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IMP
2.3.1
The Integrative Modeling Platform
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IMP
2.3.1
The Integrative Modeling Platform
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A member of a rigid body, it has internal (local) coordinates. More...
#include <IMP/core/rigid_bodies.h>
Inheritance diagram for IMP::core::RigidBodyMember:A member of a rigid body, it has internal (local) coordinates.
Definition at line 368 of file rigid_bodies.h.
Public Member Functions | |
| RigidBodyMember (::IMP::kernel::Model *m,::IMP::kernel::ParticleIndex id) | |
| RigidBodyMember (const IMP::kernel::ParticleAdaptor &d) | |
| const algebra::Vector3D & | get_internal_coordinates () const |
| Return the internal (local) coordinates of this member. More... | |
| algebra::Transformation3D | get_internal_transformation () const |
| RigidBody | get_rigid_body () const |
| void | set_coordinates (const algebra::Vector3D ¢er) |
| sets the global coordinates of this member using XYZ::set_coordinates() More... | |
| void | set_internal_coordinates (const algebra::Vector3D &v) const |
| set the internal (local) coordinates for this member More... | |
| void | set_internal_transformation (const algebra::Transformation3D &v) |
| void | show (std::ostream &out=std::cout) const |
| Public Member Functions inherited from IMP::core::XYZ | |
| XYZ (::IMP::kernel::Model *m,::IMP::kernel::ParticleIndex id) | |
| XYZ (const IMP::kernel::ParticleAdaptor &d) | |
| void | add_to_derivative (int i, Float v, DerivativeAccumulator &d) |
| Add something to the derivative of the ith coordinate. More... | |
| void | add_to_derivatives (const algebra::Vector3D &v, DerivativeAccumulator &d) |
| Add something to the derivative of the coordinates. More... | |
| Float | get_coordinate (int i) const |
| Get the ith coordinate. More... | |
| const algebra::Vector3D & | get_coordinates () const |
| Convert it to a vector. More... | |
| bool | get_coordinates_are_optimized () const |
| Get whether the coordinates are optimized. More... | |
| Float | get_derivative (int i) const |
| Get the ith coordinate derivative. More... | |
| algebra::Vector3D | get_derivatives () const |
| Get the vector of derivatives. More... | |
| algebra::Vector3D | get_vector_to (const XYZ &b) const |
| Get the vector from this particle to another. More... | |
| Float | get_x () const |
| Float | get_y () const |
| Float | get_z () const |
| void | set_coordinate (unsigned int i, Float v) |
| set the ith coordinate More... | |
| void | set_coordinates (const algebra::Vector3D &v) |
| set all coordinates from a vector More... | |
| void | set_coordinates_are_optimized (bool tf) const |
| Set whether the coordinates are optimized. More... | |
| void | set_x (Float t) |
| void | set_y (Float t) |
| void | set_z (Float t) |
| void | show (std::ostream &out=std::cout) const |
| Public Member Functions inherited from IMP::kernel::Decorator | |
| bool | get_is_valid () const |
| Model * | get_model () const |
| Returns the Model containing the particle. More... | |
| Particle * | get_particle () const |
| Returns the particle decorated by this decorator. More... | |
| ParticleIndex | get_particle_index () const |
| Returns the particle index decorated by this decorator. More... | |
| operator Particle * () const | |
| operator ParticleIndex () const | |
| Particle * | operator-> () const |
Static Public Member Functions | |
| static FloatKeys | get_internal_coordinate_keys () |
| static bool | get_is_setup (const IMP::kernel::ParticleAdaptor &p) |
| static bool | get_is_setup (kernel::Model *m, kernel::ParticleIndexAdaptor p) |
| return true if it is a rigid member More... | |
| Static Public Member Functions inherited from IMP::core::XYZ | |
| static FloatKey | get_coordinate_key (unsigned int i) |
| static bool | get_is_setup (const IMP::kernel::ParticleAdaptor &p) |
| static bool | get_is_setup (kernel::Model *m, kernel::ParticleIndex pi) |
| static const FloatKeys & | get_xyz_keys () |
| Get a vector containing the keys for x,y,z. More... | |
| static XYZ | setup_particle (IMP::kernel::ParticleAdaptor decorator) |
| static XYZ | setup_particle (kernel::Model *m, ParticleIndex pi) |
| static XYZ | setup_particle (IMP::kernel::ParticleAdaptor decorator, algebra::Vector3D v) |
| static XYZ | setup_particle (kernel::Model *m, ParticleIndex pi, algebra::Vector3D v) |
Additional Inherited Members | |
| Protected Member Functions inherited from IMP::kernel::Decorator | |
| Decorator (Model *m, ParticleIndex pi) | |
| Decorator (ParticleAdaptor p) | |
| const algebra::Vector3D& IMP::core::RigidBodyMember::get_internal_coordinates | ( | ) | const |
Return the internal (local) coordinates of this member.
These coordinates are relative to the reference frame of the rigid body that owns it
Definition at line 377 of file rigid_bodies.h.
Here is the call graph for this function:| algebra::Transformation3D IMP::core::RigidBodyMember::get_internal_transformation | ( | ) | const |
Return the internal (local) coordinates of this member, assuming it is a rigid body itself Return the internal (local) coordinates of this rigid body relative to the reference frame of the rigid body that owns it
Definition at line 420 of file rigid_bodies.h.
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return true if it is a rigid member
Definition at line 457 of file rigid_bodies.h.
| void IMP::core::RigidBodyMember::set_coordinates | ( | const algebra::Vector3D & | center | ) |
sets the global coordinates of this member using XYZ::set_coordinates()
Definition at line 443 of file rigid_bodies.h.
Here is the call graph for this function:| void IMP::core::RigidBodyMember::set_internal_coordinates | ( | const algebra::Vector3D & | v | ) | const |
set the internal (local) coordinates for this member
Definition at line 382 of file rigid_bodies.h.
Here is the call graph for this function:| void IMP::core::RigidBodyMember::set_internal_transformation | ( | const algebra::Transformation3D & | v | ) |
Set the internal (local) coordinates of this member, assuming it is a rigid body itself Set the internal (local) coordinates of this rigid body relative to the reference frame of the rigid body that owns it
Definition at line 392 of file rigid_bodies.h.
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