraint (IMP::container) |
| ChimeraWriter (IMP::display) | ExclusiveConsecutivePairFilter (IMP::container) | MolecularDynamics (IMP::atom) | Representation (IMP::atom) | TripletScore (IMP::kernel) |
| ChiScore (IMP::saxs) | ExtendedGridIndexD (IMP::algebra) | MolecularDynamics (IMP.pmi.samplers) | RepulsiveDistancePairScore (IMP::isd) | TripletsOptimizerState (IMP::container) |
| ChiScoreLog (IMP::saxs) | EzRestraint (IMP::atom) | MolecularDynamics (IMP::isd) | Residue (IMP::atom) | TripletsRestraint (IMP::container) |
| ChiSquaredScore (IMP::em2d) |
| MolecularDynamicsMover (IMP::isd) | ResidueAngleRestraint (IMP.pmi.restraints.stereochemistry) | TruncatedHarmonic (IMP::core) |
| ChiSquareMetric (IMP::statistics) | Molecule (IMP::atom) | ResidueBondRestraint (IMP.pmi.restraints.stereochemistry) | Typed (IMP::core) |
| CloseBipartitePairContainer (IMP::container) | FFTFitting (IMP::multifit) | MonteCarlo (IMP.pmi.samplers) | ResidueDihedralRestraint (IMP.pmi.restraints.stereochemistry) | TypedPairScore (IMP::core) |
| ClosedCubicSpline (IMP::core) | FFTFittingOutput (IMP::multifit) | MonteCarlo (IMP::core) | ResidueRotamer (IMP::rotamer) |
|
| ClosePairContainer (IMP::container) | FilterGeometry (IMP::display) | MonteCarloMover (IMP::core) | ResidueType (IMP::atom) |
| ClosePairsFinder (IMP::core) | Fine2DRegistrationRestraint (IMP::em2d) | MonteCarloMoverResult (IMP::core) | Resolution (IMP::pmi) | UnaryFunction (IMP::kernel) |
| ClosePairsPairScore (IMP::core) | FitRestraint (IMP::em) | MonteCarloRelativeMoves (IMP.EMageFit.monte_carlo) | Restraint (IMP::kernel) | UnaryFunctionEvaluate (IMP::score_functor) |
| Clustering (IMP.pmi.analysis) | FittingSolutionRecord (IMP::multifit) | MonteCarloWithBasinHopping (IMP::core) | Restraint (IMP::saxs) | UnboundedGridRangeD (IMP::algebra) |
| ClusterSet (IMP::em2d) | FittingSolutions (IMP::em) | MonteCarloWithLocalOptimization (IMP::core) | RestraintCache (IMP::domino) | Uncertainty (IMP::pmi) |
| CnSymmAxisDetector (IMP::cnmultifit) | FittingStates (IMP::multifit) | MoveStatisticsScoreState (IMP::core) | RestraintGeometry (IMP::display) | UncheckedWeakPointer (IMP::base) |
| CoarseCARestraint (IMP.pmi.restraints_new.stereochemistry) | FixedRefiner (IMP::core) | MRCReaderWriter (IMP::em) | RestraintsAdaptor (IMP::kernel) | Undecorator (IMP::kernel) |
| CoarseCC (IMP::em) | FixedXYZ (IMP::algebra) | MSConnectivityRestraint (IMP::core) | RestraintScoreSubsetFilterTable (IMP::domino) | UniformBackboneSampler (IMP::kinematics) |
| CoarseCCatIntervals (IMP::em) | Flag (IMP::base) | MultipleBinormalRestraint (IMP::modeller) | RestraintSet (IMP::kernel) | UniformPrior (IMP::isd) |
| CoarseConvolution (IMP::em) | FloatIndex (IMP::kernel) | MultivariateFNormalSufficient (IMP::isd) | RestraintSetGeometry (IMP::display) | UnivariateFunction (IMP::isd) |
| CoinFlipPairPredicate (IMP::core) | FNormal (IMP::isd) | MyMetric (write_a_metric) | RestraintsScoringFunction (IMP::core) | UnorderedTypePairPredicate (IMP::core) |
| CoinFlipQuadPredicate (IMP::core) | ForceFieldParameters (IMP::atom) |
| ResultsDB (IMP.EMageFit.solutions_io) | UnorderedTypeQuadPredicate (IMP::core) |
