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IMP
2.4.0
The Integrative Modeling Platform
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IMP
2.4.0
The Integrative Modeling Platform
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Utility functions to handle IO. More...
Utility functions to handle IO.
Classes | |
| class | ReferenceFrameToText |
| Transform a IMP reference frame into parseable output. More... | |
| class | Transformation3DToText |
| Parseable output for a IMP Transformation3D. More... | |
Functions | |
| def | get_particles_from_points |
| Simply creates IMP particles from a set of 2D points model - is the model to store the particles. More... | |
| def | imp_info |
| Returns text with the time and information about the modules employed imp_modules is the set of modules whose infos are requested. More... | |
| def | read_reference_frames |
| Read the reference frames contained in a solutions file from sampling n is the maximum number of ref frames to read. More... | |
| def | read_transforms |
| Read a file of alg.Transformation3D. More... | |
| def | show_model_info |
| Prints information about the representation Prints the number of components (hierarchies), its children, and information about the chains and rigid bodies. More... | |
| def | write_hierarchy_to_chimera |
| Writes a hierarchy contained in h to the file fn. More... | |
| def | write_particles_as_text |
| Writes a set of particles with coordinates to a file. More... | |
| def | write_particles_to_chimera |
| Writes a bunch o particles to the file fn It is assumed that the particles can be decorated with XYZR. More... | |
| def | write_pdb_for_reference_frames |
| Read the PDB files, apply reference frames to them, and write a pdb. More... | |
| def | write_points_to_chimera |
| Writes a bunch o particles to the file fn It is assumed that the particles can be decorated with XYZR. More... | |
| def | write_transforms |
| Write a file with the Transformation3Ds contained in Ts. More... | |
| def | write_vectors_in_multifit2_format |
| writes a text files in the format required for point alignment in multifit2 More... | |
| def | write_vectors_to_chimera |
| Writes vectors as points in chimera. More... | |
| def | write_xyzrs_to_chimera |
| Writes a bunch o particles to the file fn It is assumed that the particles can be decorated with XYZR. More... | |
| def IMP.EMageFit.imp_general.io.get_particles_from_points | ( | points, | |
| model | |||
| ) |
| def IMP.EMageFit.imp_general.io.imp_info | ( | imp_modules = None | ) |
| def IMP.EMageFit.imp_general.io.read_reference_frames | ( | fn, | |
n = 10 |
|||
| ) |
| def IMP.EMageFit.imp_general.io.read_transforms | ( | fn, | |
n = False |
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| ) |
| def IMP.EMageFit.imp_general.io.show_model_info | ( | model, | |
| assembly, | |||
| components_rbs | |||
| ) |
| def IMP.EMageFit.imp_general.io.write_hierarchy_to_chimera | ( | h, | |
| fn | |||
| ) |
| def IMP.EMageFit.imp_general.io.write_particles_as_text | ( | leaves, | |
| fn_output | |||
| ) |
| def IMP.EMageFit.imp_general.io.write_particles_to_chimera | ( | ps, | |
| fn, | |||
name = 'particles' |
|||
| ) |
| def IMP.EMageFit.imp_general.io.write_pdb_for_reference_frames | ( | fn_pdbs, | |
| refs_texts, | |||
| fn_output | |||
| ) |
| def IMP.EMageFit.imp_general.io.write_points_to_chimera | ( | points, | |
| radius, | |||
| fn, | |||
name = 'points' |
|||
| ) |
| def IMP.EMageFit.imp_general.io.write_transforms | ( | Ts, | |
| fn | |||
| ) |
| def IMP.EMageFit.imp_general.io.write_vectors_in_multifit2_format | ( | vs, | |
| fn_output | |||
| ) |
| def IMP.EMageFit.imp_general.io.write_vectors_to_chimera | ( | vs, | |
| radius, | |||
| fn, | |||
name = 'vectors' |
|||
| ) |