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IMP
2.4.0
The Integrative Modeling Platform
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IMP
2.4.0
The Integrative Modeling Platform
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A decorator for keeping track of copies of a molecule. More...
#include <IMP/atom/Copy.h>
Inheritance diagram for IMP::atom::Copy:A decorator for keeping track of copies of a molecule.
This decorator is for differentiating and keeping track of identity when there are multiple copies of molecule in the system. It should only be applied to Molecule particles.
Public Member Functions | |
| Copy (::IMP::kernel::Model *m,::IMP::kernel::ParticleIndex id) | |
| Copy (const IMP::kernel::ParticleAdaptor &d) | |
| int | get_copy_index () const |
| void | show (std::ostream &out=std::cout) const |
| Public Member Functions inherited from IMP::atom::Molecule | |
| Molecule (::IMP::kernel::Model *m,::IMP::kernel::ParticleIndex id) | |
| Molecule (const IMP::kernel::ParticleAdaptor &d) | |
| void | show (std::ostream &out=std::cout) const |
| Public Member Functions inherited from IMP::atom::Hierarchy | |
| Hierarchy (kernel::Model *m, kernel::ParticleIndex pi) | |
| Hierarchy (kernel::ParticleAdaptor pi) | |
| Hierarchy () | |
| null constructor More... | |
| Hierarchy (IMP::core::Hierarchy h) | |
| The traits must match. More... | |
| void | add_child (Hierarchy o) |
| Add a child and check that the types are appropriate. More... | |
| Hierarchy | get_child (unsigned int i) const |
| Hierarchies | get_children () const |
| Return the children in the order they were added. More... | |
| template<class C > | |
| C | get_children () const |
| Get the children in a container of your choosing, eg kernel::ParticlesTemp. More... | |
| bool | get_is_valid (bool print_info) const |
| Return true if the hierarchy is valid. More... | |
| Hierarchy | get_parent () const |
| void | show (std::ostream &out=std::cout) const |
| Atom | get_as_atom () const |
| Residue | get_as_residue () const |
| Chain | get_as_chain () const |
| Molecule | get_as_molecule () const |
| Domain | get_as_domain () const |
| Fragment | get_as_fragment () const |
| core::XYZ | get_as_xyz () const |
| core::XYZR | get_as_xyzr () const |
| Mass | get_as_mass () const |
| State | get_as_state () const |
| Public Member Functions inherited from IMP::core::Hierarchy | |
| Hierarchy (const IMP::kernel::ParticleAdaptor &d, const HierarchyTraits &tr=get_default_traits()) | |
| Hierarchy (::IMP::kernel::Model *m,::IMP::kernel::ParticleIndex id, const HierarchyTraits &tr=get_default_traits()) | |
| void | add_child (Hierarchy h) const |
| void | add_child_at (Hierarchy h, unsigned int pos) |
| void | clear_children () |
| Hierarchy | get_child (unsigned int i) const |
| kernel::ParticleIndex | get_child_index (unsigned int i) const |
| int | get_child_index () const |
Return i such that get_parent().get_child(i) == this More... | |
| GenericHierarchies | get_children () const |
| kernel::ParticleIndexes | get_children_indexes () const |
| const DecoratorTraits & | get_decorator_traits () const |
| unsigned int | get_number_of_children () const |
| Hierarchy | get_parent () const |
| HierarchyTraits | get_traits () |
| void | remove_child (unsigned int i) |
| void | remove_child (Hierarchy h) |
| void | show (std::ostream &out=std::cout) const |
| Public Member Functions inherited from IMP::kernel::Decorator | |
| bool | get_is_valid () const |
| Model * | get_model () const |
| Returns the Model containing the particle. More... | |
| Particle * | get_particle () const |
| Returns the particle decorated by this decorator. More... | |
| ParticleIndex | get_particle_index () const |
| Returns the particle index decorated by this decorator. More... | |
| operator Particle * () const | |
| operator ParticleIndex () const | |
| Particle * | operator-> () const |
Additional Inherited Members | |
| Public Types inherited from IMP::core::Hierarchy | |
| typedef HierarchyTraits | DecoratorTraits |
| Protected Member Functions inherited from IMP::kernel::Decorator | |
| Decorator (Model *m, ParticleIndex pi) | |
| Decorator (ParticleAdaptor p) | |
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