Module/Namespace List

Here is a list of all IMP modules - each is also a C++ namespace and a Python package:

[detail level 123]

IMP	Synonym for IMP::kernel
algebra	General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP modules
atom	Functionality for loading, creating, manipulating and scoring atomic structures
base	Low level functionality (logging, error handling, profiling, command line flags etc) that is used by all of IMP
benchmark	Support for developing and analyzing benchmarks of IMP code
cgal	Make CGAL functionality available to IMP
cnmultifit	Generate cyclic atomic structures using cryo-electron microscopy data
container	Various classes to hold sets of particles
core	Basic functionality that is expected to be used by a wide variety of IMP users
display	Output IMP model data in various file formats
domino	Divide-and-conquer inferential optimization in discrete space
em	Basic utilities for handling cryo-electron microscopy 3D density maps
em2d	Restraints using electron microscopy 2D images (class averages)
argminmax	Utility functions to extract min/max from the inputs
buildxlinks	Utility functions to handle cross links
csv_related	Utility functions to handle CSV files
Database	Utility functions to manage SQL databases with sqlite3
restraints	Utility functions to handle restraints
solutions_io	Utility functions to store and retrieve solution information
example	Example module
gsl	Several general purpose optimizers from the GNU Scientific Library (GSL)
isd	Inferential scoring building on methods developed as part of the Inferential Structure Determination software (ISD)
Entry	Classes to handle ISD statistics files
gmm_tools	Tools for handling Gaussian Mixture Models
History	Classes to store output from replicas
TALOSReader	Classes to handle TALOS files or folders
TBLReader	Classes to handle TBL files
utils	Miscellaneous utilities
kernel	Base functionality and abstract base classes for representation, scoring and sampling
kinematics	Functionality for dealing with kinematic mechanical structures
kmeans	Interface to the GPL k-means clustering library
misc	Miscellaneous functionality that is not expected to be used by many IMP users
modeller	Interface to the Modeller comparative modeling package
module_template	Template for a module that is stored externally to IMP
mpi	Code that uses the MPI parallel library
multifit	Fitting atomic structures into a cryo-electron microscopy density map
parallel	Distribute IMP tasks to multiple processors or machines
master_communicator	Classes for communicating from the master to slaves
subproc	Subprocess handling
util	Utilities for the IMP.parallel module
pepdock	Initial peptide docking
pmi	Python classes to represent, score, sample and analyze models
analysis	Tools for clustering and cluster analysis
macros	Protocols for sampling structures and analyzing them
nonmaintained	Nonmaintained code
output	Classes for writing output files and processing them
representation	Representation of the system
samplers	Sampling of the system
tools	Miscellaneous utilities
rmf	Support for the RMF file format for storing hierarchical molecular data and markup
rotamer	Sampling of sidechain rotamers
saxs	Support for small angle X-ray scattering (SAXS) data
score_functor	Composable functors to implement scores via compile-time composition
scratch	A space to add temporary classes while experimenting without forcing you to create your own module
statistics	Code to compute statistical measures
symmetry	Support for basic symmetry, such as periodic boundary conditions (PBC)
test	Support for running tests of IMP functionality