A class to compute mean density maps from structures Keeps a dictionary of density maps, keys are in the custom ranges. More...

Inherits object.

Detailed Description

A class to compute mean density maps from structures Keeps a dictionary of density maps, keys are in the custom ranges.

When you call add_subunits_density, it adds particle coordinates to the existing density maps.

Parameters

custom_ranges	Required. It's a dictionary, keys are the density component names, values are selection tuples e.g. {'kin28':[['kin28',1,-1]], 'density_name_1' :[('ccl1')], 'density_name_2' :[(1,142,'tfb3d1'),(143,700,'tfb3d2')],
representation	PMI representation, for doing selections. not needed if you only pass hierarchies
voxel	The voxel size for the output map (lower is slower)

Definition at line 922 of file pmi/Analysis.py.

Public Member Functions
def	add_subunits_density
	Add a frame to the densities. More...

def	get_density
	Get the current density for some component name. More...

Member Function Documentation

def IMP.pmi.analysis.GetModelDensity.add_subunits_density	(	self,
		hierarchy = `None`
	)

Add a frame to the densities.

Parameters

hierarchy Optionally read the hierarchy from somewhere. If not passed, will just read the representation.

Definition at line 945 of file pmi/Analysis.py.

def IMP.pmi.analysis.GetModelDensity.get_density	(	self,
		name
	)

Get the current density for some component name.

Definition at line 1015 of file pmi/Analysis.py.

The documentation for this class was generated from the following file: