IMP::statistics::ConfigurationSetRMSDMetric Class Reference

#include <IMP/statistics/metrics.h>

Inheritance diagram for IMP::statistics::ConfigurationSetRMSDMetric:

Detailed Description

Compute the RMSD between specified sets of particles in pairs of configurations, within a configuration set

Definition at line 36 of file metrics.h.

Public Member Functions
	ConfigurationSetRMSDMetric (ConfigurationSet *cs, SingletonContainer *sc, bool align=false)
double	get_distance (unsigned int i, unsigned int j) const
unsigned int	get_number_of_items () const
virtual std::string	get_type_name () const
virtual ::IMP::base::VersionInfo	get_version_info () const
	Get information about the module and version of the object. More...
Public Member Functions inherited from IMP::statistics::Metric
double	get_weight (unsigned int i) const
	Return a weight for the point. More...
Public Member Functions inherited from IMP::base::Object
virtual void	clear_caches ()
CheckLevel	get_check_level () const
LogLevel	get_log_level () const
void	set_check_level (CheckLevel l)
void	set_log_level (LogLevel l)
	Set the logging level used in this object. More...
void	set_was_used (bool tf) const
void	show (std::ostream &out=std::cout) const
const std::string &	get_name () const
void	set_name (std::string name)

Additional Inherited Members
Protected Member Functions inherited from IMP::statistics::Metric
	Metric (std::string name)
virtual double	do_get_weight (unsigned int i) const
	By default return 1.0. More...
Protected Member Functions inherited from IMP::base::Object
	Object (std::string name)
	Construct an object with the given name. More...
virtual void	do_destroy ()

Constructor & Destructor Documentation

IMP::statistics::ConfigurationSetRMSDMetric::ConfigurationSetRMSDMetric	(	ConfigurationSet *	cs,
		SingletonContainer *	sc,
		bool	align = false
	)

Constructor for creating a metric that computes RMSD between pairs of configurations in a configuration set, using joint particles specified in a singleton container

Parameters

cs	the set of configurations
sc	the particles used for RMSD calculation between each pair of configuration
align	whether to align pair of configurations prior to RMSD calculations

Member Function Documentation

virtual ::IMP::base::VersionInfo IMP::statistics::ConfigurationSetRMSDMetric::get_version_info ( ) const

virtual

Get information about the module and version of the object.

Reimplemented from IMP::base::Object.

Definition at line 57 of file metrics.h.

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The documentation for this class was generated from the following file:

• metrics.h