A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X

A

Demuxer (IMP.isd.demux_trajs)

InContainerQuadFilter (IMP::container)

ParticleStates (IMP::domino)

Simplex (IMP::gsl)

AdvancedFlag (IMP::base)

DenseFloatLogGridKD (IMP::algebra)

InContainerSingletonFilter (IMP::container)

ParticleStatesTable (IMP::domino)

Simulator (IMP::atom)

Alignment (IMP.pmi.analysis)

DenseGrid3D (IMP::algebra)

InContainerTripletFilter (IMP::container)

PartitionalClustering (IMP::statistics)

SingleLinkage (IMP::em2d)

AlignmentClustering (IMP.multifit.cluster)

DenseGridStorageD (IMP::algebra)

IncrementalScoringFunction (IMP::core)

PartitionalClusteringWithCenter (IMP::statistics)

SingletonConstraint (IMP::core)

AlignSymmetric (IMP::cnmultifit)

DenseIntLogGrid3D (IMP::algebra)

Index (IMP::base)

PathLocalPlanner (IMP::kinematics)

SingletonContainer (IMP::kernel)

AllBipartitePairContainer (IMP::container)

DensityDataPoints (IMP::multifit)

IndexException (IMP::base)

PCAAligner (IMP::em)

SingletonContainerAdaptor (IMP::kernel)

AllMol2Selector (IMP::atom)

DensityFillingRestraint (IMP::em)

IndexStates (IMP::domino)

PCAFitRestraint (IMP::em)

SingletonContainerSet (IMP::container)

AllPairContainer (IMP::container)

DensityHeader (IMP::em)

IndexVector (IMP::base)

PCAFitRestraint (IMP::em2d)

SingletonContainerStatistics (IMP::container)

AllPDBSelector (IMP::atom)

DensityMap (IMP::em)

InitialDockingFromXlinks (IMP.em2d.buildxlinks)

PDBSelector (IMP::atom)

SingletonGeometry (IMP::display)

AllSamePairPredicate (IMP::core)

DependencyScoreState (IMP::domino)

InputAdaptor (IMP::base)

PermutationStates (IMP::domino)

SingletonModifier (IMP::kernel)

AllSameQuadPredicate (IMP::core)

DerivativeAccumulator (IMP::kernel)

InternalException (IMP::base)

Pipe (IMP.isd.utils)

SingletonPredicate (IMP::kernel)

AllSameSingletonPredicate (IMP::core)

DerivativeCalculator (IMP::saxs)

IntsOrder (IMP::em2d)

PivyWriter (IMP::display)

SingletonRestraint (IMP::core)

AllSameTripletPredicate (IMP::core)

DerivativesFromRefined (IMP::core)

IOException (IMP::base)

Plane3D (IMP::algebra)

SingletonsConstraint (IMP::container)

AmbiguousNOERestraint (IMP::isd)

DerivativesToRefined (IMP::core)

IsCollisionPairPredicate (IMP::core)

PlaneGeometry (IMP::display)

SingletonScore (IMP::kernel)

AmbiguousRestraint (IMP::isd)

DiameterRestraint (IMP::core)

IsosurfaceGeometry (IMP::display)

Pointer (IMP::base)

SingletonsGeometry (IMP::display)

Analysis (IMP.isd.Analysis)

Diffusion (IMP::atom)

J

PointerMember (IMP::base)

SingletonsOptimizerState (IMP::container)

AnalysisReplicaExchange0 (IMP.pmi.macros)

Dihedral (IMP::atom)

PointGeometry (IMP::display)

SingletonsRestraint (IMP::container)

AnchorsData (IMP::multifit)

DihedralAngleRevoluteJoint (IMP::kinematics)

JeffreysRestraint (IMP::isd)

PolarResamplingParameters (IMP::em2d)

SingletonStatistical (IMP::score_functor)

AndPDBSelector (IMP::atom)

DihedralRestraint (IMP::core)

Joint (IMP::kinematics)

PolygonGeometry (IMP::display)

SkinSurfaceGeometry (IMP::display)

Angle (IMP::atom)

DihedralSingletonScore (IMP::atom)

JPGImageReaderWriter (IMP::em2d)

PPDBSelector (IMP::atom)

Slave (IMP.parallel)

AngleRestraint (IMP::core)

DirectorObjectChecker (IMP.test)

K

Precision (IMP.pmi.analysis)

SlaveArray (IMP.parallel)

AngleSingletonScore (IMP::atom)

