IMP
2.3.1
The Integrative Modeling Platform
|
Support for running tests of IMP functionality. More...
Support for running tests of IMP functionality.
Most of this is centered around the Python unittest
module.
Author(s): Ben Webb, Daniel Russel
Maintainer: benmwebb
License: LGPL This library is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.
Publications:
Classes | |
class | ApplicationTestCase |
Super class for simple IMP application test cases. More... | |
class | DirectorObjectChecker |
Check to make sure the number of director references is as expected. More... | |
class | RefCountChecker |
Check to make sure the number of C++ object references is as expected. More... | |
class | RunInTempDir |
Simple RAII-style class to run in a temporary directory. More... | |
class | TempDir |
Simple RAII-style class to make a temporary directory. More... | |
class | TestCase |
Super class for IMP test cases. More... | |
Functions | |
def | numerical_derivative |
Calculate the derivative of the single-value function func at point val . More... | |
def | xyz_numerical_derivatives |
Calculate the x,y and z derivatives of model 's scoring function on the xyz particle. More... | |
Standard module functions | |
All | |
std::string | get_module_version () |
std::string | get_module_name () |
std::string | get_data_path (std::string file_name) |
Return the full path to installed data. More... | |
std::string | get_example_path (std::string file_name) |
Return the path to installed example data for this module. More... | |
std::string IMP::test::get_data_path | ( | std::string | file_name | ) |
Return the full path to installed data.
Each module has its own data directory, so be sure to use the version of this function in the correct module. To read the data file "data_library" that was placed in the data
directory of module "mymodule", do something like
This will ensure that the code works when IMP
is installed or used via the setup_environment.sh
script.
std::string IMP::test::get_example_path | ( | std::string | file_name | ) |
Return the path to installed example data for this module.
Each module has its own example directory, so be sure to use the version of this function in the correct module. For example to read the file example_protein.pdb
located in the examples
directory of the IMP::atom module, do
This will ensure that the code works when IMP
is installed or used via the setup_environment.sh
script.
def IMP.test.numerical_derivative | ( | func, | |
val, | |||
step | |||
) |
Calculate the derivative of the single-value function func
at point val
.
The derivative is calculated using simple finite differences starting with the given step
; Richardson extrapolation is then used to extrapolate the derivative at step=0.
Definition at line 337 of file test/__init__.py.
def IMP.test.xyz_numerical_derivatives | ( | model, | |
xyz, | |||
step | |||
) |
Calculate the x,y and z derivatives of model
's scoring function on the xyz
particle.
The derivatives are approximated numerically using the numerical_derivatives() function.
Definition at line 373 of file test/__init__.py.