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IMP
2.3.1
The Integrative Modeling Platform
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IMP
2.3.1
The Integrative Modeling Platform
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A decorator for a particle that is part of a rigid body but not rigid. More...
#include <IMP/core/rigid_bodies.h>
Inheritance diagram for IMP::core::NonRigidMember:A decorator for a particle that is part of a rigid body but not rigid.
NonRigidMembers, like RigidMembers have internal coordinates and move along with the rigid body. However, it is expected that their internal coordinates will change, and so they are not part of structures that assume rigidity.
Definition at line 498 of file rigid_bodies.h.
Public Member Functions | |
| NonRigidMember (::IMP::kernel::Model *m,::IMP::kernel::ParticleIndex id) | |
| NonRigidMember (const IMP::kernel::ParticleAdaptor &d) | |
| void | show (std::ostream &out=std::cout) const |
| Public Member Functions inherited from IMP::core::RigidBodyMember | |
| RigidBodyMember (::IMP::kernel::Model *m,::IMP::kernel::ParticleIndex id) | |
| RigidBodyMember (const IMP::kernel::ParticleAdaptor &d) | |
| const algebra::Vector3D & | get_internal_coordinates () const |
| Return the internal (local) coordinates of this member. More... | |
| algebra::Transformation3D | get_internal_transformation () const |
| RigidBody | get_rigid_body () const |
| void | set_coordinates (const algebra::Vector3D ¢er) |
| sets the global coordinates of this member using XYZ::set_coordinates() More... | |
| void | set_internal_coordinates (const algebra::Vector3D &v) const |
| set the internal (local) coordinates for this member More... | |
| void | set_internal_transformation (const algebra::Transformation3D &v) |
| void | show (std::ostream &out=std::cout) const |
| Public Member Functions inherited from IMP::core::XYZ | |
| XYZ (::IMP::kernel::Model *m,::IMP::kernel::ParticleIndex id) | |
| XYZ (const IMP::kernel::ParticleAdaptor &d) | |
| void | add_to_derivative (int i, Float v, DerivativeAccumulator &d) |
| Add something to the derivative of the ith coordinate. More... | |
| void | add_to_derivatives (const algebra::Vector3D &v, DerivativeAccumulator &d) |
| Add something to the derivative of the coordinates. More... | |
| Float | get_coordinate (int i) const |
| Get the ith coordinate. More... | |
| const algebra::Vector3D & | get_coordinates () const |
| Convert it to a vector. More... | |
| bool | get_coordinates_are_optimized () const |
| Get whether the coordinates are optimized. More... | |
| Float | get_derivative (int i) const |
| Get the ith coordinate derivative. More... | |
| algebra::Vector3D | get_derivatives () const |
| Get the vector of derivatives. More... | |
| algebra::Vector3D | get_vector_to (const XYZ &b) const |
| Get the vector from this particle to another. More... | |
| Float | get_x () const |
| Float | get_y () const |
| Float | get_z () const |
| void | set_coordinate (unsigned int i, Float v) |
| set the ith coordinate More... | |
| void | set_coordinates (const algebra::Vector3D &v) |
| set all coordinates from a vector More... | |
| void | set_coordinates_are_optimized (bool tf) const |
| Set whether the coordinates are optimized. More... | |
| void | set_x (Float t) |
| void | set_y (Float t) |
| void | set_z (Float t) |
| void | show (std::ostream &out=std::cout) const |
| Public Member Functions inherited from IMP::kernel::Decorator | |
| bool | get_is_valid () const |
| Model * | get_model () const |
| Returns the Model containing the particle. More... | |
| Particle * | get_particle () const |
| Returns the particle decorated by this decorator. More... | |
| ParticleIndex | get_particle_index () const |
| Returns the particle index decorated by this decorator. More... | |
| operator Particle * () const | |
| operator ParticleIndex () const | |
| Particle * | operator-> () const |
Static Public Member Functions | |
| static bool | get_is_setup (const IMP::kernel::ParticleAdaptor &p) |
| static bool | get_is_setup (kernel::Model *m, kernel::ParticleIndex p) |
| return true if it is a rigid member More... | |
| Static Public Member Functions inherited from IMP::core::RigidBodyMember | |
| static FloatKeys | get_internal_coordinate_keys () |
| static bool | get_is_setup (const IMP::kernel::ParticleAdaptor &p) |
| static bool | get_is_setup (kernel::Model *m, kernel::ParticleIndexAdaptor p) |
| return true if it is a rigid member More... | |
| Static Public Member Functions inherited from IMP::core::XYZ | |
| static FloatKey | get_coordinate_key (unsigned int i) |
| static bool | get_is_setup (const IMP::kernel::ParticleAdaptor &p) |
| static bool | get_is_setup (kernel::Model *m, kernel::ParticleIndex pi) |
| static const FloatKeys & | get_xyz_keys () |
| Get a vector containing the keys for x,y,z. More... | |
| static XYZ | setup_particle (IMP::kernel::ParticleAdaptor decorator) |
| static XYZ | setup_particle (kernel::Model *m, ParticleIndex pi) |
| static XYZ | setup_particle (IMP::kernel::ParticleAdaptor decorator, algebra::Vector3D v) |
| static XYZ | setup_particle (kernel::Model *m, ParticleIndex pi, algebra::Vector3D v) |
Additional Inherited Members | |
| Protected Member Functions inherited from IMP::kernel::Decorator | |
| Decorator (Model *m, ParticleIndex pi) | |
| Decorator (ParticleAdaptor p) | |
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static |
return true if it is a rigid member
Definition at line 505 of file rigid_bodies.h.