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IMP
2.4.0
The Integrative Modeling Platform
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IMP
2.4.0
The Integrative Modeling Platform
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A container which contains all consecutive particle pairs from an input list. More...
#include <IMP/container/ConsecutivePairContainer.h>
Inheritance diagram for IMP::container::ConsecutivePairContainer:A container which contains all consecutive particle pairs from an input list.
If it is assumed that each particle is in at most one such container, then ExclusiveConsecutivePairContainer should be used instead, since it is faster when doing certain computations.
Also see ConsecutivePairFilter.
Definition at line 29 of file ConsecutivePairContainer.h.
Public Member Functions | |
| ConsecutivePairContainer (const kernel::ParticlesTemp &ps, std::string name="ConsecutivePairContainer%1%") | |
| Get the individual particles from the passed SingletonContainer. More... | |
| template<class F > | |
| void | apply_generic (F *f) const |
| apply to each item in container More... | |
| void | do_apply (const PairModifier *sm) const |
| virtual kernel::ModelObjectsTemp | do_get_inputs () const |
| virtual kernel::ParticleIndexes | get_all_possible_indexes () const |
| Get contained particles. More... | |
| virtual kernel::ParticleIndexPairs | get_indexes () const |
| virtual kernel::ParticleIndexPairs | get_range_indexes () const |
| virtual std::string | get_type_name () const |
| virtual ::IMP::base::VersionInfo | get_version_info () const |
| Get information about the module and version of the object. More... | |
| Public Member Functions inherited from IMP::kernel::PairContainer | |
| void | apply (const PairModifier *sm) const |
| Apply a SingletonModifier to the contents. More... | |
| void | apply_generic (const PairModifier *m) const |
| Just use apply() in the base class. More... | |
| const kernel::ParticleIndexPairs & | get_contents () const |
| unsigned int | get_number_of_particle_pairs () const |
| kernel::ParticlePair | get_particle_pair (unsigned int i) const |
| kernel::ParticlePairsTemp | get_particle_pairs () const |
| Public Member Functions inherited from IMP::kernel::Container | |
| ModelObjectsTemp | do_get_outputs () const |
| containers don't have outputs More... | |
| std::size_t | get_contents_hash () const |
| virtual bool | get_is_decomposable () const |
| Public Member Functions inherited from IMP::kernel::ModelObject | |
| ModelObject (kernel::Model *m, std::string name) | |
| bool | get_has_dependencies () const |
| Return whether this object has dependencies computed. More... | |
| bool | get_has_required_score_states () const |
| Return whether score states are computed. More... | |
| ModelObjectsTemp | get_inputs () const |
| ModelObjectsTemps | get_interactions () const |
| Get the interacting sets induced by this ModelObject. More... | |
| Model * | get_model () const |
| ModelObjectsTemp | get_outputs () const |
| const ScoreStatesTemp & | get_required_score_states () const |
| Get the score states that are ancestors of this in the dependency graph. More... | |
| void | set_has_dependencies (bool tf) |
| Either invalidate the dependencies or ensure they are correct. More... | |
| void | set_has_required_score_states (bool tf) |
| Compute the required score states. More... | |
| Public Member Functions inherited from IMP::base::Object | |
| virtual void | clear_caches () |
| CheckLevel | get_check_level () const |
| LogLevel | get_log_level () const |
| void | set_check_level (CheckLevel l) |
| void | set_log_level (LogLevel l) |
| Set the logging level used in this object. More... | |
| void | set_was_used (bool tf) const |
| void | show (std::ostream &out=std::cout) const |
| const std::string & | get_name () const |
| void | set_name (std::string name) |
Protected Member Functions | |
| virtual std::size_t | do_get_contents_hash () const |
| Protected Member Functions inherited from IMP::kernel::PairContainer | |
| PairContainer (kernel::Model *m, std::string name="PairContainer %1%") | |
| virtual bool | do_get_provides_access () const |
| Protected Member Functions inherited from IMP::kernel::Container | |
| Container (kernel::Model *m, std::string name="Container %1%") | |
| Protected Member Functions inherited from IMP::kernel::ModelObject | |
| virtual ModelObjectsTemps | do_get_interactions () const |
| virtual void | handle_set_has_required_score_states (bool) |
| Protected Member Functions inherited from IMP::base::Object | |
| Object (std::string name) | |
| Construct an object with the given name. More... | |
| virtual void | do_destroy () |
Additional Inherited Members | |
| Public Types inherited from IMP::kernel::PairContainer | |
| typedef kernel::ParticleIndexPair | ContainedIndexType |
| typedef kernel::ParticleIndexPairs | ContainedIndexTypes |
| typedef kernel::ParticlePair | ContainedType |
| typedef kernel::ParticlePairsTemp | ContainedTypes |
| typedef PairModifier | Modifier |
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typedef const kernel::ParticleIndexPair & | PassContainedIndexType |
| IMP::container::ConsecutivePairContainer::ConsecutivePairContainer | ( | const kernel::ParticlesTemp & | ps, |
| std::string | name = "ConsecutivePairContainer%1%" |
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| ) |
Get the individual particles from the passed SingletonContainer.
| void IMP::container::ConsecutivePairContainer::apply_generic | ( | F * | f | ) | const |
apply to each item in container
Definition at line 53 of file ConsecutivePairContainer.h.
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Get any Particle, Container or other ModelObjects read by this during evaluation. If you read everything in a container, you can just return that container.
Implements IMP::kernel::ModelObject.
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Get contained particles.
Get a list of all particles contained in this one, given that the input containers are up to date.
Implements IMP::kernel::Container.
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Get all the indexes contained in the container.
This should be protected but isn't for compatibility reasons.
External callers should use get_contents().
Implements IMP::kernel::PairContainer.
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Get all the indexes that might possibly be contained in the container, useful with dynamic containers. For example, with a container::ClosePairContainer, this is the list of all pairs taken from input list (those that are far apart in addition to those that are close).
Implements IMP::kernel::PairContainer.
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Get information about the module and version of the object.
Reimplemented from IMP::base::Object.
Definition at line 67 of file ConsecutivePairContainer.h.