| CoinFlipSingletonPredicate (IMP::core) | ForceSwitch (IMP::atom) | RevoluteJoint (IMP::kinematics) | UnorderedTypeSingletonPredicate (IMP::core) |
| CoinFlipTripletPredicate (IMP::core) | FormFactorTable (IMP::saxs) | NearestNeighborD (IMP::algebra) | RigidBodiesImageFitRestraint (IMP::em2d) | UnorderedTypeTripletPredicate (IMP::core) |
| CollisionCrossSection (IMP::em2d) | Fragment (IMP::atom) | NearestNeighborsClosePairsFinder (IMP::core) | RigidBodiesProfileHandler (IMP::saxs) | UsageException (IMP::base) |
| Color (IMP::display) | FretData (IMP::isd) | NeighborsTable (IMP::core) | RigidBody (IMP::core) |
|
| ColorChange (IMP.pmi.tools) | FretRestraint (IMP::isd) | NestedRigidBodyStates (IMP::domino) | RigidBodyDerivativeGeometry (IMP::core) |
| Colored (IMP::display) |
| NetworkError (IMP.parallel) | RigidBodyDerivativesGeometry (IMP::core) | Value (IMP::base) |
| CommandDispatcher (IMP.kernel) | NOERestraint (IMP::isd) | RigidBodyDiffusion (IMP::atom) | ValueException (IMP::base) |
| CommonEndpointPairFilter (IMP::misc) | Gaussian (IMP::core) | NoMoreSlavesError (IMP.parallel) | RigidBodyDistancePairScore (IMP::core) | Vector (IMP::base) |
| ComplementarityRestraint (IMP::multifit) | Gaussian3D (IMP::algebra) | NonAlternativePDBSelector (IMP::atom) | RigidBodyFrameGeometry (IMP::core) | VectorBaseD (IMP::algebra) |
| CompleteLinkage (IMP::em2d) | GaussianEMRestraint (IMP::isd) | NonCopyable (IMP::base) | RigidBodyFramesGeometry (IMP::core) | VectorD (IMP::algebra) |
| ComponentHeader (IMP::multifit) | GaussianProcessInterpolation (IMP::isd) | NonHydrogenMol2Selector (IMP::atom) | RigidBodyHierarchyGeometry (IMP::core) | VectorDEmbedding (IMP::statistics) |
| ComponentTopology (IMP.pmi.topology) | GaussianProcessInterpolationRestraint (IMP::isd) | NonRigidMember (IMP::core) | RigidBodyMember (IMP::core) | VectorKDMetric (IMP::algebra) |
| CompositeJoint (IMP::kinematics) | GaussianRestraint (IMP::isd) | NonWaterNonHydrogenPDBSelector (IMP::atom) | RigidBodyMover (IMP::symmetry) | VelocityScalingOptimizerState (IMP::atom) |
| CompositeRestraint (IMP.pmi.restraints.proteomics) | GeneralizedGuinierPorodFunction (IMP::isd) | NonWaterPDBSelector (IMP::atom) | RigidBodyMover (IMP::core) | VersionInfo (IMP::base) |
| CompositeRestraint (IMP::pmi) | GenericAttributeSingletonScore (IMP::core) | NormalizedSphereDistancePairScore (IMP::core) | RigidBodyStates (IMP::domino) | VolumeRestraint (IMP::core) |
| CompoundStates (IMP::domino) | GenericBoundingBox3DSingletonScore (IMP::core) | NormalMover (IMP::core) | RigidBodyTorque (IMP::core) | Voxel (IMP::em) |
| Cone3D (IMP::algebra) | GenericDistanceToSingletonScore (IMP::core) | NotPDBSelector (IMP::atom) | RigidBodyTunneler (IMP::core) |
|
| Configuration (IMP::kernel) | GeometricHash (IMP::multifit) | NPDBSelector (IMP::atom) | RigidBodyUmbrella (IMP::core) |
| ConfigurationSet (IMP::kernel) | GeometricPrimitiveD (IMP::algebra) | Nuisance (IMP::isd) | RigidClosePairsFinder (IMP::core) | WarningContext (IMP::base) |
| ConfigurationSetRMSDMetric (IMP::statistics) | Geometry (IMP::display) |
