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IMP
2.4.0
The Integrative Modeling Platform
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IMP
2.4.0
The Integrative Modeling Platform
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Removes rigid translation from the particles. More...
#include <IMP/atom/RemoveTranslationOptimizerState.h>
Inheritance diagram for IMP::atom::RemoveTranslationOptimizerState:Removes rigid translation from the particles.
Recenters the bunch of particles by putting the very first particle at the origin and rigidly translating all the others.
Definition at line 23 of file RemoveTranslationOptimizerState.h.
Public Member Functions | |
| RemoveTranslationOptimizerState (kernel::Model *m, kernel::ParticleIndexesAdaptor pis) | |
| virtual std::string | get_type_name () const |
| virtual ::IMP::base::VersionInfo | get_version_info () const |
| Get information about the module and version of the object. More... | |
| void | remove_translation () const |
| Remove translation now. More... | |
| void | set_particles (const kernel::Particles &pis) |
| Set the particles to use. More... | |
| Public Member Functions inherited from IMP::kernel::OptimizerState | |
| OptimizerState (kernel::Model *m, std::string name) | |
| unsigned int | get_number_of_updates () const |
| Return the number of times update has been called. More... | |
| Optimizer * | get_optimizer () const |
| unsigned int | get_period () const |
| virtual void | reset () |
| virtual void | set_is_optimizing (bool) |
| void | set_number_of_updates (unsigned int n) |
| Set the counter. More... | |
| void | set_period (unsigned int p) |
| virtual void | update () |
| Called when the Optimizer accepts a new conformation. More... | |
| void | update_always () |
| Public Member Functions inherited from IMP::kernel::ModelObject | |
| ModelObject (kernel::Model *m, std::string name) | |
| bool | get_has_dependencies () const |
| Return whether this object has dependencies computed. More... | |
| bool | get_has_required_score_states () const |
| Return whether score states are computed. More... | |
| ModelObjectsTemp | get_inputs () const |
| ModelObjectsTemps | get_interactions () const |
| Get the interacting sets induced by this ModelObject. More... | |
| Model * | get_model () const |
| ModelObjectsTemp | get_outputs () const |
| const ScoreStatesTemp & | get_required_score_states () const |
| Get the score states that are ancestors of this in the dependency graph. More... | |
| void | set_has_dependencies (bool tf) |
| Either invalidate the dependencies or ensure they are correct. More... | |
| void | set_has_required_score_states (bool tf) |
| Compute the required score states. More... | |
| Public Member Functions inherited from IMP::base::Object | |
| virtual void | clear_caches () |
| CheckLevel | get_check_level () const |
| LogLevel | get_log_level () const |
| void | set_check_level (CheckLevel l) |
| void | set_log_level (LogLevel l) |
| Set the logging level used in this object. More... | |
| void | set_was_used (bool tf) const |
| void | show (std::ostream &out=std::cout) const |
| const std::string & | get_name () const |
| void | set_name (std::string name) |
Protected Member Functions | |
| virtual void | do_update (unsigned int call) |
| Protected Member Functions inherited from IMP::kernel::OptimizerState | |
| virtual ModelObjectsTemp | do_get_inputs () const |
| virtual ModelObjectsTemp | do_get_outputs () const |
| virtual void | do_set_is_optimizing (bool) |
| Protected Member Functions inherited from IMP::kernel::ModelObject | |
| virtual ModelObjectsTemps | do_get_interactions () const |
| virtual void | handle_set_has_required_score_states (bool) |
| Protected Member Functions inherited from IMP::base::Object | |
| Object (std::string name) | |
| Construct an object with the given name. More... | |
| virtual void | do_destroy () |
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protectedvirtual |
This method is called every get_period() update calls. The number of times this method has been called since the last reset or start of the optimization run is passed.
Reimplemented from IMP::kernel::OptimizerState.
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virtual |
Get information about the module and version of the object.
Reimplemented from IMP::base::Object.
Definition at line 34 of file RemoveTranslationOptimizerState.h.
| void IMP::atom::RemoveTranslationOptimizerState::remove_translation | ( | ) | const |
Remove translation now.
| void IMP::atom::RemoveTranslationOptimizerState::set_particles | ( | const kernel::Particles & | pis | ) |
Set the particles to use.
Definition at line 29 of file RemoveTranslationOptimizerState.h.