DiscreteSampler (IMP::domino)

PredicatePairsRestraint (IMP::container)

Slice (IMP::domino)

AngleTripletScore (IMP::core)

DisjointSetsSubsetFilterTable (IMP::domino)

KClosePairsPairScore (IMP::core)

PredicateQuadsRestraint (IMP::container)

SmoothingFunction (IMP::atom)

ApplicationTestCase (IMP.test)

DistanceFilter (IMP::em2d)

KernelParameters (IMP::em)

PredicateSingletonScore (IMP::core)

Soap (IMP::score_functor)

Array (IMP::base)

DistanceFilterTable (IMP::em2d)

Key (IMP::kernel)

PredicateSingletonsRestraint (IMP::container)

SoapPairFilter (IMP::atom)

AssemblyHeader (IMP::multifit)

DistanceMask (IMP::em)

KinematicForest (IMP::kinematics)

PredicateTripletsRestraint (IMP::container)

SoftCylinderPairScore (IMP::misc)

Assignment (IMP::domino)

DistancePairScore (IMP::core)

KinematicForestScoreState (IMP::kinematics)

PrincipalComponentAnalysisD (IMP::algebra)

SoftSpherePairScore (IMP::core)

AssignmentContainer (IMP::domino)

DistancePairScore (IMP::score_functor)

KinematicNode (IMP::kinematics)

PrismaticJoint (IMP::kinematics)

SolventAccessibleSurface (IMP::saxs)

AssignmentsTable (IMP::domino)

DistanceRestraint (IMP::core)

KMeans (IMP::kmeans)

ProbabilisticAnchorGraph (IMP::multifit)

SparseGrid3D (IMP::algebra)

Atom (IMP::atom)

DistributePairsScoreState (IMP::container)

L

ProbabilisticSubsetFilterTable (IMP::domino)

SparseGridStorageD (IMP::algebra)

AtomicCrossLinkMSRestraint (IMP::isd)

DistributeQuadsScoreState (IMP::container)

ProcessOutput (IMP.pmi.output)

SparseSymmetricPairMemoizer (IMP::base)

ATOMPDBSelector (IMP::atom)

DistributeSingletonsScoreState (IMP::container)

LabelGeometry (IMP::display)

Profile (IMP::saxs)

SparseUnboundedGrid3D (IMP::algebra)

AtomType (IMP::atom)

DistributeTripletsScoreState (IMP::container)

LangevinThermostatOptimizerState (IMP::atom)

ProfileFitter (IMP::saxs)

SparseUnboundedGridD (IMP::algebra)

AttributeOptimizer (IMP::kernel)

Distribution (IMP::saxs)

LeavesRefiner (IMP::core)

Profiler (IMP::benchmark)

SphereD (IMP::algebra)

AttributeSingletonPredicate (IMP::core)

DockOrder (IMP.em2d.buildxlinks)

LennardJones (IMP::atom)

ProjectingOptions (IMP::em2d)

SphereDistance (IMP::score_functor)

AverageDistanceLinkage (IMP::em2d)

DOF (IMP::kinematics)

LennardJonesPairScore (IMP::atom)

ProjectingParameters (IMP::em2d)

SphereDistancePairScore (IMP::core)

B

DOFsSampler (IMP::kinematics)

LessPairBySecond (IMP::em2d)

ProjectionFinder (IMP::em2d)

SphereDistanceToSingletonScore (IMP::core)

Domain (IMP::atom)

Linear (IMP::core)

ProjectionMask (IMP::em2d)

SphereGeometry (IMP::display)

BackbonePDBSelector (IMP::atom)

DominoModel (IMP.em2d.DominoModel)

Linear1DFunction (IMP::isd)

ProjectionParameters (IMP::em2d)

SpherePatch3D (IMP::algebra)

BallMover (IMP::core)

DominoSampler (IMP::domino)

LinearFit2D (IMP::algebra)

ProjectionParametersScoreState (IMP::em2d)

SphericalVector3D (IMP::algebra)

BallMover (IMP::symmetry)

Dope (IMP::score_functor)

LinearLowerBound (IMP::score_functor)

ProjectionStates (IMP::em2d)

SpiderHeader (IMP::em)

BerendsenThermostatOptimizerState (IMP::atom)

DopePairScore (IMP::atom)

ListAssignmentContainer (IMP::domino)

ProteinKinematics (IMP::kinematics)

SpiderImageReaderWriter (IMP::em2d)