| RigidMember (IMP::core) | WaterPDBSelector (IMP::atom) |
| ConfigurationSetXYZEmbedding (IMP::statistics) | GeometryProcessor (IMP::display) | RotamerAngleTuple (IMP::rotamer) | WeakPointer (IMP::base) |
| ConjugateGradients (IMP.pmi.samplers) | GeometrySet (IMP::display) | Object (IMP::base) | RotamerCalculator (IMP::rotamer) | Weight (IMP::isd) |
| ConjugateGradients (IMP::gsl) | GetModelDensity (IMP.pmi.analysis) | OpenCubicSpline (IMP::core) | RotamerLibrary (IMP::rotamer) | WeightedDerivativesToRefined (IMP::core) |
| ConjugateGradients (IMP::core) | GridClosePairsFinder (IMP::core) | OpenCubicSpline (IMP::score_functor) | Rotation2D (IMP::algebra) | WeightedExcludedVolumeRestraint (IMP::multifit) |
| ConnectingPairContainer (IMP::container) | GridD (IMP::algebra) | Optimizer (IMP::kernel) | Rotation3D (IMP::algebra) | WeightedProfileFitter (IMP::saxs) |
| ConnectivityCrossLinkMS (IMP.pmi.restraints.crosslinking) | GridIndexD (IMP::algebra) | OptimizerState (IMP::kernel) | RRT (IMP::kinematics) | WeightedSphereDistancePairScore (IMP::core) |
| ConnectivityRestraint (IMP.pmi.restraints.proteomics) | GridStates (IMP::em2d) | OptionParser (IMP.kernel) | RunInTempDir (IMP.test) | WeightMover (IMP::isd) |
| ConnectivityRestraint (IMP::core) | GSLOptimizer (IMP::gsl) | Order (IMP::domino) |
| WeightRestraint (IMP::isd) |
| ConnollySurfacePoint (IMP::algebra) |
| OrderedTypePairPredicate (IMP::core) | WeightScore (IMP::score_functor) |
| ConsecutivePairContainer (IMP::container) | OrderedTypeQuadPredicate (IMP::core) | SameResiduePairFilter (IMP::atom) | WormLikeChain (IMP::misc) |
| ConsecutivePairFilter (IMP::container) | Harmonic (IMP::core) | OrderedTypeSingletonPredicate (IMP::core) | SampleAssignmentContainer (IMP::domino) | WriteAssignmentContainer (IMP::domino) |
| ConstantPairPredicate (IMP::core) | Harmonic (IMP::score_functor) | OrderedTypeTripletPredicate (IMP::core) | SampledDensityMap (IMP::em) | WriteHDF5AssignmentContainer (IMP::domino) |
| ConstantQuadPredicate (IMP::core) | HarmonicDistancePairScore (IMP::core) | OrientedSoap (IMP::score_functor) | SampleObjects (IMP.pmi.sampling_tools) | WriteOptimizerState (IMP::display) |
| ConstantRestraint (IMP::core) | HarmonicLowerBound (IMP::core) | OrientedSoapPairScore (IMP::atom) | Sampler (IMP::kernel) | WritePDBOptimizerState (IMP::atom) |
| ConstantSingletonPredicate (IMP::core) | HarmonicLowerBound (IMP::score_functor) | OrPDBSelector (IMP::atom) | SaveLink (IMP::rmf) | Writer (IMP::display) |
| ConstantTripletPredicate (IMP::core) | HarmonicSphereDistancePairScore (IMP::core) | Output (IMP.pmi.output) | SaveOptimizerState (IMP::rmf) | WriterAdaptor (IMP::display) |
| Constraint (IMP::kernel) | HarmonicUpperBound (IMP::core) |
| SaveToConfigurationSetOptimizerState (IMP::kernel) | WriteRestraintScoresOptimizerState (IMP::core) |
| ConstVector (IMP::base) | HarmonicUpperBound (IMP::score_functor) | SAXSMultiStateModelScore (IMP::multi_state) |
|
| Container (IMP::kernel) | HarmonicUpperBoundSphereDiameterPairScore (IMP::core) | PackedAssignmentContainer (IMP::domino) | Scale (IMP::isd) |
