IMP
2.4.0
The Integrative Modeling Platform
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A decorator for a representation. More...
#include <IMP/atom/Representation.h>
A decorator for a representation.
It stores a number of copies of its sub hierarchy each with an associated resolution. You can use it to get the representation at a given resolution.
Definition at line 40 of file Representation.h.
Public Member Functions | |
Representation (::IMP::kernel::Model *m,::IMP::kernel::ParticleIndex id) | |
Representation (const IMP::kernel::ParticleAdaptor &d) | |
void | add_representation (kernel::ParticleIndexAdaptor rep, RepresentationType type=BALLS, double resolution=-1) |
Add the representation for the given resolution. More... | |
Hierarchy | get_representation (double resolution, RepresentationType type=BALLS) |
Hierarchies | get_representations (RepresentationType type=BALLS) |
Return all children at all resolutions. More... | |
Floats | get_resolutions (RepresentationType type=BALLS) const |
void | show (std::ostream &out=std::cout) const |
Public Member Functions inherited from IMP::atom::Hierarchy | |
Hierarchy (kernel::Model *m, kernel::ParticleIndex pi) | |
Hierarchy (kernel::ParticleAdaptor pi) | |
Hierarchy () | |
null constructor More... | |
Hierarchy (IMP::core::Hierarchy h) | |
The traits must match. More... | |
void | add_child (Hierarchy o) |
Add a child and check that the types are appropriate. More... | |
Hierarchy | get_child (unsigned int i) const |
Hierarchies | get_children () const |
Return the children in the order they were added. More... | |
template<class C > | |
C | get_children () const |
Get the children in a container of your choosing, eg kernel::ParticlesTemp. More... | |
bool | get_is_valid (bool print_info) const |
Return true if the hierarchy is valid. More... | |
Hierarchy | get_parent () const |
void | show (std::ostream &out=std::cout) const |
Atom | get_as_atom () const |
Residue | get_as_residue () const |
Chain | get_as_chain () const |
Molecule | get_as_molecule () const |
Domain | get_as_domain () const |
Fragment | get_as_fragment () const |
core::XYZ | get_as_xyz () const |
core::XYZR | get_as_xyzr () const |
Mass | get_as_mass () const |
State | get_as_state () const |
Public Member Functions inherited from IMP::core::Hierarchy | |
Hierarchy (const IMP::kernel::ParticleAdaptor &d, const HierarchyTraits &tr=get_default_traits()) | |
Hierarchy (::IMP::kernel::Model *m,::IMP::kernel::ParticleIndex id, const HierarchyTraits &tr=get_default_traits()) | |
void | add_child (Hierarchy h) const |
void | add_child_at (Hierarchy h, unsigned int pos) |
void | clear_children () |
Hierarchy | get_child (unsigned int i) const |
kernel::ParticleIndex | get_child_index (unsigned int i) const |
int | get_child_index () const |
Return i such that get_parent().get_child(i) == this More... | |
GenericHierarchies | get_children () const |
kernel::ParticleIndexes | get_children_indexes () const |
const DecoratorTraits & | get_decorator_traits () const |
unsigned int | get_number_of_children () const |
Hierarchy | get_parent () const |
HierarchyTraits | get_traits () |
void | remove_child (unsigned int i) |
void | remove_child (Hierarchy h) |
void | show (std::ostream &out=std::cout) const |
Public Member Functions inherited from IMP::kernel::Decorator | |
bool | get_is_valid () const |
Model * | get_model () const |
Returns the Model containing the particle. More... | |
Particle * | get_particle () const |
Returns the particle decorated by this decorator. More... | |
ParticleIndex | get_particle_index () const |
Returns the particle index decorated by this decorator. More... | |
operator Particle * () const | |
operator ParticleIndex () const | |
Particle * | operator-> () const |
Additional Inherited Members | |
Public Types inherited from IMP::core::Hierarchy | |
typedef HierarchyTraits | DecoratorTraits |
Protected Member Functions inherited from IMP::kernel::Decorator | |
Decorator (Model *m, ParticleIndex pi) | |
Decorator (ParticleAdaptor p) | |
void IMP::atom::Representation::add_representation | ( | kernel::ParticleIndexAdaptor | rep, |
RepresentationType | type = BALLS , |
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double | resolution = -1 |
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Add the representation for the given resolution.
If the resolution is not given it is computed using get_resolution(). Currently only a type of 'BALLS' is supported; eventually, other types of representation may be supported, eg Gaussians or density maps.
Hierarchy IMP::atom::Representation::get_representation | ( | double | resolution, |
RepresentationType | type = BALLS |
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) |
Return the children at the resolution closest to resolution
of the passed type.
Hierarchies IMP::atom::Representation::get_representations | ( | RepresentationType | type = BALLS | ) |
Return all children at all resolutions.
Floats IMP::atom::Representation::get_resolutions | ( | RepresentationType | type = BALLS | ) | const |
Return a list of all resolutions that are available for a specific RepresentationType.
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Setup the particle so it can be used with this decorator.
Definition at line 50 of file Representation.h.
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static |
For testing only. Will go away. Setup the particle so that it can be used with this decorator
Definition at line 52 of file Representation.h.
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static |
Definition at line 52 of file Representation.h.