BinormalTerm (IMP::modeller)

DummyRestraint (IMP::em2d)

ListAssignmentsTable (IMP::domino)

ProteinLigandAtomPairScore (IMP::atom)

SpiderMapReaderWriter (IMP::em)

BivariateFunction (IMP::isd)

DummyRestraint (IMP::multifit)

ListPairContainer (IMP::container)

ProteinLigandRestraint (IMP::atom)

State (IMP::atom)

Bond (IMP::atom)

DynamicListPairContainer (IMP::container)

ListQuadContainer (IMP::container)

ProteinsAnchorsSamplingSpace (IMP::multifit)

StateAdaptor (IMP::misc)

ForceFieldParameters::Bond (IMP::atom)

DynamicListQuadContainer (IMP::container)

ListSingletonContainer (IMP::container)

ProteomicsData (IMP::multifit)

Statistical (IMP::score_functor)

BondAngleRevoluteJoint (IMP::kinematics)

DynamicListSingletonContainer (IMP::container)

ListSubsetFilterTable (IMP::domino)

ProteomicsEMAlignmentAtomic (IMP::multifit)

StatisticalPairScore (IMP::core)

Bonded (IMP::atom)

DynamicListTripletContainer (IMP::container)

ListTripletContainer (IMP::container)

PymolWriter (IMP::display)

Statistics (IMP.isd.Statistics)

BondedPairFilter (IMP::atom)

DynamicNearestNeighbor3D (IMP::algebra)

LoadLink (IMP::rmf)

PythonDirectedGraph (IMP::kernel)

SteepestDescent (IMP::core)

BondEndpointsRefiner (IMP::atom)

E

LocalPlanner (IMP::kinematics)

Q

StereochemistryPairFilter (IMP::atom)

BondGeometry (IMP::atom)

LocalSlave (IMP.parallel)

Subset (IMP::domino)

BondGraph (IMP::atom)

EdgePairGeometry (IMP::core)

LogEmbeddingD (IMP::algebra)

QuadConstraint (IMP::core)

SubsetFilter (IMP::domino)

BondPairContainer (IMP::atom)

EdgePairsGeometry (IMP::core)

LogHolder (IMP.isd.demux_trajs)

QuadContainer (IMP::kernel)

SubsetFilterTable (IMP::domino)

BondsGeometry (IMP::atom)

ElementTable (IMP::atom)

LognormalRestraint (IMP::isd)

QuadContainerAdaptor (IMP::kernel)

SurfaceMeshGeometry (IMP::display)

BondSingletonScore (IMP::atom)

Ellipsoid3D (IMP::algebra)

LogPairScore (IMP::misc)

QuadContainerSet (IMP::container)

SurfaceShellDensityMap (IMP::em)

BoundedGridRangeD (IMP::algebra)

EllipsoidGeometry (IMP::display)

LogWrapper (IMP::isd)

QuadContainerStatistics (IMP::container)

Switching (IMP::isd)

BoundingBoxD (IMP::algebra)

Em2DRestraint (IMP::em2d)

LowestRefinedPairScore (IMP::misc)

QuadModifier (IMP::kernel)

Symmetric (IMP::pmi)

BoundingBoxGeometry (IMP::display)

Em2DRestraintParameters (IMP::em2d)

LRUCache (IMP::base)

QuadPredicate (IMP::kernel)

T

BoxSweepClosePairsFinder (IMP::core)

EM2DScore (IMP::em2d)

M

QuadraticClosePairsFinder (IMP::core)

BranchAndBoundAssignmentsTable (IMP::domino)

Embedding (IMP::statistics)

QuadRestraint (IMP::core)

TableRefiner (IMP::core)

BranchAndBoundSampler (IMP::domino)

EMReaderWriter (IMP::em)

Manager (IMP.parallel)

QuadsConstraint (IMP::container)

TALOSReader (IMP.isd.TALOSReader)

BrownianDynamics (IMP::atom)

Ensemble (IMP::multifit)

MapDistanceTransform (IMP::em)

QuadScore (IMP::kernel)

TALOSRestraint (IMP::isd)

BuildModel (IMP.pmi.macros)

EnvelopeFitRestraint (IMP::em)

MapReaderWriter (IMP::em)

QuadsOptimizerState (IMP::container)

TempDir (IMP.test)

BuildModel1 (IMP.pmi.macros)

EnvelopePenetrationRestraint (IMP::em)

MarginalHBondRestraint (IMP::isd)

