IMP::atom::CoverBond Class Reference

Cover a bond with a sphere. More...

#include <IMP/atom/CoverBond.h>

Inheritance diagram for IMP::atom::CoverBond:

Detailed Description

Cover a bond with a sphere.

This is a version of core::CoverRefined optimized for bonds. It is about 4x faster than the general purpose one.

Definition at line 24 of file CoverBond.h.

Public Member Functions
virtual void	apply_index (kernel::Model *m, kernel::ParticleIndex p) const
virtual void	apply_indexes (kernel::Model *m, const kernel::ParticleIndexes &o, unsigned int lower_bound, unsigned int upper_bound) const
virtual kernel::ModelObjectsTemp	do_get_inputs (kernel::Model *m, const kernel::ParticleIndexes &pis) const
virtual kernel::ModelObjectsTemp	do_get_outputs (kernel::Model *m, const kernel::ParticleIndexes &pis) const
virtual std::string	get_type_name () const
virtual ::IMP::base::VersionInfo	get_version_info () const
	Get information about the module and version of the object. More...
Public Member Functions inherited from IMP::kernel::SingletonModifier
	SingletonModifier (std::string name="SingletonModifier %1%")
virtual void	apply (kernel::Particle *vt) const
Public Member Functions inherited from IMP::kernel::ParticleInputs
virtual ContainersTemp	get_input_containers (Particle *p) const
virtual ParticlesTemp	get_input_particles (Particle *p) const
ModelObjectsTemp	get_inputs (kernel::Model *m, const ParticleIndexes &pis) const
Public Member Functions inherited from IMP::kernel::ParticleOutputs
virtual ContainersTemp	get_output_containers (Particle *p) const
virtual ParticlesTemp	get_output_particles (Particle *p) const
ModelObjectsTemp	get_outputs (kernel::Model *m, const ParticleIndexes &pis) const
Public Member Functions inherited from IMP::base::Object
virtual void	clear_caches ()
CheckLevel	get_check_level () const
LogLevel	get_log_level () const
void	set_check_level (CheckLevel l)
void	set_log_level (LogLevel l)
	Set the logging level used in this object. More...
void	set_was_used (bool tf) const
void	show (std::ostream &out=std::cout) const
const std::string &	get_name () const
void	set_name (std::string name)

Additional Inherited Members
Public Types inherited from IMP::kernel::SingletonModifier
typedef kernel::Particle *	Argument
typedef kernel::ParticleIndex	IndexArgument
Protected Member Functions inherited from IMP::base::Object
	Object (std::string name)
	Construct an object with the given name. More...
virtual void	do_destroy ()

Member Function Documentation

virtual void IMP::atom::CoverBond::apply_index ( kernel::Model *  m, kernel::ParticleIndex  v  ) const

virtual

Apply the function to a single value

Reimplemented from IMP::kernel::SingletonModifier.

virtual void IMP::atom::CoverBond::apply_indexes ( kernel::Model *  m, const kernel::ParticleIndexes &  o, unsigned int  lower_bound, unsigned int  upper_bound  ) const

virtual

Apply the function to a collection of kernel::ParticlesTemp If bounds are passed, only apply to ones between the upper and lower bounds.

Reimplemented from IMP::kernel::SingletonModifier.

Definition at line 34 of file CoverBond.h.

virtual kernel::ModelObjectsTemp IMP::atom::CoverBond::do_get_inputs ( kernel::Model *  m, const kernel::ParticleIndexes &  pis  ) const

virtual

Overload this method to specify the inputs.

Reimplemented from IMP::kernel::ParticleInputs.

virtual kernel::ModelObjectsTemp IMP::atom::CoverBond::do_get_outputs ( kernel::Model *  m, const kernel::ParticleIndexes &  pis  ) const

virtual

Overload this method to specify the outputs.

Reimplemented from IMP::kernel::ParticleOutputs.

virtual ::IMP::base::VersionInfo IMP::atom::CoverBond::get_version_info ( ) const

virtual

Get information about the module and version of the object.

Reimplemented from IMP::base::Object.

Definition at line 35 of file CoverBond.h.

---

The documentation for this class was generated from the following file:

• CoverBond.h