IMP  2.4.0
The Integrative Modeling Platform
Public Member Functions | Protected Member Functions | List of all members
IMP::core::NeighborsTable Class Reference

#include <IMP/core/NeighborsTable.h>

+ Inheritance diagram for IMP::core::NeighborsTable:

Detailed Description

Maintain a table that can be used to look up the neighbors of particles. That is, you can efficiently find all particles that are within a certain distance of a passed one.

As with the container::ClosePairContainer, there may be some neighbors returned that are not close neighbors, but all close neighbors will be returned.

Definition at line 29 of file NeighborsTable.h.

Public Member Functions

 NeighborsTable (kernel::PairContainer *input, std::string name="CloseNeighborsTable%1%")
 
const kernel::ParticleIndexesget_neighbors (kernel::ParticleIndex pi) const
 
virtual std::string get_type_name () const
 
virtual ::IMP::base::VersionInfo get_version_info () const
 Get information about the module and version of the object. More...
 
- Public Member Functions inherited from IMP::kernel::ScoreState
 ScoreState (kernel::Model *m, std::string name)
 
void after_evaluate (DerivativeAccumulator *accpt)
 Do post evaluation work if needed. More...
 
void before_evaluate ()
 Force update of the structure. More...
 
- Public Member Functions inherited from IMP::kernel::ModelObject
 ModelObject (kernel::Model *m, std::string name)
 
bool get_has_dependencies () const
 Return whether this object has dependencies computed. More...
 
bool get_has_required_score_states () const
 Return whether score states are computed. More...
 
ModelObjectsTemp get_inputs () const
 
ModelObjectsTemps get_interactions () const
 Get the interacting sets induced by this ModelObject. More...
 
Modelget_model () const
 
ModelObjectsTemp get_outputs () const
 
const ScoreStatesTempget_required_score_states () const
 Get the score states that are ancestors of this in the dependency graph. More...
 
void set_has_dependencies (bool tf)
 Either invalidate the dependencies or ensure they are correct. More...
 
void set_has_required_score_states (bool tf)
 Compute the required score states. More...
 
- Public Member Functions inherited from IMP::base::Object
virtual void clear_caches ()
 
CheckLevel get_check_level () const
 
LogLevel get_log_level () const
 
void set_check_level (CheckLevel l)
 
void set_log_level (LogLevel l)
 Set the logging level used in this object. More...
 
void set_was_used (bool tf) const
 
void show (std::ostream &out=std::cout) const
 
const std::string & get_name () const
 
void set_name (std::string name)
 

Protected Member Functions

virtual void do_after_evaluate (DerivativeAccumulator *)
 
virtual void do_before_evaluate ()
 
virtual kernel::ModelObjectsTemp do_get_inputs () const
 
virtual kernel::ModelObjectsTemp do_get_outputs () const
 
- Protected Member Functions inherited from IMP::kernel::ModelObject
virtual ModelObjectsTemps do_get_interactions () const
 
virtual void handle_set_has_required_score_states (bool)
 
- Protected Member Functions inherited from IMP::base::Object
 Object (std::string name)
 Construct an object with the given name. More...
 
virtual void do_destroy ()
 

Member Function Documentation

virtual kernel::ModelObjectsTemp IMP::core::NeighborsTable::do_get_inputs ( ) const
protectedvirtual

Get any Particle, Container or other ModelObjects read by this during evaluation. If you read everything in a container, you can just return that container.

Implements IMP::kernel::ModelObject.

Definition at line 35 of file NeighborsTable.h.

virtual kernel::ModelObjectsTemp IMP::core::NeighborsTable::do_get_outputs ( ) const
protectedvirtual

Get any Particle, Container or other ModelObjects changed by this during evaluation. This is only useful for ScoreStates, at the moment.

Implements IMP::kernel::ModelObject.

Definition at line 38 of file NeighborsTable.h.

const kernel::ParticleIndexes& IMP::core::NeighborsTable::get_neighbors ( kernel::ParticleIndex  pi) const

Return all kernel::ParticleIndexes that are within the distance threshold of this one (plus some that are aren't, for efficiency).

Definition at line 49 of file NeighborsTable.h.

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virtual ::IMP::base::VersionInfo IMP::core::NeighborsTable::get_version_info ( ) const
virtual

Get information about the module and version of the object.

Reimplemented from IMP::base::Object.

Definition at line 53 of file NeighborsTable.h.


The documentation for this class was generated from the following file: