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IMP
2.4.0
The Integrative Modeling Platform
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IMP
2.4.0
The Integrative Modeling Platform
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Find all nearby pairs by sweeping the bounding boxes. More...
#include <IMP/core/BoxSweepClosePairsFinder.h>
Inheritance diagram for IMP::core::BoxSweepClosePairsFinder:Find all nearby pairs by sweeping the bounding boxes.
This method is much faster than the quadratic one when there are are large sets of points.
The class BoxSweepClosePairsFinder requires CGAL in order to function.
Definition at line 24 of file BoxSweepClosePairsFinder.h.
Public Member Functions | |
| virtual kernel::ModelObjectsTemp | do_get_inputs (kernel::Model *m, const kernel::ParticleIndexes &pis) const |
| virtual IntPairs | get_close_pairs (const algebra::BoundingBox3Ds &bbs) const |
| virtual IntPairs | get_close_pairs (const algebra::BoundingBox3Ds &bas, const algebra::BoundingBox3Ds &bbs) const |
| virtual kernel::ParticleIndexPairs | get_close_pairs (kernel::Model *m, const kernel::ParticleIndexes &pc) const |
| virtual kernel::ParticleIndexPairs | get_close_pairs (kernel::Model *m, const kernel::ParticleIndexes &pca, const kernel::ParticleIndexes &pcb) const |
| virtual std::string | get_type_name () const |
| virtual ::IMP::base::VersionInfo | get_version_info () const |
| Get information about the module and version of the object. More... | |
| Public Member Functions inherited from IMP::core::ClosePairsFinder | |
| ClosePairsFinder (std::string name) | |
| kernel::ParticlePairsTemp | get_close_pairs (const kernel::ParticlesTemp &pc) const |
| kernel::ParticlePairsTemp | get_close_pairs (const kernel::ParticlesTemp &pca, const kernel::ParticlesTemp &pcb) const |
| virtual void | set_distance (double d) |
| double | get_distance () const |
| void | remove_pair_filter (PairPredicate *d) |
| void | remove_pair_filters (const PairPredicates &d) |
| void | set_pair_filters (const PairPredicates &ps) |
| void | set_pair_filters_order (const PairPredicates &objs) |
| unsigned int | add_pair_filter (PairPredicate *obj) |
| void | add_pair_filters (const PairPredicates &objs) |
| void | clear_pair_filters () |
| unsigned int | get_number_of_pair_filters () const |
| bool | get_has_pair_filters () |
| PairPredicate * | get_pair_filter (unsigned int i) const |
| PairPredicates | get_pair_filters () const |
| void | reserve_pair_filters (unsigned int sz) |
| Public Member Functions inherited from IMP::kernel::ParticleInputs | |
| virtual ContainersTemp | get_input_containers (Particle *p) const |
| virtual ParticlesTemp | get_input_particles (Particle *p) const |
| ModelObjectsTemp | get_inputs (kernel::Model *m, const ParticleIndexes &pis) const |
| Public Member Functions inherited from IMP::base::Object | |
| virtual void | clear_caches () |
| CheckLevel | get_check_level () const |
| LogLevel | get_log_level () const |
| void | set_check_level (CheckLevel l) |
| void | set_log_level (LogLevel l) |
| Set the logging level used in this object. More... | |
| void | set_was_used (bool tf) const |
| void | show (std::ostream &out=std::cout) const |
| const std::string & | get_name () const |
| void | set_name (std::string name) |
Additional Inherited Members | |
| Protected Member Functions inherited from IMP::base::Object | |
| Object (std::string name) | |
| Construct an object with the given name. More... | |
| virtual void | do_destroy () |
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virtual |
Overload this method to specify the inputs.
Reimplemented from IMP::kernel::ParticleInputs.
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virtual |
Get information about the module and version of the object.
Reimplemented from IMP::base::Object.
Definition at line 48 of file BoxSweepClosePairsFinder.h.