IMP  2.3.1
The Integrative Modeling Platform
IMP.pmi.analysis Namespace Reference

Tools for clustering and cluster analysis. More...

Detailed Description

Tools for clustering and cluster analysis.

Classes

class  Alignment
 Performs alignment and RMSD calculation for two sets of coordinates. More...
 
class  Clustering
 A class to cluster structures. More...
 
class  CrossLinkTable
 Visualization of crosslinks. More...
 
class  GetModelDensity
 A class to compute mean density maps from structures Keeps a dictionary of density maps, keys are in the custom ranges. More...
 
class  Precision
 A class to evaluate the precision of an ensemble. More...
 

Functions

def get_particles_at_resolution_one
 Get particles at res 1, or any beads, based on the name (no Representation needed) It is mainly used when the hierarchy is read from an rmf file Returns a dictionary of component names and their particles. More...
 
def get_particles_at_resolution_ten
 Get particles at res 10, or any beads, based on the name (no Representation needed) It is mainly used when the hierarchy is read from an rmf file Returns a dictionary of component names and their particles. More...
 

Function Documentation

def IMP.pmi.analysis.get_particles_at_resolution_one (   prot)

Get particles at res 1, or any beads, based on the name (no Representation needed) It is mainly used when the hierarchy is read from an rmf file Returns a dictionary of component names and their particles.

Definition at line 1397 of file pmi/Analysis.py.

def IMP.pmi.analysis.get_particles_at_resolution_ten (   prot)

Get particles at res 10, or any beads, based on the name (no Representation needed) It is mainly used when the hierarchy is read from an rmf file Returns a dictionary of component names and their particles.

Definition at line 1420 of file pmi/Analysis.py.