IMP.pmi.analysis Namespace Reference

Tools for clustering and cluster analysis. More...

Detailed Description

Tools for clustering and cluster analysis.

Classes
class	Alignment
	Performs alignment and RMSD calculation for two sets of coordinates. More...
class	Clustering
	A class to cluster structures. More...
class	CrossLinkTable
	Visualization of crosslinks. More...
class	GetModelDensity
	A class to compute mean density maps from structures Keeps a dictionary of density maps, keys are in the custom ranges. More...
class	Precision
	A class to evaluate the precision of an ensemble. More...

Functions
def	get_particles_at_resolution_one
	Get particles at res 1, or any beads, based on the name (no Representation needed) It is mainly used when the hierarchy is read from an rmf file Returns a dictionary of component names and their particles. More...
def	get_particles_at_resolution_ten
	Get particles at res 10, or any beads, based on the name (no Representation needed) It is mainly used when the hierarchy is read from an rmf file Returns a dictionary of component names and their particles. More...

Function Documentation

def IMP.pmi.analysis.get_particles_at_resolution_one

(

prot

)

Get particles at res 1, or any beads, based on the name (no Representation needed) It is mainly used when the hierarchy is read from an rmf file Returns a dictionary of component names and their particles.

Definition at line 1397 of file pmi/Analysis.py.

def IMP.pmi.analysis.get_particles_at_resolution_ten

(

prot

)

Get particles at res 10, or any beads, based on the name (no Representation needed) It is mainly used when the hierarchy is read from an rmf file Returns a dictionary of component names and their particles.

Definition at line 1420 of file pmi/Analysis.py.