Detailed Description

Set the coordinates (or any float keys) of the particle to be the centroid of the corresponding keys in a set of fine particles. An exception is thrown if there are no refined particles. The weight FloatKey can be used to reweight the centroid computation, or it can be set to FloatKey() and then all the weights will be equal to 1.0.

See Also: CoverRefined; DerivativesToRefined; DerivativesFromRefined

Definition at line 33 of file CentroidOfRefined.h.

Public Member Functions
	CentroidOfRefined (Refiner *r, FloatKey weight=FloatKey(), FloatKeys ks=XYZ::get_xyz_keys())
	Set the keys ks to be the average of the refined particles. More...

virtual void	apply_index (kernel::Model *m, kernel::ParticleIndex pi) const

virtual void	apply_indexes (kernel::Model *m, const kernel::ParticleIndexes &o, unsigned int lower_bound, unsigned int upper_bound) const

virtual kernel::ModelObjectsTemp	do_get_inputs (kernel::Model *m, const kernel::ParticleIndexes &pis) const

virtual kernel::ModelObjectsTemp	do_get_outputs (kernel::Model *m, const kernel::ParticleIndexes &pis) const

virtual std::string	get_type_name () const

virtual ::IMP::base::VersionInfo	get_version_info () const
	Get information about the module and version of the object. More...

Public Member Functions inherited from IMP::kernel::SingletonModifier
	SingletonModifier (std::string name="SingletonModifier %1%")

virtual void	apply (kernel::Particle *vt) const

Public Member Functions inherited from IMP::kernel::ParticleInputs
virtual ContainersTemp	get_input_containers (Particle *p) const

virtual ParticlesTemp	get_input_particles (Particle *p) const

ModelObjectsTemp	get_inputs (kernel::Model *m, const ParticleIndexes &pis) const

Public Member Functions inherited from IMP::kernel::ParticleOutputs
virtual ContainersTemp	get_output_containers (Particle *p) const

virtual ParticlesTemp	get_output_particles (Particle *p) const

ModelObjectsTemp	get_outputs (kernel::Model *m, const ParticleIndexes &pis) const

Public Member Functions inherited from IMP::base::Object
virtual void	clear_caches ()

CheckLevel	get_check_level () const

LogLevel	get_log_level () const

void	set_check_level (CheckLevel l)

void	set_log_level (LogLevel l)
	Set the logging level used in this object. More...

void	set_was_used (bool tf) const

void	show (std::ostream &out=std::cout) const

const std::string &	get_name () const

void	set_name (std::string name)

Additional Inherited Members
Public Types inherited from IMP::kernel::SingletonModifier
typedef kernel::Particle *	Argument

typedef kernel::ParticleIndex	IndexArgument

Protected Member Functions inherited from IMP::base::Object
	Object (std::string name)
	Construct an object with the given name. More...

virtual void	do_destroy ()

Constructor & Destructor Documentation

IMP::core::CentroidOfRefined::CentroidOfRefined	(	Refiner *	r,
		FloatKey	weight = `FloatKey()`,
		FloatKeys	ks = `XYZ::get_xyz_keys()`
	)

Set the keys ks to be the average of the refined particles.

Parameters

r	refiner used to retrieve the set of fine particles
weight	a key used to reweight the contribution of each fine particle to the centroid (eg, mass). In the centroid, this key will be set by apply_index() to the sum of all weights. A default weight of 1.0 is used if weight equals FloatKey().
ks	the keys over which the centroid is calculated

Member Function Documentation

virtual void IMP::core::CentroidOfRefined::apply_index	(	kernel::Model *	m,
		kernel::ParticleIndex	pi
	)		const

virtual

Compute the weighted centroid of the keys of refine particles (as passed in the constructor), and store the centroid values in the corresponding keys of particle pi. The sum of all weight of the refined particles are stored in the corresponding weight key of pi (it is assumed that pi has this key).

Parameters

m	the model of pi
pi	the centroid particle

Reimplemented from IMP::kernel::SingletonModifier.

virtual void IMP::core::CentroidOfRefined::apply_indexes	(	kernel::Model *	m,
		const kernel::ParticleIndexes &	o,
		unsigned int	lower_bound,
		unsigned int	upper_bound
	)		const

virtual

Apply the function to a collection of kernel::ParticlesTemp If bounds are passed, only apply to ones between the upper and lower bounds.

Reimplemented from IMP::kernel::SingletonModifier.

Definition at line 70 of file CentroidOfRefined.h.

virtual kernel::ModelObjectsTemp IMP::core::CentroidOfRefined::do_get_inputs	(	kernel::Model *	m,
		const kernel::ParticleIndexes &	pis
	)		const

virtual

Overload this method to specify the inputs.

Reimplemented from IMP::kernel::ParticleInputs.

virtual kernel::ModelObjectsTemp IMP::core::CentroidOfRefined::do_get_outputs	(	kernel::Model *	m,
		const kernel::ParticleIndexes &	pis
	)		const

virtual

Overload this method to specify the outputs.

Reimplemented from IMP::kernel::ParticleOutputs.

virtual ::IMP::base::VersionInfo IMP::core::CentroidOfRefined::get_version_info ( ) const

virtual

Get information about the module and version of the object.

Reimplemented from IMP::base::Object.

Definition at line 72 of file CentroidOfRefined.h.

The documentation for this class was generated from the following file:

CentroidOfRefined.h

Detailed Description

Public Member Functions

Additional Inherited Members

Constructor & Destructor Documentation

Member Function Documentation