QuadsRestraint (IMP::container)

TestCase (IMP.test)

C

EnvelopeScore (IMP::em)

MarginalNOERestraint (IMP::isd)

QuasiNewton (IMP::gsl)

TextInput (IMP::base)

EqualitySubsetFilterTable (IMP::domino)

MasksManager (IMP::em2d)

R

TextOutput (IMP::base)

CAlphaPDBSelector (IMP::atom)

EquivalenceAndExclusionSubsetFilterTable (IMP::domino)

Mass (IMP::atom)

TextWriter (IMP::display)

CappedAssignmentContainer (IMP::domino)

EquivalenceSubsetFilterTable (IMP::domino)

MasterCommunicator (IMP.parallel.master_communicator)

RadialDistributionFunction (IMP::saxs)

TIFFImageReaderWriter (IMP::em2d)

CBetaPDBSelector (IMP::atom)

Error (IMP.parallel)

MatchTemplateResult (IMP::em2d)

RadiusDependentDistanceMask (IMP::em)

Timer (IMP::base)

CenteredMat (IMP::em2d)

EuclideanMetric (IMP::statistics)

MaxVectorKDMetric (IMP::algebra)

RadiusDependentKernelParameters (IMP::em)

Transform (IMP::core)

CenterOfMass (IMP::atom)

EuclideanVectorKDMetric (IMP::algebra)

MCCGSampler (IMP::core)

RadiusOfGyrationRestraint (IMP::multifit)

Transformation2D (IMP::algebra)

Centroid (IMP::core)

EvaluationState (IMP::kernel)

MeanAbsoluteDifference (IMP::em2d)

RadiusOfGyrationRestraint (IMP::saxs)

Transformation3D (IMP::algebra)

CentroidOfRefined (IMP::core)

EventException (IMP::base)

Memoizer (IMP::base)

RAII (IMP::base)

TransformationAndReflectionSymmetry (IMP::core)

Chain (IMP::atom)

EventPairsOptimizerState (IMP::container)

MergeTreeBuilder (IMP::multifit)

RangeViewAssignmentContainer (IMP::domino)

TransformationJoint (IMP::kinematics)

ChainPDBSelector (IMP::atom)

EventQuadsOptimizerState (IMP::container)

Metric (IMP::statistics)

ReadAssignmentContainer (IMP::domino)

TransformationSymmetry (IMP::core)

Charged (IMP::atom)

EventSingletonsOptimizerState (IMP::container)

MetricClosePairsFinder (IMP::misc)

ReadHDF5AssignmentContainer (IMP::domino)

TransformedDistancePairScore (IMP::core)

CHARMMAtom (IMP::atom)

EventTripletsOptimizerState (IMP::container)

MinimumPairRestraint (IMP::container)

RecursiveAssignmentsTable (IMP::domino)

TransformMover (IMP::pmi)

CHARMMAtomTopology (IMP::atom)

ExampleComplexRestraint (IMP::example)

MinimumPairScore (IMP::container)

RecursivePartitionalClusteringEmbedding (IMP::statistics)

Triangle3D (IMP::algebra)

CHARMMBondEndpoint (IMP::atom)

ExampleConstraint (IMP::example)

MinimumQuadRestraint (IMP::container)

RecursivePartitionalClusteringMetric (IMP::statistics)

TriangleGeometry (IMP::display)

CHARMMBondParameters (IMP::atom)

ExampleDecorator (IMP::example)

MinimumQuadScore (IMP::container)

RecursiveStates (IMP::domino)

TripletConstraint (IMP::core)

CHARMMConnection (IMP::atom)

ExampleObject (IMP::example)

MinimumRestraint (IMP::core)

RefCountChecker (IMP.test)

TripletContainer (IMP::kernel)

CHARMMDihedralParameters (IMP::atom)

ExamplePairScore (IMP::example)

MinimumRestraintScoreSubsetFilterTable (IMP::domino)

Reference (IMP::core)

TripletContainerAdaptor (IMP::kernel)

CHARMMIdealResidueTopology (IMP::atom)

ExampleRestraint (IMP::example)

MinimumSingletonRestraint (IMP::container)

ReferenceFrame3D (IMP::algebra)

TripletContainerSet (IMP::container)

CHARMMInternalCoordinate (IMP::atom)

ExampleSingletonModifier (IMP::example)

MinimumSingletonScore (IMP::container)

ReferenceFrameGeometry (IMP::display)

TripletContainerStatistics (IMP::container)