| Context (IMP.parallel) | HarmonicUpperBoundSphereDistancePairScore (IMP::core) | PairConstraint (IMP::core) | ScopedAddCacheAttribute (IMP::kernel) | Xlink (IMP.EMageFit.buildxlinks) |
| Copy (IMP::atom) | HarmonicWell (IMP::core) | PairContainer (IMP::kernel) | ScopedSetAttribute (IMP::kernel) | XlinksDict (IMP.EMageFit.buildxlinks) |
| Cosine (IMP::core) | HasHigherCCC (IMP::em2d) | PairContainerAdaptor (IMP::kernel) | Score (IMP::score_functor) | XplorReaderWriter (IMP::em) |
| CoulombPairScore (IMP::atom) | HasLowerScore (IMP::em2d) | PairContainerSet (IMP::container) | ScoreAccumulator (IMP::kernel) | XYZ (IMP::core) |
| Covariance1DFunction (IMP::isd) | HeapAssignmentContainer (IMP::domino) | PairContainerStatistics (IMP::container) | ScoreFunction (IMP::em2d) | XYZDerivativeGeometry (IMP::core) |
| Cover (IMP::core) | HeapRecord (IMP.EMageFit.solutions_io) | PairGeometry (IMP::display) | ScoreState (IMP::kernel) | XYZDerivativesGeometry (IMP::core) |
| CoverBond (IMP::atom) | HierarchiesGeometry (IMP::atom) | PairListSubsetFilterTable (IMP::domino) | ScoreUnaryFunction (IMP::score_functor) | XYZR (IMP::core) |
| CoverRefined (IMP::core) | Hierarchy (IMP::core) | PairModifier (IMP::kernel) | ScoringFunction (IMP::kernel) | XYZRGeometry (IMP::core) |
| CPDBSelector (IMP::atom) | Hierarchy (IMP::atom) | PairPredicate (IMP::kernel) | ScoringFunctionAdaptor (IMP::kernel) | XYZRsGeometry (IMP::core) |
| CreateLogContext (IMP::base) | HierarchyCounter (IMP::core) | PairRestraint (IMP::core) | SecondaryStructureResidue (IMP::atom) | XYZStates (IMP::domino) |
| CrossLink (IMP.pmi.io) | HierarchyDatabase (IMP.pmi.tools) | PairsConstraint (IMP::container) | Segment3D (IMP::algebra) |
|
| CrossLinkData (IMP.pmi.io) | HierarchyGeometry (IMP::atom) | PairScore (IMP::kernel) | SegmentationParameters (IMP::em2d) |
| CrossLinkData (IMP::isd) | HierarchyLoadLink (IMP::rmf) | PairsGeometry (IMP::display) | SegmentGeometry (IMP::display) | dof (IMP.pmi.dof) |
| CrossLinkMS (IMP.pmi.nonmantained) | HierarchySaveLink (IMP::rmf) | PairsOptimizerState (IMP::container) | Selection (IMP::atom) |
|
| CrossLinkMSRestraint (IMP::isd) | HierarchyTraits (IMP::core) | PairsRestraint (IMP::container) | SelectionGeometry (IMP::atom) |
| CrossLinkTable (IMP.pmi.analysis) | HierarchyVisitor (IMP::core) | ParabolicFit2D (IMP::algebra) | Sequences (IMP.pmi.topology) | map (IMP::base) |
| CustomXYZR (IMP::misc) | HighDensityEmbedding (IMP::em) | Particle (IMP::kernel) | SerialMover (IMP::core) |
|
| CvEstimator (IMP.isd.TuneRex) | HistogramD (IMP::statistics) | ParticleAdaptor (IMP::kernel) | SetCheckState (IMP::base) |
| Cylinder3D (IMP::algebra) | History (IMP.isd.History) | ParticleEmbedding (IMP::statistics) | SetLogState (IMP::base) | piecewise_linear_distribution (IMP::base) |
| CylinderGeometry (IMP::display) | HybridMonteCarlo (IMP::isd) | ParticleIndexAdaptor (IMP::kernel) | SetLogTarget (IMP::base) |
|
| CysteineCrossLinkData (IMP::isd) | HydrogenPDBSelector (IMP::atom) | ParticleIndexesAdaptor (IMP::kernel) | SetNumberOfThreads (IMP::base) |
| | | | set (IMP::base) |
| | | | |