CHARMMParameters (IMP::atom)

ExampleSubsetFilterTable (IMP::example)

MinimumTripletRestraint (IMP::container)

RefinedPairsPairScore (IMP::core)

TripletModifier (IMP::kernel)

CHARMMPatch (IMP::atom)

ExampleTemplateClassD (IMP::example)

MinimumTripletScore (IMP::container)

Refiner (IMP::kernel)

TripletPredicate (IMP::kernel)

CHARMMResidueTopology (IMP::atom)

ExampleUnaryFunction (IMP::example)

Model (IMP::kernel)

Reflection3D (IMP::algebra)

TripletRestraint (IMP::core)

CHARMMResidueTopologyBase (IMP::atom)

Exception (IMP::base)

ModelException (IMP::base)

RegistrationResult (IMP::em2d)

TripletsConstraint (IMP::container)

CHARMMSegmentTopology (IMP::atom)

ExcludedVolumeRestraint (IMP::core)

ModellerRestraints (IMP.modeller)

RelativePositionMover (IMP::em2d)

TripletScore (IMP::kernel)

CHARMMStereochemistryRestraint (IMP::atom)

ExclusionSubsetFilterTable (IMP::domino)

ModelLoader (IMP.modeller)

RemoteError (IMP.parallel)

TripletsOptimizerState (IMP::container)

CHARMMTopology (IMP::atom)

ExclusiveConsecutivePairContainer (IMP::container)

ModelObject (IMP::kernel)

RemoveRigidMotionOptimizerState (IMP::atom)

TripletsRestraint (IMP::container)

ChecksScoreState (IMP::core)

ExclusiveConsecutivePairFilter (IMP::container)

ModifierVisitor (IMP::core)

RemoveTranslationOptimizerState (IMP::atom)

TruncatedHarmonic (IMP::core)

ChiFreeScore (IMP::saxs)

ExtendedGridIndexD (IMP::algebra)

Mol2Selector (IMP::atom)

ReplicaExchange (IMP::mpi)

Typed (IMP::core)

ChildrenRefiner (IMP::core)

EzRestraint (IMP::atom)

MolCnSymmAxisDetector (IMP::cnmultifit)

Representation (IMP::atom)

TypedPairScore (IMP::core)

ChimeraWriter (IMP::display)

F

MolecularDynamics (IMP::isd)

RepulsiveDistancePairScore (IMP::isd)

U

ChiScore (IMP::saxs)

MolecularDynamics (IMP::atom)

Residue (IMP::atom)

ChiScoreLog (IMP::saxs)

FFTFitting (IMP::multifit)

MolecularDynamicsMover (IMP::isd)

ResidueRotamer (IMP::rotamer)

UnaryFunction (IMP::kernel)

ChiSquaredScore (IMP::em2d)

FFTFittingOutput (IMP::multifit)

Molecule (IMP::atom)

ResidueType (IMP::atom)

UnaryFunctionEvaluate (IMP::score_functor)

ChiSquareMetric (IMP::statistics)

FilterGeometry (IMP::display)

MonteCarlo (IMP::core)

Resolution (IMP::pmi)

UnboundedGridRangeD (IMP::algebra)

CloseBipartitePairContainer (IMP::container)

Fine2DRegistrationRestraint (IMP::em2d)

MonteCarloMover (IMP::core)

Restraint (IMP::saxs)

Uncertainty (IMP::pmi)

ClosedCubicSpline (IMP::core)

FitRestraint (IMP::em)

MonteCarloMoverResult (IMP::core)

Restraint (IMP::kernel)

UncheckedWeakPointer (IMP::base)

ClosePairContainer (IMP::container)

FittingSolutionRecord (IMP::multifit)

MonteCarloRelativeMoves (IMP.em2d.MonteCarloRelativeMoves)

RestraintCache (IMP::domino)

Undecorator (IMP::kernel)

ClosePairsFinder (IMP::core)

FittingSolutions (IMP::em)

MonteCarloWithBasinHopping (IMP::core)

RestraintGeometry (IMP::display)

UniformBackboneSampler (IMP::kinematics)

ClosePairsPairScore (IMP::core)

FittingStates (IMP::multifit)

MonteCarloWithLocalOptimization (IMP::core)

RestraintsAdaptor (IMP::kernel)

UniformPrior (IMP::isd)

Clustering (IMP.pmi.analysis)

FixedRefiner (IMP::core)

MoveStatisticsScoreState (IMP::core)

RestraintScoreSubsetFilterTable (IMP::domino)

UnivariateFunction (IMP::isd)

ClusterRecord (IMP.em2d.solutions_io)

FixedXYZ (IMP::algebra)

MRCReaderWriter (IMP::em)

RestraintSet (IMP::kernel)

UnorderedTypePairPredicate (IMP::core)

ClusterSet (IMP::em2d)

Flag (IMP::base)

MSConnectivityRestraint (IMP::core)

RestraintSetGeometry (IMP::display)

UnorderedTypeQuadPredicate (IMP::core)

CnSymmAxisDetector (IMP::cnmultifit)

FloatIndex (IMP::kernel)

MultipleBinormalRestraint (IMP::modeller)

RestraintsScoringFunction (IMP::core)

UnorderedTypeSingletonPredicate (IMP::core)

CoarseCC (IMP::em)

FNormal (IMP::isd)

MultivariateFNormalSufficient (IMP::isd)

ResultsDB (IMP.em2d.solutions_io)

UnorderedTypeTripletPredicate (IMP::core)

CoarseCCatIntervals (IMP::em)

ForceFieldParameters (IMP::atom)

MyMetric (write_a_metric)

RevoluteJoint (IMP::kinematics)

UsageException (IMP::base)

CoarseConvolution (IMP::em)

ForceSwitch (IMP::atom)

N

RigidBodiesImageFitRestraint (IMP::em2d)

V

CoinFlipPairPredicate (IMP::core)

FormFactorTable (IMP::saxs)

RigidBodiesProfileHandler (IMP::saxs)

CoinFlipQuadPredicate (IMP::core)

Fragment (IMP::atom)

NearestNeighborD (IMP::algebra)

RigidBody (IMP::core)

Value (IMP::base)

CoinFlipSingletonPredicate (IMP::core)

FretData (IMP::isd)

NearestNeighborsClosePairsFinder (IMP::core)

RigidBodyDerivativeGeometry (IMP::core)

ValueException (IMP::base)

CoinFlipTripletPredicate (IMP::core)

FretRestraint (IMP::isd)

NeighborsTable (IMP::core)

RigidBodyDerivativesGeometry (IMP::core)

Vector (IMP::base)

CollisionCrossSection (IMP::em2d)

G

NestedRigidBodyStates (IMP::domino)

RigidBodyDiffusion (IMP::atom)

VectorBaseD (IMP::algebra)

Color (IMP::display)

NetworkError (IMP.parallel)

RigidBodyDistancePairScore (IMP::core)

VectorD (IMP::algebra)

ColorChange (IMP.pmi.tools)

Gaussian (IMP::core)

NOERestraint (IMP::isd)

RigidBodyFrameGeometry (IMP::core)

VectorDEmbedding (IMP::statistics)

Colored (IMP::display)

Gaussian3D (IMP::algebra)

NoMoreSlavesError (IMP.parallel)

RigidBodyFramesGeometry (IMP::core)

VectorKDMetric (IMP::algebra)

CommandDispatcher (IMP.kernel)

GaussianEMRestraint (IMP::isd)

NonAlternativePDBSelector (IMP::atom)

RigidBodyHierarchyGeometry (IMP::core)

VelocityScalingOptimizerState (IMP::atom)

CommonEndpointPairFilter (IMP::misc)

GaussianProcessInterpolation (IMP::isd)

NonCopyable (IMP::base)

RigidBodyMember (IMP::core)

VersionInfo (IMP::base)

ComplementarityRestraint (IMP::multifit)

GaussianProcessInterpolationRestraint (IMP::isd)

NonHydrogenMol2Selector (IMP::atom)

RigidBodyMover (IMP::symmetry)

VolumeRestraint (IMP::core)

CompleteLinkage (IMP::em2d)

GaussianRestraint (IMP::isd)

NonRigidMember (IMP::core)

RigidBodyMover (IMP::core)

Voxel (IMP::em)

ComponentHeader (IMP::multifit)

GeneralizedGuinierPorodFunction (IMP::isd)

NonWaterNonHydrogenPDBSelector (IMP::atom)

RigidBodyStates (IMP::domino)

W

CompositeJoint (IMP::kinematics)

GenericAttributeSingletonScore (IMP::core)

NonWaterPDBSelector (IMP::atom)

RigidBodyTorque (IMP::core)

CompositeRestraint (IMP::pmi)

GenericBoundingBox3DSingletonScore (IMP::core)

NormalizedSphereDistancePairScore (IMP::core)

RigidBodyTunneler (IMP::core)

WarningContext (IMP::base)

CompoundStates (IMP::domino)

GenericDistanceToSingletonScore (IMP::core)

NormalMover (IMP::core)

RigidBodyUmbrella (IMP::core)

WaterPDBSelector (IMP::atom)

Cone3D (IMP::algebra)

GeometricHash (IMP::multifit)

NotPDBSelector (IMP::atom)

RigidClosePairsFinder (IMP::core)

WeakPointer (IMP::base)

Configuration (IMP::kernel)

GeometricPrimitiveD (IMP::algebra)

NPDBSelector (IMP::atom)

RigidMember (IMP::core)

Weight (IMP::isd)

ConfigurationSet (IMP::kernel)

Geometry (IMP::display)

Nuisance (IMP::isd)

RotamerAngleTuple (IMP::rotamer)

WeightedDerivativesToRefined (IMP::core)

ConfigurationSetRMSDMetric (IMP::statistics)

GeometryProcessor (IMP::display)

O

RotamerCalculator (IMP::rotamer)

WeightedExcludedVolumeRestraint (IMP::multifit)

ConfigurationSetXYZEmbedding (IMP::statistics)

GeometrySet (IMP::display)

RotamerLibrary (IMP::rotamer)

WeightedProfileFitter (IMP::saxs)

ConjugateGradients (IMP::gsl)

GetModelDensity (IMP.pmi.analysis)

Object (IMP::base)

Rotation2D (IMP::algebra)

WeightedSphereDistancePairScore (IMP::core)

ConjugateGradients (IMP::core)

GridClosePairsFinder (IMP::core)

OpenCubicSpline (IMP::core)

Rotation3D (IMP::algebra)

WeightMover (IMP::isd)

ConnectingPairContainer (IMP::container)

GridD (IMP::algebra)

OpenCubicSpline (IMP::score_functor)

RRT (IMP::kinematics)

WeightRestraint (IMP::isd)

ConnectivityRestraint (IMP::core)

GridIndexD (IMP::algebra)

Optimizer (IMP::kernel)

RunInTempDir (IMP.test)

WeightScore (IMP::score_functor)

ConnollySurfacePoint (IMP::algebra)

GridStates (IMP::em2d)

OptimizerState (IMP::kernel)

S

WormLikeChain (IMP::misc)

ConsecutivePairContainer (IMP::container)

GSLOptimizer (IMP::gsl)

OptionParser (IMP.kernel)

WriteAssignmentContainer (IMP::domino)

ConsecutivePairFilter (IMP::container)

H

Order (IMP::domino)

SameResiduePairFilter (IMP::atom)

WriteHDF5AssignmentContainer (IMP::domino)

ConstantPairPredicate (IMP::core)

OrderedTypePairPredicate (IMP::core)

SampleAssignmentContainer (IMP::domino)

WriteOptimizerState (IMP::display)

ConstantQuadPredicate (IMP::core)

Harmonic (IMP::core)

OrderedTypeQuadPredicate (IMP::core)

SampledDensityMap (IMP::em)

WritePDBOptimizerState (IMP::atom)

ConstantRestraint (IMP::core)

Harmonic (IMP::score_functor)

OrderedTypeSingletonPredicate (IMP::core)

SampleObjects (IMP.pmi.sampling_tools)

Writer (IMP::display)

ConstantSingletonPredicate (IMP::core)

HarmonicDistancePairScore (IMP::core)

OrderedTypeTripletPredicate (IMP::core)

Sampler (IMP::kernel)

WriterAdaptor (IMP::display)

ConstantTripletPredicate (IMP::core)

HarmonicLowerBound (IMP::core)

OrientedSoap (IMP::score_functor)

SaveLink (IMP::rmf)

WriteRestraintScoresOptimizerState (IMP::core)

Constraint (IMP::kernel)

HarmonicLowerBound (IMP::score_functor)

OrientedSoapPairScore (IMP::atom)

SaveOptimizerState (IMP::rmf)

X

ConstVector (IMP::base)

HarmonicSphereDistancePairScore (IMP::core)

OrPDBSelector (IMP::atom)

SaveToConfigurationSetOptimizerState (IMP::kernel)

Container (IMP::kernel)

HarmonicUpperBound (IMP::core)

Output (IMP.pmi.output)

Scale (IMP::isd)

Xlink (IMP.em2d.buildxlinks)

Context (IMP.parallel)

HarmonicUpperBound (IMP::score_functor)

P

ScopedAddCacheAttribute (IMP::kernel)

XlinksDict (IMP.em2d.buildxlinks)

Copy (IMP::atom)

HarmonicUpperBoundSphereDiameterPairScore (IMP::core)

ScopedSetAttribute (IMP::kernel)

XplorReaderWriter (IMP::em)

Cosine (IMP::core)

HarmonicUpperBoundSphereDistancePairScore (IMP::core)

PackedAssignmentContainer (IMP::domino)

Score (IMP::score_functor)

XYZ (IMP::core)

CoulombPairScore (IMP::atom)

HarmonicWell (IMP::core)

PairConstraint (IMP::core)

ScoreAccumulator (IMP::kernel)

XYZDerivativeGeometry (IMP::core)

Covariance1DFunction (IMP::isd)

HasHigherCCC (IMP::em2d)

PairContainer (IMP::kernel)

ScoreFunction (IMP::em2d)

XYZDerivativesGeometry (IMP::core)

Cover (IMP::core)

HasLowerScore (IMP::em2d)

PairContainerAdaptor (IMP::kernel)

ScoreState (IMP::kernel)

XYZR (IMP::core)

CoverBond (IMP::atom)

HeapAssignmentContainer (IMP::domino)

PairContainerSet (IMP::container)

ScoreUnaryFunction (IMP::score_functor)

XYZRGeometry (IMP::core)

CoverRefined (IMP::core)

HeapRecord (IMP.em2d.solutions_io)

PairContainerStatistics (IMP::container)

ScoringFunction (IMP::kernel)

XYZRsGeometry (IMP::core)

CPDBSelector (IMP::atom)

HierarchiesGeometry (IMP::atom)

PairGeometry (IMP::display)

ScoringFunctionAdaptor (IMP::kernel)

XYZStates (IMP::domino)

CreateLogContext (IMP::base)

Hierarchy (IMP::core)

PairListSubsetFilterTable (IMP::domino)

SecondaryStructureResidue (IMP::atom)

d

CrossLinkData (IMP::isd)

Hierarchy (IMP::atom)

PairModifier (IMP::kernel)

Segment3D (IMP::algebra)

CrossLinkMS (IMP.pmi.nonmantained)

HierarchyCounter (IMP::core)

PairPredicate (IMP::kernel)

SegmentationParameters (IMP::em2d)

dof (IMP.pmi.dof)

CrossLinkMSRestraint (IMP::isd)

HierarchyGeometry (IMP::atom)

PairRestraint (IMP::core)

SegmentGeometry (IMP::display)

m

CrossLinkTable (IMP.pmi.analysis)

HierarchyLoadLink (IMP::rmf)

PairsConstraint (IMP::container)

Selection (IMP::atom)

CustomXYZR (IMP::misc)

HierarchySaveLink (IMP::rmf)

PairScore (IMP::kernel)

SelectionGeometry (IMP::atom)

map (IMP::base)

CvEstimator (IMP.isd.TuneRex)

HierarchyTraits (IMP::core)

PairsGeometry (IMP::display)

SerialMover (IMP::core)

p

Cylinder3D (IMP::algebra)

HierarchyVisitor (IMP::core)

PairsOptimizerState (IMP::container)

SetCheckState (IMP::base)

CylinderGeometry (IMP::display)

HighDensityEmbedding (IMP::em)

PairsRestraint (IMP::container)

SetLogState (IMP::base)

piecewise_linear_distribution (IMP::base)

CysteineCrossLinkData (IMP::isd)

HistogramD (IMP::statistics)

ParabolicFit2D (IMP::algebra)

SetLogTarget (IMP::base)

s

CysteineCrossLinkRestraint (IMP::isd)

History (IMP.isd.History)

Particle (IMP::kernel)

SetNumberOfThreads (IMP::base)

D

HybridMonteCarlo (IMP::isd)

ParticleAdaptor (IMP::kernel)

SettingsData (IMP::multifit)

set (IMP::base)

HydrogenPDBSelector (IMP::atom)

ParticleEmbedding (IMP::statistics)

SGEPESlaveArray (IMP.parallel)

sfo_common (IMP.isd.shared_functions)

Database2 (IMP.em2d.Database)

I

ParticleIndexAdaptor (IMP::kernel)

SGEQsubSlaveArray (IMP.parallel)

v

Image (IMP::em2d)

vonMises (IMP::isd)

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